Department of Biology

 

 
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  1. Published

    Where is the field of autophagy research heading?

    Abeliovich, H., Debnath, J., Ding, W. X., Jackson, W. T., Kim, D. H., Klionsky, D. J., Ktistakis, N., Margeta, M., Münz, C., Petersen, Morten, Sadoshima, J. & Vergne, I., 2023, In: Autophagy. 19, 4, 6 p.

    Research output: Contribution to journal › Editorial › Research

  2. Published

    Where sociality and relatedness diverge: the genetic basis for hierarchical social organization in African elephants

    Wittemyer, G., Okello, J. B. A., Rasmussen, H. B., Arctander, P., Nyakaana, S., Douglas-Hamilton, I. & Siegismund, Hans Redlef, 2009, In: PROCEEDINGS OF THE ROYAL SOCIETY OF LONDON SERIES B-CONTAINING PAPERS OF A BIOLOGICAL CHARACTER. 276, 1672, p. 3513-3521

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Which factors regulate seagrass growth and distribution? (Chapter 4)

    Greve, T. M. & Binzer, T., 2004, European seagrasses: an introduction to monitoring and management. København: The M, p. 19-23

    Research output: Chapter in Book/Report/Conference proceeding › Report chapter › Research

  4. Published

    Who climbs the tryptophan ladder? On the structure and function of the WSXWS motif in cytokine receptors and thrombospondin repeats

    Olsen, Johan Gotthardt & Kragelund, Birthe Brandt, 2014, In: Cytokine & Growth Factor Reviews. 25, 3, p. 337-341 5 p.

    Research output: Contribution to journal › Review › Research › peer-review

  5. Published

    Whole Genome Sequencing in the Evaluation of Fetal Structural Anomalies: A Parallel Test with Chromosomal Microarray Plus Whole Exome Sequencing

    Zhou, J., Yang, Z., Sun, J., Liu, L., Zhou, X., Liu, F., Xing, Y., Cui, S., Xiong, S., Liu, X., Yang, Y., Wei, X., Zou, G., Wang, Z., Wei, X., Wang, Y., Zhang, Y., Yan, S., Wu, F., Zeng, F. & 4 others, Wang, J., Duan, T., Peng, Z. & Sun, L., 2021, In: Genes. 12, 3, 14 p., 376.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Whole blood-oxygen binding properties of four cold-temperate marine fishes: blood affinity is independent of pH-dependent binding, routine swimming performance, and environmental hypoxia.

    Herbert, N. A., Skov, P. V., Wells, R. M. G. & Steffensen, John Fleng, 2006, In: Physiological and Biochemical Zoology. 79, 5, p. 909-18 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Whole exome sequencing identifies frequent somatic mutations in cell-cell adhesion genes in chinese patients with lung squamous cell carcinoma

    Li, C., Gao, Z., Li, F., Li, X., Sun, Y., Wang, M., Li, D., Wang, R., Li, F., Fang, R., Pan, Y., Luo, X., He, J., Zheng, L., Xia, J., Qiu, L., He, J., Ye, T., Zhang, R., He, M. & 32 others, Zhu, M., Hu, H., Shi, T., Zhou, X., Sun, M., Tian, S., Zhou, Y., Wang, Q., Chen, L., Yin, G., Lu, J., Wu, R., Guo, G., Li, Y., Hu, X., Li, L., Asan, Wang, Q., Yin, Y., Feng, Q., Wang, B., Wang, H., Wang, M., Yang, X., Zhang, X., Yang, H., Jin, L., Wang, C., Ji, H., Chen, H., Wang, J. & Wei, Q., 2015, In: Scientific Reports. 5, 11 p., 14237 .

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Whole exome sequencing of insulinoma reveals recurrent T372R mutations in YY1

    Cao, Y., Gao, Z., Li, L., Jiang, X., Shan, A., Cai, J., Peng, Y., Li, Y., Jiang, X., Huang, X., Wang, J., Wei, Q., Qin, G., Zhao, J., Jin, X., Liu, L., Li, Y., Wang, W., Wang, J. & Ning, G., 2013, In: Nature Communications. 4, 6 p., 2810.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Whole genome DNA methylation analysis based on high throughput sequencing technology

    Li, N., Ye, M., Li, Y., Yan, Z., Butcher, L. M., Sun, J., Han, X., Chen, Q., Zhang, X. & Wang, J., 2010, In: Methods. 52, 3, p. 203-212 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Whole genome analyses based on single, field collected spores of the arbuscular mycorrhizal fungus Funneliformis geosporum

    Sahraei, S. E., Sánchez-García, M., Montoliu-Nerin, M., Manyara, D., Bergin, C., Rosendahl, Søren & Rosling, A., 2022, In: Mycorrhiza. 32, 5-6, p. 361-371 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Whole genome identification, phylogeny and evolution of the cytochrome P450 family 2 (CYP2) sub-families in birds

    Almeida, D., Maldonado, E., Khan, I., Silva, L., Gilbert, M Thomas P, KU, thw266, Jarvis, E. D., O'Brien, S. J., Johnson, W. E. & Antunes, A., 2016, In: Genome Biology and Evolution. 8, 4, p. 1115-1131 17 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Whole grain-rich diet reduces body weight and systemic low-grade inflammation without inducing major changes of the gut microbiome: a randomised cross-over trial

    Roager, H. M., Vogt, J. K., Kristensen, M. B., Hansen, L. B. S., Ibrügger, S., Mærkedahl, R. B., Bahl, M. I., Lind, M. V., Nielsen, R. L., Frøkiær, H., Gøbel, R. J., Landberg, R., Ross, A. B., Brix, S., Holck, J., Meyer, A. S., Sparholt, M. H., Christensen, A. F., Carvalho, V., Hartmann, B. & 18 others, Holst, Jens Juul, Rumessen, J. J., Linneberg, Allan René, Sicheritz-Pontén, T., Dalgaard, M. D., Blennow, Andreas, Frandsen, H. L., Villas-Bôas, S., Kristiansen, Karsten, drb459, drb459, Hansen, Torben, Ekstrøm, Claus Thorn, Ritz, C., Nielsen, H. B., Pedersen, Oluf Borbye, Gupta, R., Lauritzen, Lotte & Licht, T. R., Jan 2019, In: Gut. 68, 1, p. 83-93 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Whole-cell patch-clamp studies of exocrine glands from frog skin (Rana esculenta)

    Sørensen, Jakob Balslev & Larsen, Erik Hviid, 1997, In: FASEB Journal. 11, 3, p. A306

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Whole-exome sequencing identifies a polymorphism in the BMP5 gene associated with SSRI treatment response in major depression

    Tammiste, A., Jiang, T., Fischer, K., Mägi, R., Krjutskov, K., Pettai, K., Esko, T., Li, Y., Tansey, K. E., Carroll, L. S., Uher, R., McGuffin, P., Vosa, U., Tsernikova, N., Saria, A., Ng, P. C., Eller, T., Vasar, V., Nutt, D. J., Maron, E. & 2 others, Wang, J. & Metspalu, A., 2013, In: Journal of Psychopharmacology. 27, 10, p. 915-920 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Whole-exome sequencing of 2,000 Danish individuals and the role of rare coding variants in type 2 diabetes

    Lohmueller, K. E., Sparsø, T. H., Li, Q., Galijatovic, E. A. A., Korneliussen, T. S., Albrechtsen, A., Banasik, K., Grarup, N., Hallgrimsdottir, I., Kiil, K., Oskari Kilpeläinen, T., Krarup, N. T., Pers, T. H., Sanchez, G., Hu, Y., DeGiorgio, M., Jørgensen, T., Sandbæk, A., Lauritzen, T., Brunak, S. & 6 others, Kristiansen, Karsten, Li, Y., Hansen, Torben, Wang, J., Nielsen, Rasmus & Pedersen, Oluf Borbye, 5 Dec 2013, In: American Journal of Human Genetics. 93, 6, p. 1072-1086 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Whole-genome analyses resolve early branches in the tree of life of modern birds

    Jarvis, E. D., Mirarab, S., Aberer, A. J., Li, B., Houde, P., Li, C., Ho, S. Y. W., Faircloth, B. C., Nabholz, B., Howard, J. T., Suh, A., Weber, C. C., Rodrigues da Fonseca, R. A., Li, J., Zhang, F., Li, H., Zhou, L., Narula, N., Liu, L., Ganapathy, G. & 85 others, Boussau, B., Bayzid, M. S., Zavidovych, V., Subramanian, S., Gabaldón, T., Capella-Gutiérrez, S., Huerta-Cepas, J., Rekepalli, B., Terkelsen, K. M., Schierup, M. H., Lindow, Bent Erik Kramer, Warren, W. C., Ray, D., Green, R. E., Bruford, M. W., Zhan, X., Dixon, A., Li, S., Li, N., Huang, Y., Derryberry, E. P., Bertelsen, Mads Frost, Sheldon, F. H., Brumfield, R. T., Mello, C. V., Lovell, P. V., Wirthlin, M., Schneider, M. P. C., Prosdocimi, F., Samaniego Castruita, J. A., Velazquez, A. M. V., Alfaro Nuñez, L. A., Campos, P., Petersen, Bent, Sicheritz-Ponten, T., Pas, A., Bailey, T., Scofield, P., Bunce, M., Lambert, D. M., Zhou, Q., Perelman, P., Driskell, A. C., Shapiro, B., Xiong, Z., Zeng, Y., Liu, S., Li, Z., Liu, B., Wu, K., Xiao, J., Yinqi, X., Zheng, Q., Zhang, Y., Yang, H., Wang, J., Smeds, L., Rheindt, F. E., Braun, M., Fjeldså, Jon, Orlando, L. A. A., Barker, F. K., Jønsson, Knud Andreas, Johnson, W., Koepfli, K. P., O'Brien, S., Haussler, D., Ryder, O. A., Rahbek, Carsten, Willerslev, Eske, Graves, G. R., Glenn, T. C., McCormack, J., Burt, D., Ellegren, H., Alström, P., Edwards, S. V., Stamatakis, A., Mindell, D. P., Cracraft, J., Braun, E. L., Warnow, T., Wang, J., Gilbert, M Thomas P & KU, thw266, 2014, In: Science. 346, 6215, p. 1320-1331 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Whole-genome and Transcriptome Sequencing of Prostate Cancer Identify New Genetic Alterations Driving Disease Progression

    Ren, S., Wei, G-H., Liu, D., Wang, L., Hou, Y., Zhu, S., Peng, L., Zhang, Q., Cheng, Y., Su, H., Zhou, X., Zhang, J., Li, F., Zheng, H., Zhao, Z., Yin, C., He, Z., Gao, X., Zhau, H. E., Chu, C-Y. & 42 others, Wu, J. B., Collins, C., Volik, S. V., Bell, R., Huang, J., Wu, K., Xu, D., Ye, D., Yu, Y., Zhu, L., Qiao, M., Lee, H., Yang, Y., Zhu, Y., Shi, X., Chen, R., Wang, Y., Xu, W., Cheng, Y., Xu, C., Gao, X., Zhou, T., Yang, B., Hou, J., Liu, L., Zhang, Z., Zhu, Y., Qin, C., Shao, P., Pang, J., Chung, L. W. K., Xu, J., Wu, C., Zhong, W., Xu, X., Li, Y., Zhang, X., Wang, J., Yang, H., Wang, J., Huang, H. & Sun, Y., 2018, In: European Urology. 73, 3, p. 322-339 18 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Whole-genome and whole-exome sequencing of bladder cancer identifies frequent alterations in genes involved in sister chromatid cohesion and segregation

    Guo, G., Sun, X., Chen, C., Wu, S., Huang, P., Li, Z., Dean, M., Huang, Y., Jia, W., Zhou, Q., Tang, A., Yang, Z., Li, X., Song, P., Zhao, X., Ye, R., Zhang, S., Lin, Z., Qi, M., Wan, S. & 36 others, Xie, L., Fan, F., Nickerson, M. L., Zou, X., Hu, X., Xing, L., Lv, Z., Mei, H., Gao, S., Liang, C., Gao, Z., Lu, J., Yu, Y., Liu, C., Li, L., Fang, X., Jiang, Z., Yang, J., Li, C., Zhao, X., Chen, J., Zhang, F., Lai, Y., Lin, Z., Zhou, F., Chen, H., Chan, H. C., Tsang, S., Theodorescu, D., Li, Y., Zhang, X., Wang, J., Yang, H., Gui, Y., Wang, J. & Cai, Z., 2013, In: Nature Genetics. 45, 12, p. 1459-1463 5 p.

    Research output: Contribution to journal › Letter › Research › peer-review

  19. Published

    Whole-genome bisulfite sequencing of multiple individuals reveals complementary roles of promoter and gene body methylation in transcriptional regulation

    Lou, S., Lee, H., Qin, H., Li, J., Gao, Z., Liu, X., Chan, L. L., Lam, V. K. L., So, W., Wang, Y., Lok, S., Wang, J., Ma, R. C. W., Tsui, S. K., Chan, J. C. N., Chan, T. & Yip, K. Y., 2014, In: Genome Biology (Online Edition). 15, 7, 21 p., 408.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Whole-genome resequencing of 445 Lactuca accessions reveals the domestication history of cultivated lettuce

    Wei, T., van Treuren, R., Liu, X., Zhang, Z., Chen, J., Liu, Y., Dong, S., Sun, P., Yang, T., Lan, T., Wang, X., Xiong, Z., Liu, Y., Wei, J., Lu, H., Han, S., Chen, J. C., Ni, X., Wang, J., Yang, H. & 5 others, Xu, X., Kuang, H., van Hintum, T., Liu, X. & Liu, H., 2021, In: Nature Genetics. 53, 5, p. 752-760

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Whole-genome sequence of Pseudomonas fluorescens EK007-RG4, a promising biocontrol agent against a broad range of bacteria, including the fire blight bacterium Erwinia amylovora

    Habibi, R., Tarighi, S., Behravan, J., Taheri, P., Kjøller, Annelise Helene, Brejnrod, A. D., Madsen, Jonas Stenløkke & Sørensen, Søren Johannes, 2017, In: Genome Announcements. 5, 13, 2 p., e00026-17.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Whole-genome sequence of a flatfish provides insights into ZW sex chromosome evolution and adaptation to a benthic lifestyle

    Chen, S., Zhang, G., Shao, C., Huang, Q., Liu, G., Zhang, P., Song, W., An, N., Chalopin, D., Volff, J-N., Hong, Y., Li, Q., Sha, Z., Zhou, H., Xie, M., Yu, Q., Liu, Y., Xiang, H., Wang, N., Wu, K. & 25 others, Yang, C., Zhou, Q., Liao, X., Yang, L., Hu, Q., Zhang, J., Meng, L., Jin, L., Tian, Y., Lian, J., Yang, J., Miao, G., Liu, S., Liang, Z., Yan, F., Li, Y., Sun, B., Zhang, H., Zhang, J., Zhu, Y., Du, M., Zhao, Y., Schartl, M., Tang, Q. & Wang, J., 2014, In: Nature Genetics. 46, 3, p. 253-262 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Whole-genome sequence of the Tibetan frog Nanorana parkeri and the comparative evolution of tetrapod genomes

    Sun, Y-B., Xiong, Z-J., Xiang, X-Y., Liu, S-P., Zhou, W-W., Tu, X-L., Zhong, L., Wang, L., Wu, D-D., Zhang, B-L., Zhu, C-L., Yang, M-M., Chen, H-M., Li, F., Zhou, L., Feng, S-H., Huang, C., Zhang, G., Irwin, D., Hillis, D. M. & 5 others, Murphy, R. W., Yang, H., Che, J., Wang, J. & Zhang, Y., 2015, In: Proceedings of the National Academy of Sciences of the United States of America. 112, 11, p. E1257-E1262 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Whole-genome sequence of the planarian Dugesia japonica combining Illumina and PacBio data

    Tian, Q., Guo, Q., Guo, Y., Luo, L., Kristiansen, Karsten, Han, Z., Fang, H. & Zhang, S., 2022, In: Genomics. 114, 2, 10 p., 110293.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Whole-genome sequence variation, population structure and demographic history of the Dutch population

    Francioli, L. C., Menelaou, A., Pulit, S. L., Van Dijk, F., Palamara, P. F., Elbers, C. C., Neerincx, P. B. T., Ye, K., Guryev, V., Kloosterman, W. P., Deelen, P., Abdellaoui, A., Van Leeuwen, E. M., Van Oven, M., Vermaat, M., Li, M., Laros, J. F. J., Karssen, L. C., Kanterakis, A., Amin, N. & 64 others, Hottenga, J. J., Lameijer, E., Kattenberg, M., Dijkstra, M., Byelas, H., Van Settenl, J., Van Schaik, B. D. C., Bot, J., Nijman, I. J., Renkens, I., Marscha, T., Schonhuth, A., Hehir-Kwa, J. Y., Handsaker, R. E., Polak, P., Sohail, M., Vuzman, D., Hormozdiari, F., Van Enckevort, D., Mei, H., Koval, V., Moed, M. H., Van der Velde, K. J., Rivadeneira, F., Estrada, K., Medina-Gomez, C., Isaacs, A., McCarroll, S. A., Beekrnan, M., De Craen, A. J. M., Suchiman, H. E. D., Hofman, A., Oostra, B., Uitterlinden, A. G., Willemsen, G., Plattee, M., Veldink, J. H., Van den Berg, L. H., Pitts, S. J., Potluri, S., Sundar, P., Cox, D. R., Sunyaev, S. R., Den Dunnen, J. T., Stoneking, M., De Knijff, P., Kayser, M., Li, Q., Li, Y., Du, Y., Chen, R., Cao, H., Li, N., Cao, S., Wang, J., Bovenberg, J. A., Peer, I., Slagboom, P. E., Van Duijn, C. M., Boomsma, D. I., Van Ommen, G. B., De Bakker, P. I. W., Swertz, M. A. & Wijmenga, C., 2014, In: Nature Genetics. 46, 8, p. 818-825 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

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