Department of Biology

 

 
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  1. Published

    A step-by-step guide to analyzing CAGE data using R/Bioconductor

    Thodberg, Malte & Sandelin, Albin Gustav, 18 Jun 2019, In: F1000Research. 8, 49 p., 886.

    Research output: Contribution to journal › Journal article › Research › peer-review

  2. Published

    CAGEfightR: analysis of 5'-end data using R/Bioconductor

    Thodberg, Malte, Thieffry, A., Vitting-Seerup, K., Andersson, Robin & Sandelin, Albin Gustav, 2019, In: BMC Bioinformatics. 20, 13 p., 487.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Effect of acidification on an Arctic phytoplankton community from Disko Bay, West Greenland

    Thoisen, C., Riisgaard, K., Lundholm, Nina, Nielsen, T. G. & Hansen, Per Juel, 2015, In: Marine Ecology - Progress Series. 520, p. 21-34 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Traditional plant functional groups explain variation in economic but not size-related traits across the tundra biome

    Thomas, H. J. D., Myers-Smith, I. H., Bjorkman, A. D., Elmendorf, S. C., Blok, D., Cornelissen, J. H. C., Forbes, B. C., Hollister, R. D., Normand, S., Prevéy, J. S., Rixen, C., Schaepman-Strub, G., Wilmking, M., Wipf, S., Cornwell, W. K., Kattge, J., Goetz, S. J., Guay, K. C., Alatalo, J. M., Anadon-Rosell, A. & 69 others, Angers-Blondin, S., Berner, L. T., Björk, R. G., Buchwal, A., Buras, A., Carbognani, M., Christie, K., Collier, L. S., Cooper, E. J., Eskelinen, A., Frei, E. R., Grau, O., Grogan, P., Hallinger, M., Heijmans, M. M. P. D., Hermanutz, L., Hudson, J. M. G., Hülber, K., Iturrate-Garcia, M., Iversen, C. M., Jaroszynska, F., Johnstone, J. F., Kaarlejärvi, E., Kulonen, A., Lamarque, L. J., Lévesque, E., Little, C. J., Michelsen, Anders, Milbau, A., Nabe-Nielsen, J., Nielsen, S. S., Ninot, J. M., Oberbauer, S. F., Olofsson, J., Onipchenko, V. G., Petraglia, A., Rumpf, S. B., Semenchuk, P. R., Soudzilovskaia, N. A., Spasojevic, M. J., Speed, J. D. M., Tape, K. D., te Beest, M., Tomaselli, M., Trant, A., Treier, U. A., Venn, S., Vowles, T., Weijers, S., Zamin, T., Atkin, O. K., Bahn, M., Blonder, B., Campetella, G., Cerabolini, B. E. L., Chapin, F. S., Dainese, M., de Vries, F. T., Díaz, S., Green, W., Jackson, R. B., Manning, P., Niinemets, Ü., Ozinga, W. A., Peñuelas, J., Reich, P. B., Schamp, B., Sheremetev, S. & van Bodegom, P. M., 2019, In: Global Ecology and Biogeography. 28, 2, p. 78-95

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Global plant trait relationships extend to the climatic extremes of the tundra biome

    Thomas, H. J. D., Bjorkman, A. D., Myers-Smith, I. H., Elmendorf, S. C., Kattge, J., Diaz, S., Vellend, M., Blok, D., Cornelissen, J. H. C., Forbes, B. C., Henry, G. H. R., Hollister, R. D., Normand, S., Prevéy, J. S., Rixen, C., Schaepman-Strub, G., Wilmking, M., Wipf, S., Cornwell, W. K., Beck, P. S. A. & 85 others, Georges, D., Goetz, S. J., Guay, K. C., Rüger, N., Soudzilovskaia, N. A., Spasojevic, M. J., Alatalo, J. M., Alexander, H. D., Anadon-Rosell, A., Angers-Blondin, S., te Beest, M., Berner, L. T., Björk, R. G., Buchwal, A., Buras, A., Carbognani, M., Christie, K. S., Collier, L. S., Cooper, E. J., Elberling, Bo, Eskelinen, A., Frei, E. R., Grau, O., Grogan, P., Hallinger, M., Heijmans, M. M. P. D., Hermanutz, L., Hudson, J. M. G., Johnstone, J. F., Hülber, K., Iturrate-Garcia, M., Iversen, C. M., Jaroszynska, F., Kaarlejarvi, E., Kulonen, A., Lamarque, L. J., Lantz, T. C., Lévesque, E., Little, C. J., Michelsen, Anders, Milbau, A., Nabe-Nielsen, J., Nielsen, S. S., Ninot, J. M., Oberbauer, S. F., Olofsson, J., Onipchenko, V. G., Petraglia, A., Rumpf, S. B., Shetti, R., Speed, J. D. M., Suding, K. N., Tape, K. D., Tomaselli, M., Trant, A. J., Treier, U. A., Tremblay, M., Venn, S. E., Vowles, T., Weijers, S., Wookey, P. A., Zamin, T. J., Bahn, M., Blonder, B., van Bodegom, P. M., Bond-Lamberty, B., Campetella, G., Cerabolini, B. E. L., Chapin, F. S., Craine, J. M., Dainese, M., Green, W. A., Jansen, S., Kleyer, M., Manning, P., Niinemets, Onoda, Y., Ozinga, W. A., Peñuelas, J., Poschlod, P., Reich, P. B., Sandel, B., Schamp, B. S., Sheremetiev, S. N. & de Vries, F. T., 2020, In: Nature Communications. 11, 1, 12 p., 1351.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Towards an integrated understanding of the consequences of fungus domestication on the fungus-growing termite gut microbiota

    Poulsen, Michael, 2015, In: Environmental Microbiology. 17, 8, p. 2562-2572 11 p.

    Research output: Contribution to journal › Review › Research › peer-review

  7. Published

    The role of symbiont genetic distance and potential adaptability in host preference towards Pseudonocardia symbionts in Acromyrmex leaf-cutting ants

    Poulsen, Michael, Maynard, J., Roland, D. L. & Currie, C. R., 2011, In: Journal of Insect Science. 11, 1, p. 1-12

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Complementary symbiont contributions to plant decomposition in a fungus-farming termite

    Thomas-Poulsen, M., Hu, H., Li, C., Chen, Z., Xu, L., Otani, S., Nygaard, S., Nobre, T., Klaubauf, S., Schindler, P. M., Hauser, F., Pan, H., Yang, Z., Sonnenberg, A. S. M., de Beer, Z. W., Zhang, Y., Wingfield, M. J., Grimmelikhuijzen, C., de Vries, R. P., Korb, J. & 4 others, Aanen, D. K., Wang, J., Boomsma, Jacobus J. & KU, thw266, 2014, In: Proceedings of the National Academy of Sciences of the United States of America. 111, 40, 6 p., 14500-14505.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Integrating coarse-grained molecular dynamics simulations with small-angle X-ray scattering data to characterize multidomain proteins and their assemblies

    Thomasen, Emil, 2024, Department of Biology, Faculty of Science, University of Copenhagen. 205 p.

    Research output: Book/Report › Ph.D. thesis › Research

  10. Published

    Conformational ensembles of intrinsically disordered proteins and flexible multidomain proteins

    Thomasen, Emil & Lindorff-Larsen, Kresten, 2022, In: Biochemical Society Transactions. 50, 1, p. 541-554 14 p.

    Research output: Contribution to journal › Review › Research › peer-review

  11. Published

    Improving Martini 3 for Disordered and Multidomain Proteins

    Thomasen, Emil, Pesce, Francesco, Roesgaard, M. A., Tesei, Giulio & Lindorff-Larsen, Kresten, 2022, In: Journal of Chemical Theory and Computation. 18, 4, p. 2033-2041 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Conformational and oligomeric states of SPOP from small-angle X-ray scattering and molecular dynamics simulations

    Thomasen, Emil, Cuneo, M. J., Mittag, T. & Lindorff-Larsen, Kresten, 2023, In: eLife. 12, 23 p., e84147.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Fremme af spontan vegetation efter gran

    Thomasen, J. M., Kepfer Rojas, Sebastian, Båstrup-Spohr, Lars & Raulund-Rasmussen, Karsten, 22 Apr 2024, 6 p. Institut for Geovidenskab og Naturforvaltning, Københavns Universitet.

    Research output: Other contribution › Net publication - Internet publication › Communication

  14. Published

    Effects of Lifetime Exposures to Environmental Contaminants on the Adult Gut Microbiome

    Thompson, K. N., Oulhote, Y., Weihe, P., Wilkinson, J. E., Ma, S., Zhong, H., Li, J., Kristiansen, Karsten, Huttenhower, C. & Grandjean, P., 2022, In: Environmental Science & Technology. 56, 23, p. 16985-16995 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Identification of BLNK and BTK as mediators of rituximab-induced programmed cell death by CRISPR screens in GCB-subtype diffuse large B-cell lymphoma

    Thomsen, E. A., Rovsing, A. B., Anderson, M. V., Due, H., Huang, J., Luo, Y., Dybkær, K. & Mikkelsen, J. G., 2020, In: Molecular Oncology. 14, 9, p. 1978-1997 20 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Fytoplankton og heterotroft nanoplankton

    Thomsen, H. A., Hansen, Gert, Larsen, Jacob, Moestrup, Øjvind & Vørs, N., 1992, Planktondynamik og stofomsætning i Kattegat. Fenchel, T. (ed.). Miljøstyrelsen, Vol. 10. p. 31-59 29 p. (Havforskning fra Miljøstyrelsen, Vol. 10).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research

  17. Published

    Follow the leader? Orange-fronted conures eavesdrop on conspecific vocal performance and utilise it in social decisions

    Thomsen, Heidi Maria, Balsby, T. J. S. & Dabelsteen, Torben, 2021, In: PLoS ONE. 16, 6, 22 p., e0252374.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Individual variation in the contact calls of the monomorphic Peach-fronted Conure, Aratinga aurea, and its potential role in communication

    Thomsen, Heidi Maria, Balsby, T. J. S. & Dabelsteen, Torben, 2013, In: Bioacoustics - the International Journal of Animal Sound and its Recording. 22, 3, p. 215-227 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    The imitation dilemma: can parrots maintain their vocal individuality when imitating conspecifics?

    Thomsen, Heidi Maria, Balsby, T. J. S. & Dabelsteen, Torben, 2019, In: Behaviour. 156, 5-8, p. 787-814 28 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Flock social behaviour and vocal communication in Eupsittula conures

    Thomsen, Heidi Maria, 2023, Department of Biology, Faculty of Science, University of Copenhagen. 195 p.

    Research output: Book/Report › Ph.D. thesis › Research

  21. Published

    Loricate choanoflagellates from West Greenland (August 1988) including the description of Spinoeca buckii gen. et sp. nov.

    Thomsen, H. A., Østergaard, J. B. & Hansen, L. E., 1995, In: European Journal of Protistology. 31, p. 38-44

    Research output: Contribution to journal › Journal article › Research

  22. Published

    Fine structure and biology of Cryothecomonas gen.nov. (Protista incertae sedis) from the ice biota

    Thomsen, H. A., Buck, K. R., Bolt, P. A. & Garrison, D. L., 1991, In: Can. J. Zool.. 69, p. 1048-1070

    Research output: Contribution to journal › Journal article › Research

  23. Published

    Choanoflagellates of the Central California waters: taxonomy, morphology and species assemblages

    Thomsen, H. A., Buck, K. R. & Chavez, F. P., 1991, In: Marine Biology Research. 33, p. 131-164

    Research output: Contribution to journal › Journal article › Research

  24. Published

    Mikroorganismer i havis

    Thomsen, H. A., 1995, In: Naturens Verden. 10, p. 371-379

    Research output: Contribution to journal › Journal article › Research

  25. Published

    Ericiolus gen. nov. (Prymnesiophyceae), a new coccolithophorid genus from polar and temperate regions

    Thomsen, H. A., Bjørn, P. P., Højlund, L., Olesen, J. & Pedersen, J. B., 1995, In: European Journal of Phycology. 30, p. 29-34

    Research output: Contribution to journal › Journal article › Research

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