Department of Biology

 

 
  1. 2021
  2. Published

    Comparative Genomics Analysis of Keratin-Degrading Chryseobacterium Species Reveals Their Keratinolytic Potential for Secondary Metabolite Production

    Kang, D., Shoaie, S., Jacquiod, S., Sørensen, Søren Johannes & Ledesma-Amaro, R., 2021, In: Microorganisms. 9, 5, 15 p., 1042.

    Research output: Contribution to journalJournal articleResearchpeer-review

  3. Published

    Comparative Genomics of Novel Agrobacterium G3 Strains Isolated From the International Space Station and Description of Agrobacterium tomkonis sp. nov.

    Singh, N. K., Lavire, C., Nesme, Joseph, Vial, L., Nesme, X., Mason, C. E., Lassalle, F. & Venkateswaran, K., 2021, In: Frontiers in Microbiology. 12, 15 p., 765943.

    Research output: Contribution to journalJournal articleResearchpeer-review

  4. Published

    Comparative analysis of the alveolar microbiome in COPD, ECOPD, Sarcoidosis, and ILD patients to identify respiratory illnesses specific microbial signatures

    Gupta, S., Shariff, M., Chaturvedi, G., Sharma, A., Goel, N., Yadav, M., Mortensen, M. S., Sørensen, Søren Johannes, Mukerji, M. & Chauhan, N. S., 2021, In: Scientific Reports. 11, 11 p., 3963.

    Research output: Contribution to journalJournal articleResearchpeer-review

  5. Published

    Comparative bioacoustics: a roadmap for quantifying and comparing animal sounds across diverse taxa

    Odom, K. J., Araya-Salas, M., Morano, J. L., Ligon, R. A., Leighton, G. M., Taff, C. C., Dalziell, A. H., Billings, A. C., Germain, Ryan Ross, Pardo, M., de Andrade, L. G., Hedwig, D., Keen, S. C., Shiu, Y., Charif, R. A., Webster, M. S. & Rice, A. N., 2021, In: Biological Reviews. 96, 4, p. 1135-1159 25 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  6. Published

    Comparative transcriptome analysis reveals key epigenetic targets in SARS-CoV-2 infection

    Salgado-Albarrán, M., Navarro-Delgado, E. I., Del Moral-Morales, A., Alcaraz, N., Baumbach, J., González-Barrios, R. & Soto-Reyes, E., 2021, In: n p j Systems Biology and Applications. 7, 14 p., 21.

    Research output: Contribution to journalJournal articleResearchpeer-review

  7. Published

    Comparison of Delivery Methods in Phage Therapy against Flavobacterium columnare Infections in Rainbow Trout

    Kunttu, H. M. T., Runtuvuori-Salmela, A., Middelboe, Mathias, Clark, J. & Sundberg, L. R., 2021, In: Antibiotics. 10, 8, 19 p., 914.

    Research output: Contribution to journalJournal articleResearchpeer-review

  8. Published

    Competition-based screening helps to secure the evolutionary stability of a defensive microbiome

    Worsley, S. F., Innocent, T. M., Holmes, N. A., Al-Bassam, M. M., Schiøtt, M., Wilkinson, B., Murrell, J. C., Boomsma, Jacobus J., Yu, D. W. & Hutchings, M. I., 2021, In: BMC Biology. 19, 20 p., 205.

    Research output: Contribution to journalJournal articleResearchpeer-review

  9. Published

    Comprehensive analysis of genetic and clinical characteristics of 30 patients with X-linked juvenile retinoschisis in China

    Gao, F., Dong, J., Wang, D., Chen, F., Hu, F., Chang, Q., Xu, P., Liu, W., Li, J., Huang, Y., Wu, J. & Xu, G., 2021, In: Acta Ophthalmologica. 99, 4, p. e470-e479 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  10. Published

    Computational and Experimental Assessment of Backbone Templates for Computational Redesign of the Thioredoxin Fold

    Marin, Frederikke Isa, Johansson, Kristoffer Enøe, O'Shea, Charlotte, Lindorff-Larsen, Kresten & Winther, Jakob R., 2021, In: The Journal of Physical Chemistry B. 125, 40, p. 11141-11149

    Research output: Contribution to journalJournal articleResearchpeer-review

  11. Published
  12. Published

    Computational methods for chromosome-scale haplotype reconstruction

    Garg, S., 2021, In: Genome Biology. 22, 24 p., 101.

    Research output: Contribution to journalReviewResearchpeer-review

  13. Published

    Conformational Ensembles of Noncoding Elements in the SARS-CoV-2 Genome from Molecular Dynamics Simulations

    Bottaro, S., Bussi, G. & Lindorff-Larsen, Kresten, 2021, In: Journal of the American Chemical Society. 143, 22, p. 8333-8343

    Research output: Contribution to journalJournal articleResearchpeer-review

  14. Published

    Connecting the αα-hubs: same fold, disordered ligands, new functions

    Staby, L., Bugge, K., Falbe-Hansen, R. G., Salladini, Edoardo, Skriver, Karen & Kragelund, Birthe Brandt, 2021, In: Cell Communication and Signaling. 19, 5 p., 2.

    Research output: Contribution to journalLetterResearchpeer-review

  15. Published

    Conservation of Long-tailed Macaques: Implications of the Updated IUCN Status and the CoVID-19 Pandemic

    Hansen, Malene Friis, Gill, M., Nawangsari, V. A., Sanchez, K. L., Cheyne, S. M., Nijman, V. & Fuentes, A., 2021, In: Primate Conservation. 35, 11 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  16. Published

    Conservative route to genome compaction in a miniature annelid

    Martín-Durán, J. M., Vellutini, B. C., Marlétaz, F., Cetrangolo, V., Cvetesic, N., Thiel, D., Henriet, S., Grau-Bové, X., Carrillo-Baltodano, A. M., Gu, W., Kerbl, A., Marquez, Y., Bekkouche, N., Chourrout, D., Gómez-Skarmeta, J. L., Irimia, M., Lenhard, B., Worsaae, Katrine & Hejnol, A., 2021, In: Nature Ecology and Evolution. 5, 2, p. 231-242

    Research output: Contribution to journalJournal articleResearchpeer-review

  17. Published

    Contingency and determinism in the evolution of bird song sound frequency

    Friis, J. I., Dabelsteen, Torben & Cardoso, G. C., 2021, In: Scientific Reports. 11, 9 p., 11600.

    Research output: Contribution to journalJournal articleResearchpeer-review

  18. Published

    Contrasting responses of major and minor volatile compounds to warming and gall-infestation in the Arctic willow Salix myrsinites

    Swanson, L., Li, Tao & Rinnan, Riikka, 2021, In: Science of the Total Environment. 793, 10 p., 148516.

    Research output: Contribution to journalJournal articleResearchpeer-review

  19. Published

    Contrasting use of space by two migratory Afro-Palearctic warblers on their African non-breeding grounds

    Mostafa, D. A. A., Willemoes, M., Salewski, V., Ortvad, T. E., Dabelsteen, Torben & Thorup, Kasper, 2021, In: Journal of Ornithology. 162, 3, p. 813-821 9 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  20. Published

    Contributions to OH reactivity from unexplored volatile organic compounds measured by PTR-ToF-MS – a case study in a suburban forest of the Seoul metropolitan area during the Korea–United States Air Quality Study (KORUS-AQ) 2016

    Sanchez, D., Seco, Roger, Gu, D., Guenther, A., Mak, J., Lee, Y., Kim, D., Ahn, J., Blake, D., Herndon, S., Jeong, D., Sullivan, J. T., Mcgee, T., Park, R. & Kim, S., 2021, In: Atmospheric Chemistry and Physics. 21, 8, p. 6331-6345 15 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  21. Published

    Correlated transcriptional responses provide insights into the synergy mechanisms of the furazolidone, vancomycin, and sodium deoxycholate triple combination in escherichia coli

    Olivera, Catrina Diane Peralta, Cox, M. P., Rowlands, G. J. & Rakonjac, J., 2021, In: mSphere. 6, 5, 14 p., e00627-21.

    Research output: Contribution to journalJournal articleResearchpeer-review

  22. Published

    Cruise Report EUROFLEETS2 ESAW-2 ‘Evolution and spreading of the Southern Adriatic Waters'(ESAW) ESAW-2

    Kovacevic, V., Bensi, M., Giani, M., Dellisanti, Walter, Urbini, L., Pacciaroni, M., Muslim, S., Mihanovic, H., Pavlovic, M. & Karthauser, C., 2021, Relazione Interna OGS 2021/50 OCE 21.

    Research output: Chapter in Book/Report/Conference proceedingBook chapterCommunication

  23. Published

    Crustacean Fauna of the Aral Sea and its Relation to Ichthyofauna During the Modern Regression Crisis and Efforts at Restoration

    Plotnikov, I. S., Aladin, N. V., Mossin, J. & Høeg, Jens Thorvald, 2021, In: Zoological Studies. 60, 24 p., 25.

    Research output: Contribution to journalJournal articleResearchpeer-review

  24. Published

    Cryo-EM reveals the architecture of placental malaria VAR2CSA and provides molecular insight into chondroitin sulfate binding

    Wang, Kaituo, Dagil, Robert, Lavstsen, Thomas, Misra, S. K., Spliid, C. B., Wang, Y., Gustavsson, Tobias, Sandoval, D. R., Vidal-Calvo, E. E., Choudhary, Swati, Agerbæk, Mette Ørskov, Lindorff-Larsen, Kresten, Nielsen, Morten Agertoug, Theander, Thor Grundtvig, Sharp, J. S., Clausen, Thomas Mandel, Gourdon, Pontus Emanuel & Salanti, Ali, 2021, In: Nature Communications. 12, 1, 10 p., 2956.

    Research output: Contribution to journalJournal articleResearchpeer-review

  25. Published

    DEER-PREdict: Software for efficient calculation of spin-labeling EPR and NMR data from conformational ensembles

    Tesei, Giulio, Martins, J. M., Kunze, M. B. A., Wang, Y., Crehuet, R. & Lindorff-Larsen, Kresten, 2021, In: PLOS Computational Biology. 17, 1, 18 p., e1008551.

    Research output: Contribution to journalJournal articleResearchpeer-review

  26. Published

    DNA Double-Strand Break-Induced Gene Amplification in Yeast

    Strucko, T., Lisby, Michael & Mortensen, U. H., 2021, Homologous Recombination: Methods and Protocols. Aguilera, A. & Carreira, A. (eds.). Humana Press, p. 239-252 14 p. (Methods in Molecular Biology, Vol. 2153).

    Research output: Chapter in Book/Report/Conference proceedingBook chapterResearchpeer-review