Department of Biology

 

 
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  1. 2022
  2. Published

    Adaptation and Cryptic Pseudogenization in Penguin Toll-Like Receptors

    Fiddaman, S. R., Vinkler, M., Spiro, S. G., Levy, H., Emerling, C. A., Boyd, A. C., Dimopoulos, E. A., Vianna, J. A., Cole, T. L., Pan, H., Fang, M., KU, thw266, Hart, T., Frantz, L. A. F. & Smith, A. L., 2022, In: Molecular Biology and Evolution. 39, 1, 17 p., msab354.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Adult moulting and dimorphism in a new species of Sphenoderes (Kinorhyncha Kentrorhagata): Is the exception becoming the rule?

    Sørensen, Martin Vinther & Herranz, Maria, 2022, In: Acta Zoologica. 103, 2, p. 150-166 17 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    African climate and geomorphology drive evolution and ghost introgression in sable antelope

    Rocha, J. L., Vaz Pinto, P., Siegismund, Hans Redlef, Meyer, M., Jansen van Vuuren, B., Veríssimo, L., Ferrand, N. & Godinho, R., 2022, In: Molecular Ecology. 31, 10, p. 2968-2984 17 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Age, empathy, familiarity, domestication and call features enhance human perception of animal emotion expressions

    Greenall, J. S., Cornu, L., Maigrot, A. L., de la Torre, Mónica Padilla & Briefer, Elodie, 2022, In: Royal Society Open Science. 9, 12, 16 p., 221138.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Ameliorating effects of lifelong physical activity on healthy aging and mitochondrial function in human white adipose tissue

    Gudiksen, Anders, Qoqaj, A., Jørgensen, Stine Ringholm, Wojtaszewski, Jørgen F P, Plomgaard, Peter Stendahl & Pilegaard, Henriette, 2022, In: Journals of Gerontology. Series A: Biological Sciences & Medical Sciences. 77, 6, p. 1101-1111 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Ameliorative Effects of Trichoderma harzianum and Rhizosphere Soil Microbes on Cadmium Biosorption of Barley (Hordeum vulgare L.) in Cd-Polluted Soil

    Taghavi Ghasemkheili, F., Ekelund, Flemming, Johansen, Jesper Liengaard, Pirdashti, H., Ghadirnezhad Shiade, S. R., Fathi, A. & Kjøller, Rasmus, 2022, In: Journal of Soil Science and Plant Nutrition. 22, 1, p. 527-539 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    An LDLR missense variant poses high risk of familial hypercholesterolemia in 30% of Greenlanders and offers potential of early cardiovascular disease intervention

    Jørsboe, E., Andersen, M. K., Skotte, L., Stæger, F. F., Færgeman, N. J., Hanghøj, K., Santander, C. G., Senftleber, N. K., Diaz, L. J., Overvad, M., Waples, R. K., Geller, F., Bjerregaard, P., Melbye, M., Larsen, C. V. L., Feenstra, B., Anders Koch, K., Jørgensen, M. E., Grarup, N., Moltke, I. & 2 others, Albrechtsen, Anders & Hansen, Torben, 2022, In: Human Genetics and Genomics Advances. 3, 4, 10 p., 100118.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    An adipose lncRAP2-Igf2bp2 complex enhances adipogenesis and energy expenditure by stabilizing target mRNAs

    Alvarez-Dominguez, J. R., Winther, Sally, Hansen, Jacob B., Lodish, H. F. & Knoll, M., 2022, In: iScience. 25, 1, 25 p., 103680.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    An easily modifiable conjugative plasmid for studying horizontal gene transfer

    Wang, Q., Olesen, Asmus Kalckar, Maccario, Lorrie & Madsen, Jonas Stenløkke, 2022, In: Plasmid. 123-124, 10 p., 102649.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    An update on principles of m6A targeting

    Bai, B., 2022, In: Trends in Plant Science. 27, 3, p. 224-226 3 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Analysis of the fecal and oral microbiota in chronic recurrent multifocal osteomyelitis

    Rausch, P., Hartmann, M., Baines, J. F. & von Bismarck, P., 2022, In: Arthritis Research and Therapy. 24, 16 p., 54.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Ancient and historical DNA in conservation policy

    Jensen, E. L., Díez-del-Molino, D., Gilbert, M Thomas P, Bertola, Laura, Borges, F., Cubric-Curik, V., de Navascués, M., Frandsen, P., Heuertz, M., Hvilsom, C., Jiménez-Mena, B., Miettinen, A., Moest, M., Chrzanová Pecnerová, Patrícia, Barnes, I. & Vernesi, C., 2022, In: Trends in Ecology and Evolution. 37, 5, p. 420-429 10 p.

    Research output: Contribution to journal › Review › Research › peer-review

  14. Published

    Ancient proteins resolve controversy over the identity of Genyornis eggshell

    Demarchi, B., Stiller, Josefin, Grealy, A., Mackie, Meaghan, Deng, Y., Gilbert, M Thomas P, Clarke, J., Legendre, L. J., Boano, R., Sicheritz-Pontén, Thomas, Magee, J., KU, thw266, Bunce, M., Collins, Matthew James & Miller, G., 2022, In: PNAS. 119, 43, 9 p., e2109326119.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Angiomotin isoform 2 promotes binding of PALS1 to KIF13B at primary cilia and regulates ciliary length and signaling

    Morthorst, Stine Kjær, Nielsen, C., Farinelli, P., Anvarian, Zeinab, Rasmussen, C. B. R., Serra-Marques, A., Grigoriev, I., Altelaar, M., Fürstenberg, N., Ludwig, A., Akhmanova, A., Christensen, Søren Tvorup & Pedersen, Lotte Bang, 2022, In: Journal of Cell Science. 135, 12, 10 p., jcs259471.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Anthropogenically impacted lake catchments in Denmark reveal low microplastic pollution

    Kallenbach, E. M. F., Friberg, N., Lusher, A., Jacobsen, Dean & Hurley, R. R., 2022, In: Environmental Science and Pollution Research. 29, 31, p. 47726-47739 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Appraisal of a novel fishery of whelks (Buccinum undatum) in Danish waters

    Vismann, Bent, Nielsen, J. W. & Ronfeldt, J. L., 2022, In: Regional Studies in Marine Science. 56, 11 p., 102710.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Arbuscular mycorrhizal fungal communities of pristine rainforests and adjacent sugarcane fields recruit from different species pools

    Pereira, C. M. R., López-García, Á., Maia, L. C., Frøslev, Tobias Guldberg, Kjøller, Rasmus & Rosendahl, Søren, 2022, In: Soil Biology and Biochemistry. 167, 9 p., 108585.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Arctic freshwater biodiversity: Establishing baselines, trends, and drivers of ecological change

    Culp, J. M., Goedkoop, W., Christensen, T., Christoffersen, Kirsten Seestern, Fefilova, E., Liljaniemi, P., Novichkova, A. A., Ólafsson, J. S., Sandøy, S., Zimmerman, C. E. & Lento, J., 2022, In: Freshwater Biology. 67, 1, p. 1-13 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Arctic soil respiration and microbial community structure driven by silicon and calcium

    Stimmler, P., Priemé, Anders, Elberling, Bo, Goeckede, M. & Schaller, J., 2022, In: Science of the Total Environment. 838, 2, 10 p., 156152.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Artificial selection of stable rhizosphere microbiota leads to heritable plant phenotype changes

    Jacquiod, S., Spor, A., Wei, S., Munkager, V., Bru, D., Sørensen, Søren Johannes, Salon, C., Philippot, L. & Blouin, M., 2022, In: Ecology Letters. 25, 1, p. 189-201 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Asthma and Wheeze Severity and the Oropharyngeal Microbiota in Children and Adolescents

    Thorsen, J., Stokholm, J., Rasmussen, M. A., Roggenbuck-Wedemeyer, M., Vissing, N. H., Mortensen, M. S., Brejnrod, A. D., Fleming, L., Bush, A., Roberts, G., Singer, F., Frey, U., Hedlin, G., Nordlund, B., Murray, C. S., Abdel-Aziz, M. I., Hashimoto, S., van Aalderen, W., Maitland-van der Zee, A. H., Shaw, D. & 13 others, Fowler, S. J., Sousa, A., Sterk, P. J., Chung, K. F., Adcock, I. M., Djukanovic, R., Auffray, C., Bansal, A. T., Wagers, S., Chawes, Bo Lund Krogsgaard, Bønnelykke, Klaus, Sørensen, Søren Johannes & Bisgaard, H., 2022, In: Annals of the American Thoracic Society. 19, 12, p. 2031-2043 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Avian gut microbiomes taking flight

    Bodawatta, Kasun Harshana, Hird, S. M., Grond, K., Poulsen, Michael & Jønsson, Knud Andreas, 2022, In: Trends in Microbiology. 30, 3, p. 268-280 13 p.

    Research output: Contribution to journal › Review › Research › peer-review

  24. Published

    Barley Rhizosphere Microbiome Transplantation: A Strategy to Decrease Susceptibility of Barley Grown in Soils With Low Microbial Diversity to Powdery Mildew

    Bziuk, N., Maccario, Lorrie, Sørensen, Søren Johannes, Schikora, A. & Smalla, K., 2022, In: Frontiers in Microbiology. 13, 14 p., 830905.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Benchmarking freely available HLA typing algorithms across varying genes, coverages and typing resolutions

    Thuesen, N. H., Klausen, M. S., Gopalakrishnan, Shyam, Trolle, T. & Renaud, Gabriel, 2022, In: Frontiers in Immunology. 13, 15 p., 987655.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    Beta2-agonist increases skeletal muscle interleukin 6 production and release in response to resistance exercise in men

    Hostrup, Morten, Knudsen, Jakob Grunnet, Maag Kristensen, C., Jessen, Søren Kaare, Pilegaard, Henriette & Bangsbo, Jens, 2022, In: Scandinavian Journal of Medicine & Science in Sports. 32, 7, p. 1099-1108 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    Bidirectional Exchange of Biogenic Volatile Organic Compounds in Subarctic Heath Mesocosms During Autumn Climate Scenarios

    Baggesen, N. S., Davie-Martin, Cleo Lisa, Seco, Roger, Holst, T. & Rinnan, Riikka, 2022, In: Journal of Geophysical Research: Biogeosciences. 127, 6, 20 p., e2021JG006688.

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    Bidirectional protein–protein interactions control liquid–liquid phase separation of PSD-95 and its interaction partners

    Christensen, N. R., Pedersen, Christian Parsbæk, Sereikaité, Vita, Pedersen, J. N., Vistrup-Parry, M., Sørensen, Andreas Toft, Otzen, D., Teilum, Kaare, Madsen, Kenneth Lindegaard & Strømgaard, Kristian, 2022, In: iScience. 25, 2, 26 p., 103808.

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    Biochar application differentially affects soil micro-, meso-macro-fauna and plant productivity within a nature restoration grassland

    Jeffery, S., van de Voorde, T. F. J., Harris, W. E., Mommer, L., Van Groenigen, J. W., De Deyn, G. B., Ekelund, Flemming, Briones, M. J. I. & Bezemer, T. M., 2022, In: Soil Biology and Biochemistry. 174, 11 p., 108789.

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    Biodiversity patterns of Arctic diatom assemblages in lakes and streams: Current reference conditions and historical context for biomonitoring

    Kahlert, M., Rühland, K. M., Lavoie, I., Keck, F., Saulnier-Talbot, E., Bogan, D., Brua, R. B., Campeau, S., Christoffersen, Kirsten Seestern, Culp, J. M., Karjalainen, S. M., Lento, J., Schneider, S. C., Shaftel, R. & Smol, J. P., 2022, In: Freshwater Biology. 67, 1, p. 116-140 25 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    Biofilm cultivation facilitates coexistence and adaptive evolution in an industrial bacterial community

    Henriksen, N. N. S. E., Hansen, Mads Frederik, Kiesewalter, Heiko T., Russel, J., Nesme, Joseph, Foster, K. R., Svensson, B., Øregaard, G., Herschend, J. & Burmølle, Mette, 2022, In: npj Biofilms and Microbiomes. 8, 8 p., 59.

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    Bioinformatics of transcription factor binding prediction

    Navarro-Delgado, E. I., Salgado-Albarrán, M., Torres-Arciga, K., Alcaraz, N., Soto-Reyes, E., Herrera, L. A. & González-Barrios, R., 2022, Bioinformatics and Human Genomics Research. CRC Press, p. 203-221 19 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  33. Published

    Biophysical properties at patch scale shape the metabolism of biofilm landscapes

    Depetris, A., Tagliavini, G., Peter, H., Kühl, Michael, Holzner, M. & Battin, T. J., 2022, In: npj Biofilms and Microbiomes. 8, 12 p., 5.

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    Biosolids for safe land application: does wastewater treatment plant size matters when considering antibiotics, pollutants, microbiome, mobile genetic elements and associated resistance genes?

    Wolters, B., Hauschild, K., Blau, K., Mulder, I., Heyde, B. J., Sørensen, Søren Johannes, Siemens, J., Jechalke, S., Smalla, K. & Nesme, Joseph, 2022, In: Environmental Microbiology. 24, 3, p. 1573-1589 17 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    Biosynthesis of Guanitoxin Enables Global Environmental Detection in Freshwater Cyanobacteria

    Lima, S. T., Fallon, T. R., Cordoza, J. L., Chekan, J. R., Delbaje, E., Hopiavuori, A. R., Alvarenga, Danillo Oliveira, Wood, S. M., Luhavaya, H., Baumgartner, J. T., Dörr, F. A., Etchegaray, A., Pinto, E., McKinnie, S. M. K., Fiore, M. F. & Moore, B. S., 2022, In: Journal of the American Chemical Society. 144, 21, p. 9372-9379

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    Biotic and abiotic controls of nitrogen fixation in cyanobacteria-moss associations

    Rousk, Kathrin, 2022, In: New Phytologist. 235, 4, p. 1330-1335 6 p.

    Research output: Contribution to journal › Review › Research › peer-review

  37. Published

    Bland James Finlay (March 16, 1952-December 24, 2021)

    Fenchel, Tom, 2022, In: Protist. 173, 5, 4 p., 125906.

    Research output: Contribution to journal › Comment/debate › Research

  38. Published

    Bryophyte species differ widely in their growth and N2-fixation responses to temperature

    Rzepczynska, A. M., Michelsen, Anders, Olsen, M. A. N. & Lett, Signe, 2022, In: Arctic Science. 8, 4, 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    CO2 i Skandinaviens vandløb analyseret med maskinlæring

    Martinsen, K. T. & Sand-Jensen, Kaj, 2022, In: Vand & Jord. 5, p. 207-210

    Research output: Contribution to journal › Journal article › Communication

  40. Published

    CRISPR-Cas systems are widespread accessory elements across bacterial and archaeal plasmids

    Pinilla Redondo, Rafael, Russel, J., Mayo-Muñoz, D., Shah, S. A., Garrett, Roger Antony, Nesme, Joseph, Madsen, Jonas Stenløkke, Fineran, P. C. & Sørensen, Søren Johannes, 2022, In: Nucleic Acids Research. 50, 8, p. 4315-4328

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    CRISPR-Cas12a targeting of ssDNA plays no detectable role in immunity

    Marino, N. D., Pinilla Redondo, Rafael & Bondy-Denomy, J., 2022, In: Nucleic acids symposium series. 50, 11, p. 6414-6422 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    CRISPR/Cas9 gRNA activity depends on free energy changes and on the target PAM context

    Corsi, G. I., Qu, Kunli, Alkan, F., Pan, Xiaoguang, Luo, Y. & Gorodkin, Jan, 2022, In: Nature Communications. 13, 14 p., 3006.

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    CReSIL: accurate identification of extrachromosomal circular DNA from long-read sequences

    Wanchai, V., Jenjaroenpun, P., Leangapichart, T., Arrey Tané, Gerard, Burnham, C. M., Tümmler, M. C., Delgado-Calle, J., Regenberg, Birgitte & Nookaew, I., 2022, In: Briefings in Bioinformatics. 23, 6, 11 p., bbac422.

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    Calibrated uncertainty for molecular property prediction using ensembles of message passing neural networks

    Busk, J., Jørgensen, P. B., Bhowmik, A., Schmidt, M. N., Winther, Ole & Vegge, T., 2022, In: Machine Learning: Science and Technology. 3, 1, 12 p., 015012.

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    Can bryophyte groups increase functional resolution in tundra ecosystems?

    Lett, S., Jónsdóttir, I. S., Becker-Scarpitta, A., Christiansen, C. T., During, H., Ekelund, F., Henry, G. H. R., Lang, S. I., Michelsen, A., Rousk, K., Alatalo, J. M., Betway, K. R., Rui, S. B., Callaghan, T., Carbognani, M., Cooper, E. J., Cornelissen, J. H. C., Dorrepaal, E., Egelkraut, D., Elumeeva, T. G. & 20 others, Haugum, S. V., Hollister, R. D., Jägerbrand, A. K., Keuper, F., Klanderud, K., Lévesque, E., Liu, X., May, J., Michel, P., Mörsdorf, M., Petraglia, A., Rixen, C., Robroek, B. J. M., Rzepczynska, A. M., Soudzilovskaia, N. A., Tolvanen, A., Vandvik, V., Volkov, I., Volkova, I. & Zuijlen, K. V., 2022, In: Arctic Science. 8, 3, 29 p.

    Research output: Contribution to journal › Review › Research › peer-review

  46. Published

    Can multi-species biofilms defeat antimicrobial surfaces on medical devices?

    Ramstedt, M. & Burmølle, Mette, 2022, In: Current Opinion in Biomedical Engineering. 22, 8 p., 100370.

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    Canalized gene expression during development mediates caste differentiation in ants

    Qiu, Bitao, Dai, X., Li, P., Larsen, Rasmus Stenbak, Li, Ruyan, Price, A. L., Ding, G., Texada, Michael James, Zhang, X., Zuo, D., Gao, Q., Jiang, W., Wen, T., Pontieri, L., Guo, C., Rewitz, Kim, Li, Q., Liu, W., Boomsma, Jacobus J. & KU, thw266, 2022, In: Nature Ecology and Evolution. 6, 11, p. 1753-1765

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    Candidemia among Hospitalized Pediatric Patients Caused by Several Clonal Lineages of Candida parapsilosis

    Hare, R. K., Arastehfar, A., Rosendahl, Søren, Charsizadeh, A., Daneshnia, F., Eshaghi, H., Mirhendi, H., Boekhout, T., Hagen, F. & Arendrup, Maiken Cavling, 2022, In: Journal of Fungi. 8, 2, 11 p., 183.

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    Cardiovascular Autonomic Neuropathy in Type 1 Diabetes Is Associated With Disturbances in TCA, Lipid, and Glucose Metabolism

    Hansen, C. S., Suvitaival, T., Theilade, Karen Simone, Mattila, I., Lajer, M., Trošt, K., Ahonen, L., Hansen, T. W., Legido-Quigley, C., Rossing, Peter & Ahluwalia, Tarun Veer Singh, 2022, In: Frontiers in Endocrinology. 13, 831793.

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    Casein and red meat proteins differentially affect the composition of the gut microbiota in weaning rats

    Zhao, Fan, Wang, Chong, Song, S., Fang, C., Zhou, G., Li, C. & Kristiansen, Karsten, 2022, In: Food Chemistry. 397, 11 p., 133769.

    Research output: Contribution to journal › Journal article › Research › peer-review

  51. Published

    Cell fine structure and phylogeny of Parvodinium: towards an ultrastructural characterization of the Peridiniopsidaceae (Dinophyceae)

    Pandeirada, M. S., Craveiro, S. C., Daugbjerg, Niels, Moestrup, Øjvind & Calado, A. J., 2022, In: European Journal of Phycology. 58, 2, 21 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  52. Published

    Cell size matters: Nano- and micro-plastics preferentially drive declines of large marine phytoplankton due to co-aggregation

    Dedman, C. J., Christie-Oleza, J. A., Fernandez Juarez, Victor & Echeveste, P., 2022, In: Journal of Hazardous Materials. 424, Part B, 13 p., 127488.

    Research output: Contribution to journal › Journal article › Research › peer-review

  53. Published

    Cell transcriptomic atlas of the non-human primate Macaca fascicularis

    Han, L., Wei, X., Liu, C., Volpe, G., Zhuang, Z., Zou, X., Wang, Z., Pan, T., Yuan, Y., Zhang, X., Fan, P., Guo, P., Lai, Y., Lei, Y., Liu, X., Yu, F., Shangguan, S., Lai, G., Deng, Q., Liu, Y. & 57 others, Wu, L., Shi, Quan, Yu, H., Huang, Y., Cheng, M., Xu, J., Liu, Y., Wang, M., Wang, C., Zhang, Y., Xie, D., Yang, Y., Yu, Y., Zheng, H., Wei, Y., Huang, F., Lei, J., Huang, W., Zhu, Z., Lu, H., Wang, B., Wei, X., Chen, F., Yang, T., Du, W., Chen, J., Xu, S., An, J., Ward, C., Wang, Z., Pei, Z., Wong, C., Liu, X., Zhang, H., Liu, M., Qin, B., Schambach, A., Isern, J., Feng, L., Liu, Y., Guo, X., Liu, Z., Sun, Q., Maxwell, P. H., Barker, N., Muñoz-Cánoves, P., Gu, Y., Mulder, J., Uhlen, M., Tan, T., Liu, S., Yang, H., Wang, J., Hou, Y., Xu, X., Esteban, M. A. & Liu, L., 2022, In: Nature. 604, p. 723-731

    Research output: Contribution to journal › Journal article › Research › peer-review

  54. Published

    Changes in the foliar fungal community between oak leaf flushes along a latitudinal gradient in Europe

    Gaytán, Á., Abdelfattah, A., Faticov, M., Moreira, X., Castagneyrol, B., Van Halder, I., De Frenne, P., Meeussen, C., Timmermans, B. G. H., Ten Hoopen, J. P. J. G., Rasmussen, P. U., Bos, N., Jaatinen, R., Pulkkinen, P., Söderlund, S., Gotthard, K., Pawlowski, K. & Tack, A. J. M., 2022, In: Journal of Biogeography. 49, 12, 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  55. Published

    Characterization of Divalent Cation Interactions with AASTY Nanodiscs

    Timcenko, Milena, Autzen, A. A. A. & Autzen, Henriette Elisabeth, 2022, In: ACS Applied Polymer Materials. 4, 2, p. 1071-1083

    Research output: Contribution to journal › Journal article › Research › peer-review

  56. Published

    Characterization of erenumab and rimegepant on calcitonin gene-related peptide induced responses in Xenopus Laevis oocytes expressing the calcitonin gene-related peptide receptor and the amylin-1 receptor

    La Cour, S. H., Juhler, K., Kogelman, L. J. A., Olesen, Jes, Klærke, Dan Arne, Kristensen, D. M. & Jansen-Olesen, I., 2022, In: Journal of Headache and Pain. 23, 12 p., 59.

    Research output: Contribution to journal › Journal article › Research › peer-review

  57. Published

    Chemotaxis may assist marine heterotrophic bacterial diazotrophs to find microzones suitable for N2 fixation in the pelagic ocean

    Hallstrøm, S., Raina, J., Ostrowski, M., Parks, D. H., Tyson, G. W., Hugenholtz, P., Stocker, R., Seymour, J. R. & Riemann, Lasse, 2022, In: ISME Journal. 16, 11, p. 2525-2534 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  58. Published

    Chord: an ensemble machine learning algorithm to identify doublets in single-cell RNA sequencing data

    Xiong, K., Zhou, H., Lin, C., Yin, J., Kristiansen, Karsten, Yang, H. & Li, G., 2022, In: Communications Biology . 5, 11 p., 510.

    Research output: Contribution to journal › Journal article › Research › peer-review

  59. Published

    Chromatin modifier HUSH co-operates with RNA decay factor NEXT to restrict transposable element expression

    Garland, W., Müller, I., Wu, M., Schmid, M., Imamura, K., Rib, Leonor, Sandelin, Albin Gustav, Helin, K. & Jensen, T. H., 2022, In: Molecular Cell. 82, 9, p. 1691-1707.e8

    Research output: Contribution to journal › Journal article › Research › peer-review

  60. Published

    Chromosome evolution and the genetic basis of agronomically important traits in greater yam

    Bredeson, J. V., Lyons, J. B., Oniyinde, I. O., Okereke, N. R., Kolade, O., Nnabue, I., Nwadili, C. O., Hřibová, E., Parker, M., Nwogha, J., Shu, S., Carlson, J., Kariba, R., Muthemba, S., Knop, K., Barton, G. J., Sherwood, A. V., Lopez-Montes, A., Asiedu, R., Jamnadass, R. & 13 others, Muchugi, A., Goodstein, D., Egesi, C. N., Featherston, J., Asfaw, A., Simpson, G. G., Doležel, J., Hendre, P. S., Van Deynze, A., Kumar, P. L., Obidiegwu, J. E., Bhattacharjee, R. & Rokhsar, D. S., 2022, In: Nature Communications. 13, 16 p., 2001.

    Research output: Contribution to journal › Journal article › Research › peer-review

  61. Published

    Chromosome-scale assembly and whole-genome sequencing of 266 giant panda roundworms provide insights into their evolution, adaptation and potential drug targets

    Han, L., Lan, T., Li, D., Li, H., Deng, L., Peng, Z., He, S., Zhou, Y., Han, R., Li, L., Lu, Y., Lu, H., Wang, Q., Yang, S., Zhu, Y., Huang, Y., Cheng, X., Yu, J., Wang, Y., Sun, H. & 8 others, Chai, H., Yang, H., Xu, X., Lisby, Michael, Liu, Q., Kristiansen, Karsten, Liu, Huan & Hou, Z., 2022, In: Molecular Ecology Resources. 22, 2, p. 768-785 18 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  62. Published

    Chromosome-scale haplotype-resolved pangenomics

    Garg, S., Balboa, Renzo Fidel Ferdinando & Kuja, J., 2022, In: Trends in Genetics. 38, 11, p. 1103-1107 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  63. Published

    Ciliary flows in corals ventilate target areas of high photosynthetic oxygen production

    Pacherres, Cesar, Ahmerkamp, S., Koren, K., Richter, C. & Holtappels, M., 2022, In: Current Biology. 32, 19, p. 4150-4158.e3 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  64. Published

    Circle-Seq reveals genomic and disease-specific hallmarks in urinary cell-free extrachromosomal circular DNAs

    Lv, W., Pan, X., Han, P., Wang, Z., Feng, W., Xing, X., Wang, Q., Qu, K., Zeng, Y., Zhang, C., Xu, Z., Li, Y., Zheng, T., Lin, L., Liu, C., Liu, X., Li, H., Henriksen, R. A., Bolund, L., Lin, L. & 7 others, Jin, X., Yang, H., Zhang, X., Yin, T., Regenberg, Birgitte, He, F. & Luo, Y., 2022, In: Clinical and Translational Medicine. 12, 4, 16 p., e817.

    Research output: Contribution to journal › Journal article › Research › peer-review

  65. Published

    Circular DNA in the human germline and its association with recombination

    Henriksen, Rasmus Henrik Amund, Jenjaroenpun, P., Sjøstrøm, I. B., Jensen, Kristian HR, Prada Luengo, Inigo, Wongsurawat, T., Nookaew, I. & Regenberg, Birgitte, 2022, In: Molecular Cell. 82, 1, p. 209-217.e7

    Research output: Contribution to journal › Journal article › Research › peer-review

  66. Published

    Circumpolar patterns of Arctic freshwater fish biodiversity: A baseline for monitoring

    Laske, S. M., Amundsen, P., Christoffersen, Kirsten Seestern, Erkinaro, J., Guðbergsson, G., Hayden, B., Heino, J., Holmgren, K., Kahilainen, K. K., Lento, J., Orell, P., Östergren, J., Power, M., Rafikov, R., Romakkaniemi, A., Svenning, M., Swanson, H., Whitman, M. & Zimmerman, C. E., 2022, In: Freshwater Biology. 67, 1, p. 176-193 18 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  67. Published

    Classification of pig calls produced from birth to slaughter according to their emotional valence and context of production: [Inkl. correction]

    Briefer, Elodie, Sypherd, C. C., Linhart, P., Leliveld, L. M. C., de la Torre, M. P., Read, E. R., Guérin, C., Deiss, V., Monestier, C., Rasmussen, J. H., Špinka, M., Düpjan, S., Boissy, A., Janczak, A. M., Hillmann, E. & Tallet, C., 2022, In: Scientific Reports. 12, 10 p., 3409.

    Research output: Contribution to journal › Journal article › Research › peer-review

  68. Published

    Clinical application of high-throughput sequencing technology in prenatal screening and diagnosis of birth defects

    ZENG, F., 2022, Department of Biology, Faculty of Science, University of Copenhagen. 118 p.

    Research output: Book/Report › Ph.D. thesis › Research

  69. Published

    Co-evolution of drug resistance and broadened substrate recognition in HIV protease variants isolated from an Escherichia coli genetic selection system

    Koivisto, J. M., Poulsen, N. R., Larsen, B. S., Weibull, M. G. M., Stein, Amelie, Doro, F., Winther, Jakob R., Lindorff-Larsen, Kresten & Willemoës, Martin, 2022, In: The Biochemical journal. 479, 4, p. 479-501

    Research output: Contribution to journal › Journal article › Research › peer-review

  70. Published

    Combined berberine and probiotic treatment as an effective regimen for improving postprandial hyperlipidemia in type 2 diabetes patients: a double blinded placebo controlled randomized study

    Wang, S., Ren, H., Zhong, H., Zhao, X., Li, C., Ma, J., Gu, X., Xue, Y., Huang, S., Yang, J., Chen, L., Chen, G., Qu, S., Liang, J., Qin, L., Huang, Q., Peng, Y., Li, Q., Wang, X., Zou, Y. & 10 others, Shi, Z., Li, X., Li, T., Yang, H., Lai, S., Xu, G., Li, J., Zhang, Y., Gu, Y. & Wang, W., 2022, In: Gut Microbes. 14, 1, 18 p., 2003176.

    Research output: Contribution to journal › Journal article › Research › peer-review

  71. Published

    Combining reverse osmosis and microbial degradation for remediation of drinking water contaminated with recalcitrant pesticide residue

    Schostag, M. D., Gobbi, Alex, Fini, M. N., Ellegaard-Jensen, L., Aamand, J., Hansen, Lars Hestbjerg, Muff, J. & Albers, C. N., 2022, In: Water Research. 216, 12 p., 118352.

    Research output: Contribution to journal › Journal article › Research › peer-review

  72. Published

    Comparative Analyses of 3,654 Plastid Genomes Unravel Insights Into Evolutionary Dynamics and Phylogenetic Discordance of Green Plants

    Yang, T., Sahu, S. K., Yang, L., Liu, Y., Mu, W., Liu, X., Strube, M. L., Liu, Huan & Zhong, B., 2022, In: Frontiers in Plant Science. 13, 13 p., 808156.

    Research output: Contribution to journal › Journal article › Research › peer-review

  73. Published

    Comparative Genomic and Metabolomic Analysis of Termitomyces Species Provides Insights into the Terpenome of the Fungal Cultivar and the Characteristic Odor of the Fungus Garden of Macrotermes natalensis Termites

    Kreuzenbeck, N. B., Seibel, E., Schwitalla, J. W., Fricke, J., Conlon, B. H., Schmidt, Suzanne, Hammerbacher, A., Köllner, T. G., Poulsen, Michael, Hoffmeister, D., Beemelmanns, C. & Pupo, M. T. (ed.), 2022, In: mSystems. 7, 1, 16 p., e01214-21.

    Research output: Contribution to journal › Journal article › Research › peer-review

  74. Published

    Comparative phylogeography study reveals introgression and incomplete lineage sorting during rapid diversification of Rhodiola

    You, J., Lougheed, S. C., Zhao, Y., KU, thw266, Liu, W., Lu, F., Wang, Y., Zhang, W., Yang, J., Qiong, L. & Song, Z., 2022, In: Annals of Botany. 129, 2, p. 185-200 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  75. Published

    Comparative proteomics and secretomics revealed virulence, and coresistance-related factors in non O1/O139 Vibrio cholerae recovered from 16 species of consumable aquatic animals

    Shan, X., Fu, J., Li, X., Peng, Xu & Chen, L., 2022, In: Journal of Proteomics. 251, 15 p., 104408.

    Research output: Contribution to journal › Journal article › Research › peer-review

  76. Published

    Computational identification of signals predictive for nuclear RNA exosome degradation pathway targeting

    Wu, M., Schmid, M., Jensen, T. H. & Sandelin, Albin Gustav, 2022, In: NAR Genomics and Bioinformatics. 4, 3, 18 p., lqac071.

    Research output: Contribution to journal › Journal article › Research › peer-review

  77. Published

    Conflicts between large carnivores and local pastoralists around Niokolo Koba National Park, Senegal

    Gueye, M., Van Cauteren, D., Mengual, L., Pellaton, R., Leirs, H., Bertola, Laura & de Iongh, H., 2022, In: European Journal of Wildlife Research. 68, 1, 11 p., 9.

    Research output: Contribution to journal › Journal article › Research › peer-review

  78. Published

    Conformational ensembles of intrinsically disordered proteins and flexible multidomain proteins

    Thomasen, Emil & Lindorff-Larsen, Kresten, 2022, In: Biochemical Society Transactions. 50, 1, p. 541-554 14 p.

    Research output: Contribution to journal › Review › Research › peer-review

  79. Published

    Conformational heterogeneity of UCAAUC RNA oligonucleotide from molecular dynamics simulations, SAXS, and NMR experiments

    Bergonzo, C., Grishaev, A. & Bottaro, S., 2022, In: RNA. 28, 7, p. 937-946 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  80. Published

    Confusion will be my epitaph: Genome-scale discordance stifles phylogenetic resolution of Holothuroidea

    Koch, N. M., Tilic, E., Miller, A. K., Stiller, Josefin & Rouse, G. W., 2022, bioRxiv, 42 p.

    Research output: Working paper › Preprint › Research

  81. Published

    Conservation genomics of the endangered Seychelles Magpie-Robin (Copsychus sechellarum): a unique insight into the history of a precious endemic bird

    Cavill, Emily Louisa, Gopalakrishnan, Shyam, Puetz, Lara Christine, Ribeiro, Â. M., Mak, Sarah Siu Tze, Rodrigues da Fonseca, Rute Andreia, Antunes Pacheco, George, Dunlop, B., Accouche, W., Shah, N., Zora, A., Calabrese, L., Genner, M., Jones, G., Guo, C., KU, thw266 & Gilbert, M Thomas P, 2022, In: Ibis. 164, 2, p. 396-410 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  82. Published

    Conserved conformational dynamics determine enzyme activity

    Torgeson, K. R., Clarkson, M. W., Granata, D., Lindorff-Larsen, Kresten, Page, R. & Peti, W., 2022, In: Science Advances. 8, 31, 10 p., eabo5546.

    Research output: Contribution to journal › Journal article › Research › peer-review

  83. Published

    Conserved degronome features governing quality control associated proteolysis

    Mashahreh, B., Armony, S., Johansson, Kristoffer Enøe, Chappleboim, A., Friedman, N., Gardner, R. G., Hartmann-Petersen, Rasmus, Lindorff-Larsen, Kresten & Ravid, T., 2022, In: Nature Communications. 13, 1, 13 p., 7588.

    Research output: Contribution to journal › Journal article › Research › peer-review

  84. Published

    Conserved signalling components coordinate epidermal patterning and cuticle deposition in barley

    Liu, L., Jose, S. B., Campoli, C., Bayer, M. M., Sánchez-Diaz, M. A., McAllister, T., Zhou, Y., Eskan, M., Milne, L., Schreiber, M., Batstone, T., Bull, I. D., Ramsay, L., von Wettstein, Penny, Waugh, R., Hetherington, A. M. & McKim, S. M., 2022, In: Nature Communications. 13, 18 p., 6050.

    Research output: Contribution to journal › Journal article › Research › peer-review

  85. Published

    Context dependency of nucleotide probabilities and variants in human DNA

    Liang, Yuhu, Grønbæk, Christian, Fariselli, P. & Krogh, Anders, 2022, In: BMC Genomics. 23, 1, 15 p., 87.

    Research output: Contribution to journal › Journal article › Research › peer-review

  86. Published

    Context dependent prediction in DNA sequence using neural networks

    Grønbæk, Christian, Liang, Yuhu, Elliott, Desmond & Krogh, Anders, 2022, In: PeerJ. 10, 22 p., e13666.

    Research output: Contribution to journal › Journal article › Research › peer-review

  87. Published

    Contrasting Roles of DOP as a Source of Phosphorus and Energy for Marine Diazotrophs: [Correction]

    Filella, A., Riemann, Lasse, Van Wambeke, F., Pulido-Villena, E., Vogts, A., Bonnet, S., Grosso, O., Diaz, J. M., Duhamel, S. & Benavides, M., 2022, In: Frontiers in Marine Science. 9, 10 p., 923765.

    Research output: Contribution to journal › Journal article › Research › peer-review

  88. Published

    Contrasting phenology responses to climate warming across the northern extra-tropics

    Geng, X., Zhang, Y., Fu, Y. H., Hao, F., Janssens, I. A., Peñuelas, J., Piao, S., Tang, Jing, Wu, Z., Zhang, J., Zhang, X. & Stenseth, N. C., 2022, In: Fundamental Research. 2, 5, p. 708-715 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  89. Published

    Contrastive learning enables rapid mapping to multimodal single-cell atlas of multimillion scale

    YANG, Meng, Yang, Y., Xie, C., Ni, M., Liu, J., Yang, H., Mu, F. & Wang, J., 2022, In: Nature Machine Intelligence. 4, 8, p. 696-709 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  90. Published

    Convergent genomic signals of tail length reduction in multiple macaque lineages

    DENG, Y., 2022, Section for Ecology and Evolution, Department of Biology, University of Copenhagen. 164 p.

    Research output: Book/Report › Ph.D. thesis › Research

  91. Published

    Could Experimental Inflammation Provide Better Understanding of Migraines?

    Reducha, Philip Victor, Edvinsson, L. & Haanes, Kristian Agmund, 2022, In: Cells. 11, 15, 17 p., 2444.

    Research output: Contribution to journal › Review › Research › peer-review

  92. Published

    Coupling plant litter quantity to a novel metric for litter quality explains C storage changes in a thawing permafrost peatland

    Hough, M., Mccabe, S., Vining, S. R., Pickering Pedersen, E., Wilson, R. M., Lawrence, R., Chang, KY., Bohrer, G., Riley, W. J., Crill, P. M., Varner, R. K., Blazewicz, S. J., Dorrepaal, E., Tfaily, M. M., Saleska, S. R., Rich, V. I., Frolking, S., Hodgkins, S. B., Mccalley, C. K., Cooper, W. T. & 6 others, Chanton, J. P., Sullivan, M. B., Tyson, G. W., Brodie, E. L., Woodcroft, B. B. & Dominguez, S., 2022, In: Global Change Biology. 28, 3, p. 950-968

    Research output: Contribution to journal › Journal article › Research › peer-review

  93. Published

    Critical Assessment of Metagenome Interpretation: the second round of challenges

    Meyer, F., Fritz, A., Deng, Z. L., Koslicki, D., Lesker, T. R., Gurevich, A., Robertson, G., Alser, M., Antipov, D., Beghini, F., Bertrand, D., Brito, J. J., Brown, C. T., Buchmann, J., Buluç, A., Chen, B., Chikhi, R., Clausen, P. T. L. C., Cristian, A., Dabrowski, P. W. & 83 others, Darling, A. E., Egan, R., Eskin, E., Georganas, E., Goltsman, E., Gray, M. A., Hansen, Lars Hestbjerg, Hofmeyr, S., Huang, P., Irber, L., Jia, H., Jørgensen, T. S., Kieser, S. D., Klemetsen, T., Kola, A., Kolmogorov, M., Korobeynikov, A., Kwan, J., LaPierre, N., Lemaitre, C., Li, C., Limasset, A., Malcher-Miranda, F., Mangul, S., Marcelino, V. R., Marchet, C., Marijon, P., Meleshko, D., Mende, D. R., Milanese, A., Nagarajan, N., Nissen, Jakob Nybo, Nurk, S., Oliker, L., Paoli, L., Peterlongo, P., Piro, V. C., Porter, J. S., Rasmussen, Simon, Rees, E. R., Reinert, K., Renard, B., Robertsen, E. M., Rosen, G. L., Ruscheweyh, H. J., Sarwal, V., Segata, N., Seiler, E., Shi, L., Sun, F., Sunagawa, S., Sørensen, Søren Johannes, Thomas, A., Tong, C., Trajkovski, M., Tremblay, J., Uritskiy, G., Vicedomini, R., Wang, Z., Wang, Z., Wang, Z., Warren, A., Willassen, N. P., Yelick, K., You, R., Zeller, G., Zhao, Z., Zhu, S., Zhu, J., Garrido-Oter, R., Gastmeier, P., Hacquard, S., Häußler, S., Khaledi, A., Maechler, F., Mesny, F., Radutoiu, S., Schulze-Lefert, P., Smit, N., Strowig, T., Bremges, A., Sczyrba, A. & McHardy, A. C., 2022, In: Nature Methods. 19, 4, p. 429-440

    Research output: Contribution to journal › Journal article › Research › peer-review

  94. Published

    Cross-species discrimination of vocal expression of emotional valence by Equidae and Suidae

    Maigrot, A., Hillmann, E. & Briefer, Elodie, 2022, In: BMC Biology. 20, 14 p., 106.

    Research output: Contribution to journal › Journal article › Research › peer-review

  95. Published

    Cryo-EM structure of the human NKCC1 transporter reveals mechanisms of ion coupling and specificity

    Neumann, C., Rosenbæk, L. L., Flygaard, R. K., Habeck, M., Karlsen, J. L., Wang, Y., Lindorff-Larsen, Kresten, Gad, H. H., Hartmann, R., Lyons, J. A., Fenton, R. A. & Nissen, P., 2022, In: EMBO Journal. 41, 23, 15 p., e110169.

    Research output: Contribution to journal › Journal article › Research › peer-review

  96. Published

    Current challenges in understanding the role of enhancers in disease

    Zaugg, J. B., Sahlén, P., Andersson, Robin, Alberich-Jorda, M., de Laat, W., Deplancke, B., Ferrer, J., Mandrup, S., Natoli, G., Plewczynski, D., Rada-Iglesias, A. & Spicuglia, S., 2022, In: Nature Structural and Molecular Biology. 29, 12, p. 1148-1158 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  97. Published

    DNA Motifs and an Accessory CRISPR Factor Determine Cas1 Binding and Integration Activity in Sulfolobus islandicus

    Liu, T., Xu, Y., Wang, X., Ye, Q., Liu, Z., Zhang, Z., Liu, J., Yang, Y., Peng, Xu & Peng, N., 2022, In: International Journal of Molecular Sciences . 23, 17, 15 p., 10178.

    Research output: Contribution to journal › Journal article › Research › peer-review

  98. Published

    Danmarks Biodiversitet: før, nu og I morgen

    Sand-Jensen, Kaj & Schou, J. C., 2022, 1 ed. København: Gad. 240 p.

    Research output: Book/Report › Book › Communication

  99. Published

    De Novo Assembly of 20 Chicken Genomes Reveals the Undetectable Phenomenon for Thousands of Core Genes on Microchromosomes and Subtelomeric Regions

    Li, M., Sun, C., Xu, N., Bian, P., Tian, X., Wang, X., Wang, Y., Jia, X., Heller, R., Wang, M., Wang, F., Dai, X., Luo, R., Guo, Y., Wang, X., Yang, P., Hu, D., Liu, Z., Fu, W., Zhang, S. & 10 others, Li, X., Wen, C., Lan, F., Siddiki, A. Z., Suwannapoom, C., Zhao, X., Nie, Q., Hu, X., Jiang, Y. & Yang, N., 2022, In: Molecular Biology and Evolution. 39, 4, 16 p., msac066.

    Research output: Contribution to journal › Journal article › Research › peer-review

  100. Published

    De novo transcriptome sequencing of the northern fowl mite, Ornithonyssus sylviarum, shed light on parasitiform poultry mites evolution and its chemoreceptor repertoires

    Bhowmick, B., Chen, H., Lozano-Fernandez, J., Vizueta Moraga, Joel, Ignell, R. & Han, Q., 2022, In: Parasitology Research. 121, 2, p. 521-535 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  101. Published

    Deciphering bacteria associated with a pre-parasitic stage of the root-knot nematode Meloidogyne hapla in nemato-suppressive and nemato-conducive soils

    Topalović, O., Santos, S. S., Heuer, H., Nesme, Joseph, Kanfra, X., Hallmann, J., Sørensen, Søren Johannes & Vestergård, M., 2022, In: Applied Soil Ecology. 172, 9 p., 104344.

    Research output: Contribution to journal › Journal article › Research › peer-review

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