Department of Biology

 

 
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  1. Published

    Bacteriophages as Biocontrol Agents for Flavobacterium psychrophilum Biofilms and Rainbow Trout Infections

    Sundell, K., Landor, L., Castillo, D., Middelboe, Mathias & Wiklund, T., 2020, In: PHAGE: Therapy, Applications, and Research. 1, 4, p. 198-204 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  2. Published

    Bacteriophages: Emerging Applications in Medicine, Food, and Biotechnology

    Sohail, H. A., Coffey, A., Debrowska, K., Meyer, I. M., Middelboe, Mathias, Sohail, M. & Clokie, M. R. J., 2020, In: PHAGE: Therapy, Applications, and Research. 1, 2, p. 75-82 8 p.

    Research output: Contribution to journal › Conference article › Research › peer-review

  3. Published

    Bacteriophage resistance mechanisms in the fish pathogen Flavobacterium psychrophilum: linking genomic mutations to changes in bacterial virulence factors

    Castillo Bermúdez, D. E., Cristiansen, R. H., Dalsgaard, I., Madsen, L. & Middelboe, Mathias, 2015, In: Applied and Environmental Microbiology. 81, 3, p. 1157-1167 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Bacteriophage interactions with marine pathogenic Vibrios

    Kalatzis, Panagiotis, 2017, Department of Biology, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  5. Published

    Bacteriophage interactions with Vibrio anguillarum and the potential for phage therapy in marine aquaculture

    Rørbo, N. I., 2017, Department of Biology, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  6. Published

    Bacteriophage Resistance Affects Flavobacterium columnare Virulence Partly via Mutations in Genes Related to Gliding Motility and the Type IX Secretion System

    Kunttu, H. M. T., Runtuvuori-Salmela, A., Sundell, K., Wiklund, T., Middelboe, Mathias, Landor, L., Ashrafi, R., Hoikkala, V. & Sundberg, L., 2021, In: Applied and Environmental Microbiology. 87, 16, 19 p., e00812-21 .

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Bacteriophage Interactions with Marine Pathogenic Vibrios: Implications for Phage Therapy

    Kalatzis, Panagiotis, Castillo Bermúdez, D. E., Katharios, P. & Middelboe, Mathias, 2018, In: Antibiotics. 7, 1, 23 p., 15.

    Research output: Contribution to journal › Review › Research › peer-review

  8. Published

    Bacteriochlorophyllide c C-8(2) and C-12(1) Methyltransferases are essential for adaptation to low light in Chlorobaculum tepidum

    Chew, A. G. M., Frigaard, Niels-Ulrik & Bryant, D. A., 2007, In: Journal of Bacteriology.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Bacteriochlorophyllide c C-82 and C-121 methyltransferases are essential for adaptation to low light in Chlorobaculum tepidum

    Gomez Maqueo Chew, A., Frigaard, Niels-Ulrik & Bryant, D. A., 2007, In: Journal of Bacteriology. 189, 17, p. 6176-6184 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Bactericidal antibiotics increase hydroxyphenyl fluorescein signal by altering cell morphology

    Paulander, W., Wang, Y., Folkesson, A., Charbon, Godefroid, Løbner-Olesen, Anders & Ingmer, Hanne, 2014, In: P L o S One. 9, 3, 4 p., e92231.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Bacterial utilization of dissolved organic carbon (DOC) in coastal waters - determination of growth yield.

    Middelboe, Mathias, Nielsen, B. & Søndergaard, M., 1992, In: Arch. Hydrobiol. Beih.. 37, p. 51-61

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Bacterial utilization of dissolved free amino acids, dissolved combined amino acids and ammonium in the Delaware Bay estuary: effects of carbon and nitrogen limitation

    Middelboe, Mathias, Borch, N. H. & Kirchman, D. L., 1995, In: Marine Ecology - Progress Series. 128, p. 109-120 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Bacterial symbiont sharing in Megalomyrmex social parasites and their fungus-growing ant hosts

    Liberti, J., Sapountzis, P., Hansen, Lars Hestbjerg, Sørensen, Søren Johannes, Adams, R. M. M. & Boomsma, Jacobus J., 2015, In: Molecular Ecology. 24, 12, p. 3151-3169 19 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Bacterial social interactions and the emergence of community-intrinsic properties

    Madsen, Jonas Stenløkke, Sørensen, Søren Johannes & Burmølle, Mette, 2018, In: Current Opinion in Microbiology. 42, p. 104-109 6 p.

    Research output: Contribution to journal › Review › Research › peer-review

  15. Published

    Bacterial resistance to arsenic protects against protist killing

    Hao, X., Li, Xuan Ji, Pal, C., Hobman, J., Larsson, D. G. J., Saquib, Q., Alwathnani, H. A., Rosen, B. P., Zhu, Y. & Rensing, C., Apr 2017, In: BioMetals. 30, 2, p. 307-311 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Bacterial reduction of mercury in the high arctic

    Møller, A. K., 2010, Biologisk Institut: Museum Tusculanum. 64 p.

    Research output: Book/Report › Ph.D. thesis › Research

  17. Published

    Bacterial production determined by [3H]thymidine incorporation in field rhizospheres as evaluated by comparison to rhizodeposition

    Christensen, Henrik, Rønn, Regin, Ekelund, Flemming & Christensen, Søren, 1995, In: Soil Biology & Biochemistry. 27, 1, p. 93-99

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Bacterial production and respiration in suspended aggregates - a matter of the incubation method

    Ploug, H. & Grossart, H., 1999, In: Aguat.Microb.Ecol.. 20, p. 21-29

    Research output: Contribution to journal › Journal article › Research

  19. Published

    Bacterial production and growth efficiencies: Direct measurements on riverine aggregates

    Grossart, H. & Ploug, H., 2000, In: Limnology and Oceanography. 45(2), p. 436-445

    Research output: Contribution to journal › Journal article › Research

  20. Published

    Bacterial natural transformation by highly fragmented and damaged DNA

    Overballe-Petersen, S., Harms, K., Orlando, L. A. A., Moreno Mayar, J. Víctor, Rasmussen, Simon, Dahl, Tais Wittchen, Rosing, Minik Thorleif, Poole, A. M., Sicheritz-Ponten, T., Brunak, S., Inselmann, S., de Vries, J., Wackernagel, W., Pybus, O. G., Nielsen, Rasmus, Johnsen, P. J., Nielsen, K. M. & Willerslev, Eske, 3 Dec 2013, In: Proceedings of the National Academy of Sciences of the United States of America. 110, 49, p. 19860–19865 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Bacterial motility in the sea and its ecological implications

    Grossart, H., Riemann, L. & Azam, F., 2001, In: Aquatic Microbial Ecology. 25, 3, p. 247-258

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Bacterial mitotic machineries

    Gerdes, K., Møller-Jensen, J., Ebersbach, G., Kruse, T., Nordström, K. & Charbon, G. E., 6 Feb 2004, In: Cell. 116, 3, p. 359-66 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Bacterial mitosis: partitioning protein ParA oscillates in spiral-shaped structures and positions plasmids at mid-cell

    Ebersbach, G., Gerdes, K. & Charbon, G. E., 1 Apr 2004, In: Molecular Microbiology. 52, 2, p. 385-98 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Bacterial metabolism in small temperate streams under contemporary and future climates

    Sand-Jensen, K., Pedersen, N. L. & Søndergaard, M., 2007, In: Freshwater Biology. 52, p. 2340-2353

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Bacterial incorporation of tritiated thymidine and populations of bacteriophagous fauna in the rhizosphere of wheat

    Christensen, Henrik, Griffiths, B. & Christensen, Søren, 1992, In: Soil Biology & Biochemistry. 24, 7, p. 703-709

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    Bacterial human virulence genes across diverse habitats as assessed by In silico analysis of environmental metagenomes

    Søborg, D. A., Hendriksen, N. B., Kilian, M., Christensen, Jan H. & Kroer, Niels, 2016, In: Frontiers in Microbiology. 7, 12 p., 1712.

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    Bacterial growth efficiency in lakewater cultures

    Søndergaard, M. & Theil-Nielsen, J., 1997, In: Aquatic Microbial Ecology. vol. 12, p. 115-122

    Research output: Contribution to journal › Journal article › Research

  28. Published

    Bacterial growth control studied by flow cytometry

    Boye, E. & Løbner-Olesen, Anders, 1 Feb 1991, In: Research in Microbiology. 142, 2-3, p. 131-5 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    Bacterial growth and grazing on diatom aggregates: Respiratory carbon turnover as a function of aggregate size and sinking velocity

    Ploug, H. & Grossart, H., 2000, In: Limnology and Oceanography. 45(7), p. 1467-1475

    Research output: Contribution to journal › Journal article › Research

  30. Published

    Bacterial dynamics during decomposition of alder litter

    Kjøller, Annelise Helene, Struwe, Sten & Vestberg, K., 1985, In: Soil Biology and Biochemistry. 17, 4, p. 463-468 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    Bacterial diversity in permanently cold and alkaline ikaite columns from Greenland

    Schmidt, M., Priemé, Anders & Stougaard, P., 2006, In: Extremophiles. 10, 6, p. 551-562 12 p.

    Research output: Contribution to journal › Journal article › Research

  32. Published

    Bacterial diversity and community structure of a sub-surface aquifer exposed to realistic low herbicide concentrations

    Lipthay, J. R. D., Johnsen, K., Albrechtsen, H., Rosenberg, P. & Aamand, J., 2004, In: FEMS Microbiology Ecology. 49, 1, p. 59-69

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    Bacterial community structure in High-Arctic snow and freshwater as revealed by pyrosequencing of 16S rRNA genes and cultivation

    Møller, A. K., Søborg, D. A., Abu Al-Soud, W., Sørensen, Søren Johannes & Kroer, Niels, 2013, In: Polar Research. 32, 11 p., 17390.

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    Bacterial community analysis for investigating bacterial transfer from tonsils to the pig carcass

    Jakobsen, A. M., Bahl, M. I., Buschhardt, T., Hansen, T. B., Abu Al-Soud, W., Brejnrod, A. D., Sørensen, Søren Johannes, Nesbakken, T. & Aabo, S., 2019, In: International Journal of Food Microbiology. 295, p. 8-18 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    Bacterial communities in termite fungus combs are comprised of consistent gut deposits and contributions from the environment

    Otani, S., Hansen, Lars Hestbjerg, Sørensen, Søren Johannes & Poulsen, Michael, 2016, In: Microbial Ecology. 71, 1, p. 207-220 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    Bacterial chromosomes and their replication

    Frimodt-Møller, Jakob, Boesen, Thias Oberg, Charbon, Godefroid & Løbner-Olesen, Anders, 2024, Molecular Medical Microbiology. Tang, Y-W., Hindiyeh, M. Y., Liu, D., Sails, A., Spearman, P. & Zhang, J-R. (eds.). 3 ed. Academic Press, Vol. 1. p. 279-307 29 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  37. Published

    Bacterial chromosomal mobility via lateral transduction exceeds that of classical mobile genetic elements

    Humphrey, S., Fillol-Salom, A., Quiles-Puchalt, N., Ibarra Chavez, Rodrigo, Haag, A. F., Chen, J. & Penadés, J. R., 2021, In: Nature Communications. 12, 13 p., 6509.

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    Bacterial chitinolytic communities respond to chitin and pH alteration in soil

    Kielak, A., Cretoiu, M., Semenov, A., Sørensen, Søren Johannes & van Elsas, J., 2013, In: Applied and Environmental Microbiology. 79, 1, p. 263-272 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    Bacterial carbon cycling in a subarctic fjord: a seasonal study on microbial activity, growth efficiency, and virus-induced mortality in Kobbefjord, Greenland

    Middelboe, Mathias, Glud, R. N. & Sejr, M. K., 2012, In: Limnology and Oceanography. 57, 6, p. 1732-1742 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    Bacterial carbon biomass calculated from biovolumes

    Theil-Nielsen, J. & Søndergaard, M., 1998, In: Archiv fuer Hydrobiologie. Supplement Volumes, Monographic Studies. 141.2, p. 195-207

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    Bacterial bioindicators enable biological status classification along the continental Danube river

    Fontaine, L., Pin, L., Savio, D., Friberg, N., Kirschner, A. K. T., Farnleitner, A. H. & Eiler, A., 2023, In: Communications Biology . 6, 1, 11 p., 862.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    Bacterial and viral dynamics during a mass coral spawning period on the Great Barrier Reef

    Patten, N. L., Mitchell, J. G., Middelboe, Mathias, Eyre, B. D., Seuront, L., Harrison, P. L. & Glud, R. N., 2008, In: Aquatic Microbial Ecology. 50, p. 209-220

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    Bacterial and protozoan dynamics upon thawing and freezing of an active layer permafrost soil

    Schostag, M., Priemé, Anders, Jacquiod, S., Russel, J., Ekelund, Flemming & Jacobsen, C. S., 2019, In: ISME Journal. 13, p. 1345-1359

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    Bacterial Viruses Subcommittee and Archaeal Viruses Subcommittee of the ICTV: update of taxonomy changes in 2021

    Krupovic, M., Turner, D., Morozova, V., Dyall-Smith, M., Oksanen, H. M., Edwards, R., Dutilh, B. E., Lehman, S. M., Reyes, A., Baquero, D. P., Sullivan, M. B., Uchiyama, J., Nakavuma, J., Barylski, J., Young, M. J., Du, S., Alfenas-Zerbini, P., Kushkina, A., Kropinski, A. M., Kurtböke, I. & 29 others, Brister, J. R., Lood, C., Sarkar, B. L., Yigang, T., Liu, Y., Huang, L., Wittmann, J., Chanishvili, N., van Zyl, L. J., Rumnieks, J., Mochizuki, T., Jalasvuori, M., Aziz, R. K., Łobocka, M., Stedman, K. M., Shkoporov, A. N., Gillis, A., Peng, Xu, Enault, F., Knezevic, P., Lavigne, R., Rhee, S. K., Cvirkaite-Krupovic, V., Moraru, C., Moreno Switt, A. I., Poranen, M. M., Millard, A., Prangishvili, D. & Adriaenssens, E. M., 2021, In: Archives of Virology. 166, 11, p. 3239-3244 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    Bacterial Growth on Photochemically Transformed Leachates from Aquatic and Terrestrial Primary Producers

    Anesio, A. M., Nielsen, J. T. & Granéli, W., 2000, In: Microbial Ecology. 40, 3, p. 200-208

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    Bacterial Growth Rate and Marine Virus-Host Dynamics

    Middelboe, Mathias, 2000, In: Microbial Ecology. 40, p. 114-124

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    Bacterial Growth Physiology: With Focus on the tRNA-Linked-Repeats and tRNA Regulation During Starvation

    Kongstad, M., 2016, Department of Biology, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  48. Published

    Bacterial Feeders, the Nematode Caenorhabditis elegans and the Flagellate Cercomonas longicauda, have different Effects on Outcome of Competition among the Pseudomonas Biocontrol Strains CHA0 and DSS73.

    Pedersen, A., Nybroe, O., Winding, A., Ekelund, Flemming & Strandmark, L. B., 2009, In: Microbial Ecology. 57, 3, p. 501-509 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    Bacterial Ecology

    Fenchel, Tom, 2011, Encyclopedia of Life Sciences. Wiley

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  50. Published

    Bacterial Degradation of Pesticides: Construction of Microbial Consortia for Bioremediation

    Knudsen, B. E., 2012, Department of Biology, Faculty of Science, University of Copenhagen. 114 p. (Danmarks og Grønlands geologiske undersøgelse; No. 110, Vol. 2012).

    Research output: Book/Report › Ph.D. thesis › Research

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