Department of Biology

 

 
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  1. Published

    A comprehensive transcriptomic view of renal function in the malaria vector, Anopheles gambiae

    Overend, G., Cabrero, P., Halberg, Kenneth Veland, Ranford-Cartwright, L. C., Woods, D. J., Davies, S. A. & Dow, J. A. T., 2015, In: Insect Biochemistry and Molecular Biology. 67, p. 47-58 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  2. Published

    A computational method for identification of vaccine targets from protein regions of conserved human leukocyte antigen binding

    Olsen, L. R., Simon, C., Kudahl, U. J., Bagger, F. O., Winther, Ole, Reinherz, E. L., Zhang, G. L. & Brusic, V., 2015, In: B M C Medical Genomics. 8, Suppl 4, 6 p., 5.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    A conceptual framework for the identification of candidate drugs and drug targets in acute promyelocytic leukemia

    Marstrand, T. T., Borup, R., Willer, A., Borregaard, N., Sandelin, Albin Gustav, Porse, Bo Torben & Theilgaard-Mønch, Kim, Jul 2010, In: Leukemia. 24, 7, p. 1265-75 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    A conformational switch in the DiGIR1 ribozyme involved in release and folding of the downstream I-DirI mRNA

    Nielsen, Henrik, Einvik, C., Lentz, T. E., Hedegaard, M. M. & Johansen, S. D., 2009, In: RNA: A publication of the RNA Society. 15, 5, p. 958-67 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    A consortium of three-bacteria isolated from human feces inhibits formation of atherosclerotic deposits and lowers lipid levels in a mouse model

    Jie, Z., Zhu, Q., Zou, Y., Wu, Q., Qin, M., He, D., Lin, X., Tong, X., Zhang, J., Jie, Z., Luo, W., Xiao, X., Chen, S., Wu, Y., Guo, G., Zheng, S., Li, Y., Lai, W., Yang, H., Wang, J. & 6 others, Xiao, L., Chen, J., Zhang, T., Kristiansen, Karsten, Jia, H. & Zhong, S., 2023, In: iScience. 26, 6, 22 p., 106960.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    A context-dependent and disordered ubiquitin-binding motif

    Dreier, Jesper Elmsted, Prestel, Andreas, Martins, J. M., Brøndum, S. S., Nielsen, Olaf, Garbers, Anna Engstrøm, Suga, H., Boomsma, Wouter, Rogers, Joseph Matthew, Hartmann-Petersen, Rasmus & Kragelund, Birthe Brandt, 2022, In: Cellular and molecular life sciences : CMLS. 79, 9, 21 p., 484.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    A continuous-flow system for measuring in vitro oxygen and nitrogen metabolism in separated stream communities

    Prahl, C., Jeppesen, E., Sand-Jensen, Kaj & Moth-Iversen, T., 1991, In: Freshwater Biology. 26, 3, p. 495-506

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    A contribution to the foliicolous lichen flora of La Réunion

    Rønhede, S., Johansson, S. & Søchting, Ulrik, 2003, In: Cryptogamie Mycologie. 24, p. 67-71

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    A contribution to the knowledge of the silica-scaled chrysophytes in Mexico

    Kristiansen, J. & Tong, D., 1995, In: Algological Studies. 77, p. 1-6

    Research output: Contribution to journal › Journal article › Research

  10. Published

    A converging subset of soil bacterial taxa is permissive to the IncP-1 plasmid pKJK5 across a range of soil copper contamination

    Song, J., Klümper, U., Riber, Leise, Dechesne, A., Smets, B. F., Sørensen, Søren Johannes & Brandt, Kristian Koefoed, 2020, In: FEMS Microbiology Ecology. 96, 11, 10 p., fiaa200.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    A corazonin G protein-coupled receptor gene in the tick Ixodes scapularis yields two splice variants, each coding for a specific corazonin receptor

    Hauser, Frank, Pallesen, M., Lehnhoff, J., Li, S., Lind, A. & Grimmelikhuijzen, Cornelis (Cok), 2023, In: Biochemical and Biophysical Research Communications. 666, p. 162-169 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    A critical examination of the occurrence of FMRFamide immunoreactivity in the brain of guinea pig and rat

    Triepel, J. & Grimmelikhuijzen, Cornelis (Cok), 1 Jan 1984, In: Histochemistry. 80, 1, p. 63-71 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    A cross-system analysis of labile dissolved organic carbon

    Søndergaard, M. & Middelboe, Mathias, 1995, In: Marine Ecology - Progress Series. 118, p. 283-294

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    A culture-independent method for studying transfer of IncI1 plasmids from wild-type Escherichia coli in complex microbial communities

    Anjum, M., Madsen, Jonas Stenløkke, Espinosa-Gongora, C., Jana, B., Wiese, M., Nielsen, Dennis Sandris, Sørensen, Søren Johannes, Moodley, Arshnee, Bortolaia, V. & Guardabassi, Luca, Sep 2018, In: Journal of Microbiological Methods. 152, p. 18-26 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    A cystophorous cercaria and metacercaria in Antalis entalis (L.) (Mollusca, Scaphopoda) in Norwegian waters, the larval stage of Lecithophyllum botryophorum (Olsson, 1868) (Digenea, Lecithasteridae)

    Køie, M., Karlsbakk, E. & Nylund, A., 2002, In: Marine Biology Research. 87, p. 302-311

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    A cytological study of 28 phanerogams from the mountains of SE Stera Ellas, Greece

    Constantinidis, T., 1997, In: Willdenowia. 27, p. 121-142

    Research output: Contribution to journal › Journal article › Research

  17. Published

    A database of the morphology, ecology and literature of the world's limb‐reduced skinks

    Camaiti, M., Evans, A. R., Hipsley, Christy Anna, Hutchinson, M. N., Meiri, S., Anderson, R. O., Slavenko, A. & Chapple, D. G., 2022, In: Journal of Biogeography. 49, 7, p. 1397-1406 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    A dataset on trophic modes of aquatic protists

    Schneider, L. K., Anestis, K., Mansour, J., Anschütz, A. A., Gypens, N., Hansen, Per Juel, John, U., Klemm, K., Martin, J. L., Medic, Nikola, Not, F. & Stolte, W., 2020, In: Biodiversity Data Journal. 8, 13 p., e56648.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    A de novo designed monomeric, compact three helix bundle protein on a carbohydrate template

    Malik, L., Nygård, Jesper, Christensen, Niels Johan, Madsen, C. S., Rösner, Heike Ilona, Kragelund, Birthe Brandt, Høiberg-Nielsen, R., Streicher, W., Arleth, Lise, Thulstrup, Peter Waaben & Jensen, Knud Jørgen, 2015, In: ChemBioChem. 16, 13, p. 1905-1918 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    A delayed effect of ozone fumigation on photosynthesis of Norway spruce

    Eamus, D., Barnes, J. D., Mortensen, L., Ro-Poulsen, Helge & Davison, A. W., 1989, In: Annals of Forest Science. 46 (suppl.), p. 568-572

    Research output: Contribution to journal › Journal article › Research

  21. Published

    A description of Mallomonas marsupialis nov.sp. (Synurophyceae), a new chrysophyte from Australia, with comments on the endemicity of Australian freshwater algae

    Croome, R., Kristiansen, J. & Tyler, P., 1998, In: Nordic Journal of Botany. 18, p. 633-639

    Research output: Contribution to journal › Journal article › Research

  22. Published

    A detailed description of a Danish strain of Nitzschia sigmoidea, the type species of Nitzschia, providing a reference for future morphological and phylogenetic studies of the genus

    Knattrup, A., Yde, M., Lundholm, Nina & Ellegaard, Marianne, 2007, In: Diatom Research. 22, 1, p. 105-116

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    A di-arginine motif contributes to the ER localization of the type I transmembrane ER oxidoreductase TMX4

    Roth, D., Lynes, E., Riemer, J., Hansen, H. G., Althaus, N., Simmen, T. & Ellgaard, Lars, 2010, In: Biochemical Journal. 425, 1, p. 195-205 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    A dichotomous key to the genera of the Marine Heterotardigrades (Tardigrada)

    Fontoura, P., Bartels, P. J., Jørgensen, Aslak, Kristensen, Reinhardt Møbjerg & Hansen, J. G., 17 Jul 2017, In: Zootaxa. 4294, 1, p. 1-45 45 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    A dimeric Rep protein initiates replication of a linear archaeal virus genome: implications for the Rep mechanism and viral replication

    Oke, M., Kerou, M., Liu, H., Peng, Xu, Garrett, Roger Antony, Prangishvili, D., Naismith, J. H. & White, M. F., 2011, In: Journal of Virology. 85, 2, p. 925-31 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    A disordered acidic domain in GPIHBP1 harboring a sulfated tyrosine regulates lipoprotein lipase

    Kristensen, Kristian Kølby, Midtgaard, S. R., Mysling, S., Kovrov, O., Hansen, L. B., Skar-Gislinge, Nicholas, Beigneux, A. P., Kragelund, Birthe Brandt, Olivecrona, G., Young, S. G., Jørgensen, T. J. D., Fong, L. G. & Ploug, Michael, 2018, In: Proceedings of the National Academy of Sciences of the United States of America. 115, 26, p. E6020-E6029 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    A distinct circular DNA profile intersects with proteome changes in the genotoxic stress-related hSOD1G93A model of ALS

    Gerovska, D., Noer, Julie Boertmann, Qin, Yating, Ain, Q., Januzi, D., Schwab, M., Witte, O. W., Araúzo-Bravo, M. J. & Kretz, A., 2023, In: Cell and Bioscience. 13, 1, 25 p., 170.

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    A distinct role for recombination repair factors in an early cellular response to transcription-replication conflicts

    Shao, Xin, Joergensen, A. M., Howlett, N. G., Lisby, Michael & Østergaard, Vibe Hallundbæk, 2020, In: Nucleic Acids Research. 48, 10, p. 5467-5484 18 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    A distinct role for recombination repair factors in an immediate cellular response to transcription-replication conflicts

    Shao, X., 2018, Department of Biology, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  30. Published

    A divergent calponin homology (NN–CH) domain defines a novel family: implications for evolution of ciliary IFT complex B proteins

    Schou, K. B., Andersen, J. S. & Pedersen, Lotte Bang, 2014, In: Bioinformatics. 30, 7, p. 899-902 4 p.

    Research output: Contribution to journal › Letter › Research › peer-review

  31. Published

    A double-blinded multicenter trial of somatostatin in the treatment of acute pancreatitis

    Gjorup, I., Roikjær, Ole, Andersen, B., Burcharth, F., Hovendal, C., Pedersen, S. A., Christiansen, P., Wara, P., Andersen, Jesper, Balslev, I., Jepsen, J. & Rokkjaer, M., 1 Jan 1992, In: Surgery Gynecology and Obstetrics. 175, 5, p. 397-400 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    A draft genome assembly of spotted hyena, Crocuta crocuta

    Yang, C., Li, F., Xiong, Z., Koepfli, K., Ryder, O., Perelman, P., Li, Q. & KU, thw266, 2020, In: Scientific Data. 7, 10 p., 126.

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    A draft genome of the medicinal plant Cremastra appendiculata (D. Don) provides insights into the colchicine biosynthetic pathway

    Wang, J., Xie, J., Chen, H., Qiu, X., Cui, H., Liu, Y., Sahu, S. K., Fang, D., Li, T., Wang, M., Chen, Y., Liu, Huan, Zhang, J. & Wang, B., 2022, In: Communications Biology . 5, 12 p., 1294.

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    A draft genome sequence of the elusive giant squid, Architeuthis dux

    da Fonseca, R. R., Couto, A., Machado, A. M., Brejova, B., Albertin, C. B., Silva, F., Gardner, P., Baril, T., Hayward, A., Campos, A., Ribeiro, Â. M., Barrio-Hernandez, I., Hoving, H-J., Tafur-Jimenez, R., Chu, C., Frazão, B., Petersen, B., Peñaloza, F., Musacchia, F., Alexander, G. C. & 24 others, Osório, H., Winkelmann, I., Simakov, O., Rasmussen, Simon, Rahman, M. Z., Pisani, D., Vinther, J., Jarvis, E., KU, thw266, Strugnell, J. M., Castro, L. F. C., Fedrigo, O., Patricio, M., Li, Q., Rocha, S., Antunes, A., Wu, Y., Ma, B., Sanges, R., Vinar, T., Blagoev, B., Sicheritz-Pontén, Thomas, Nielsen, Rasmus & Gilbert, M Thomas P, 2020, In: GigaScience. 9, 1, 12 p., giz152.

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    A druggable conformational switch in the c-MYC transactivation domain

    Lama, D., Vosselman, T., Sahin, Cagla, Liaño-pons, J., Cerrato, C. P., Nilsson, L., Teilum, Kaare, Lane, D. P., Landreh, M. & Arsenian Henriksson, M., 2024, In: Nature Communications. 15, 1, 14 p., 1865.

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    A dual-immunocytochemical method to localize c-fos protein in specific neurons based on their content of neuropeptides and connectivity.

    Mikkelsen, J. D., Larsen, Jacob, Sørensen, G. G., Woldbye, David Paul Drucker, Bolwig, T. G., Hastings, M. H. & Ebling, F. J., 1994, In: Histochemistry. 101, 4, p. 245-51 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    A dual-reporter system for investigating and optimizing protein translation and folding in E. coli

    Zutz, A., Hamborg, L., Pedersen, L. E., Kassem, M. M., Papaleo, E., Koza, A., Herrgård, M. J., Ingemann Jensen, S., Teilum, Kaare, Lindorff-Larsen, Kresten & Nielsen, A. T., 2021, In: Nature Communications. 12, 15 p., 6093.

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    A dwarf male reversal in bone-eating worms

    Rouse, G. W., Wilson, N. G., Worsaae, Katrine & Vrijenhoek, R. C., 2015, In: Current Biology. 25, 2, p. 236-241 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    A family of conserved bacterial virulence factors dampens interferon responses by blocking calcium signaling

    Alphonse, N., Wanford, J. J., Voak, A. A., Gay, J., Venkhaya, S., Burroughs, O., Mathew, S., Lee, T., Evans, S. L., Zhao, W., Frowde, K., Alrehaili, A., Dickenson, R. E., Munk, M., Panina, S., Mahmood, I. F., Llorian, M., Stanifer, M. L., Boulant, S., Berchtold, M. W. & 4 others, Bergeron, J. R. C., Wack, A., Lesser, C. F. & Odendall, C., 2022, In: Cell. 185, 13, p. 2354-2369.e17

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    A family of insulin-like growth factor II mRNA-binding proteins represses translation in late development

    Nielsen, J., Christiansen, Jan, Lykke-Andersen, J., Johnsen, A. H., Wewer, Ulla M. & Nielsen, Finn Cilius, 1999, In: Molecular and Cellular Biology. 19, 2, p. 1262-1270 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    A fat-tissue sensor couples growth to oxygen availability by remotely controlling insulin secretion

    Texada, Michael James, Jørgensen, A. F., Christensen, Christian Fokdal, Koyama, Takashi, Malita, Alina, Smith, D. K., Marple, D. F. M., Danielsen, E. T., Petersen, S. K., Hansen, J. L., Halberg, Kenneth Veland & Rewitz, Kim, 2019, In: Nature Communications. 10, p. 1-16 1955.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    A fibroblast-associated antigen: Characterization in fibroblasts and immunoreactivity in smooth muscle differentiated stromal cells

    Rønnov-Jessen, Lone, Celis, J. E., van Deurs, B. & Petersen, Ole William, 1992, In: Journal of Histochemistry and Cytochemistry. 40, 4, p. 475-486

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    A flexible loop controlling the enzymatic activity and specificity in a glycosyl hydrolase family 19 endochitinase from barley seeds

    Fukamizo, T., Miyake, R., Tamura, A., Ohnuma, T., Skriver, Karen, Pursiainen, N. & Juffer, A., 2009, In: Biochimica et Biophysica Acta - Proteins and Proteomics. 1794, 8, p. 1159-1167 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    A flexible multidomain structure drives the function of the urokinase-type plasminogen activator receptor (uPAR)

    Mertens, H. D. T., Kjærgaard, M., Mysling, S., Gårdsvoll, H., Jørgensen, T. J. D., Svergun, D. I. & Ploug, M., 2012, In: Journal of Biological Chemistry. 287, 41, p. 34304-34315 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    A flock of Genomes

    KU, thw266, Jarvis, E. D. & Gilbert, M Thomas P, 2014, In: Science. 346, 6215, p. 1308-1309 2 p.

    Research output: Contribution to journal › Editorial › Research › peer-review

  46. Published

    A flow cytometry-optimized assay using an SOS-green fluorescent protein (SOS-GFP) whole-cell biosensor for the detection of genotoxins in complex environments

    Norman, A., Hansen, Lars Hestbjerg & Sørensen, Søren Johannes, 2006, In: Mutation Research - Reviews. 603, 2, p. 164-172 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    A fluorescent probe which allows highly specific thiol labeling at low pH

    Nielsen, J. W., Jensen, K. S., Hansen, R. R. E., Gotfredsen, C. H. & Winther, Jakob R., 2012, In: Analytical Biochemistry. 421, 1, p. 115-120 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    A fluorescent substrate for carbon-phosphorus lyase: towards the pathway for organophosphonate metabolism in bacteria

    He, S., Lou, Y., Hove-Jensen, B. & Zechel, D. L., 2009, In: Bioorganic & Medicinal Chemistry Letters. 19, 20, p. 5954-5957

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    A framework for integrating biodiversity concerns into national REDD+ programmes

    Gardner, T. A., Burgess, Neil David, Aguilar-Amuchastegui, N., Barlow, J., Berenguer, E., Clements, T., Danielsen, F., Ferreira, J., Foden, W., Kapos, V., Khan, S. M., C. Lees, A., Parry, L., Roman-Cuesta, R. M., Schmitt, C. B., Strange, Niels, Theilade, Ida & Vieira, I. C. G., 2012, In: Biological Conservation. 154, p. 61-71 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    A function for filamentous alpha-smooth muscle actin: Retardation of motility in human breast fibroblasts

    Rønnov-Jessen, Lone & Petersen, Ole William, 1996, In: Journal of Cell Biology. 134, 1, p. 67-80

    Research output: Contribution to journal › Journal article › Research › peer-review

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