Department of Biology

 

 
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  1. 2023
  2. Published

    The role of host pigments in coral photobiology

    Ferreira, G., Bollati, Elena & Kühl, Michael, 2023, In: Frontiers in Marine Science. 10, 14 p., 1204843.

    Research output: Contribution to journal › Review › Research › peer-review

  3. Published

    Too late for regulatory management on Pacific oysters in European coastal waters?

    Hansen, B. W., Dolmer, P. & Vismann, Bent, 2023, In: Journal of Sea Research. 191, 13 p., 102331.

    Research output: Contribution to journal › Review › Research › peer-review

  4. Published

    Towards a standardisation of morphological measurements in the phylum Kinorhyncha

    González-Casarrubios, A., Cepeda, D., Pardos, F., Neuhaus, B., Yamasaki, H., Herranz, Maria, Grzelak, K., Maiorova, A., Adrianov, A., Dal Zotto, M., Di Domenico, M., Landers, S. C. & Sánchez, N., 2023, In: Zoologischer Anzeiger. 302, p. 217-223 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Towards in silico CLIP-seq: predicting protein-RNA interaction via sequence-to-signal learning

    Horlacher, M., Wagner, N., Moyon, L., Kuret, K., Goedert, N., Salvatore, Marco, Ule, J., Gagneur, J., Winther, Ole & Marsico, A., 2023, In: Genome Biology. 24, 1, 37 p., 180.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Towards routine chromosome-scale haplotype-resolved reconstruction in cancer genomics

    Garg, S., 2023, In: Nature Communications. 14, 1, 11 p., 1358.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Transcription factor expression is the main determinant of variability in gene co-activity

    van Duin, Lucas, Krautz, Robert, Rennie, Sarah & Andersson, Robin, 2023, In: Molecular Systems Biology. 19, 7, 17 p., e11392.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Transcriptional and epigenomic profiling identifies YAP signaling as a key regulator of intestinal epithelium maturation

    Pikkupeura, Laura Maarit, Bardini Bressan, Raul, Guiu, J., Chen, Y., Maimets, Martti, Mayer, Daniela, Schweiger, P. J., Hansen, Stine Lind, Maciag, Grzegorz Jerzy, Larsen, Hjalte List, Lõhmussaar, Kadi, Pedersen, M. T., Teves, Joji Marie Yap, Lange, Jette Bornholdt, Benes, V., Sandelin, Albin Gustav & Jensen, Kim Bak, 2023, In: Science Advances. 9, 28, 16 p., eadf9460.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Transfer learning identifies sequence determinants of cell-type specific regulatory element accessibility

    Salvatore, Marco, Horlacher, M., Marsico, A., Winther, Ole & Andersson, Robin, 2023, In: NAR Genomics and Bioinformatics. 5, 2, 10 p., 026.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Transient accumulation and bidirectional movement of KIF13B in primary cilia

    Juhl, A. D., Anvarian, Zeinab, Kuhns, S., Berges, J., Andersen, J. S., Wüstner, D. & Pedersen, Lotte Bang, 2023, In: Journal of Cell Science. 136, 5, 8 p., jcs259257.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Treated like dirt: Robust forensic and ecological inferences from soil eDNA after challenging sample storage

    Frøslev, Tobias Guldberg, Ejrnæs, R., Hansen, Anders Johannes, Bruun, Hans Henrik, Nielsen, Ida Broman, Ekelund, Flemming, Vestergård, M. & Kjøller, Rasmus, 2023, In: Environmental DNA. 5, 1, p. 158-174 17 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Tree species traits and mycorrhizal association shape soil microbial communities via litter quality and species mediated soil properties

    Heděnec, P., Zheng, H., Siqueira, D. P., Lin, Q., Peng, Y., Schmidt, Inger Kappel, Frøslev, Tobias Guldberg, Kjøller, Rasmus, Rousk, J. & Vesterdal, Lars, 2023, In: Forest Ecology and Management. 527, 15 p., 120608.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Two Novel α-Thalassemia Mutations CD 39 -C [Thr > Pro] and CD 109 ACC > CCC [Thr > Pro] Identified in Two Chinese Families: A Case Report

    Zhang, W., Han, X., Deng, J., Zhou, R., Du, X., Wu, C. & Li, M., 2023, In: Hemoglobin. 47, 4, 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Tyrosine kinases compete for growth hormone receptor binding and regulate receptor mobility and degradation

    Chhabra, Y., Seiffert, P., Gormal, R. S., Vullings, M., Lee, C. M. M., Wallis, T. P., Dehkhoda, F., Indrakumar, S., Jacobsen, Nina Louise, Lindorff-Larsen, Kresten, Durisic, N., Waters, M. J., Meunier, F. A., Kragelund, Birthe Brandt & Brooks, A. J., 2023, In: Cell Reports. 42, 5, 26 p., 112490.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Ultrastructure and molecular phylogeny of Phalansterium foulumis sp. nov. (Amoebozoa Variosea)

    Karpov, S. A., Smakova, L. A., Malavin, S. A., Ekelund, Flemming & Smirnov, A. V., 2023, In: Protistology. 17, 3, p. 129-141 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Uncertainty-aware and explainable machine learning for early prediction of battery degradation trajectory

    Rieger, L. H., Flores, E., Nielsen, K. F., Norby, P., Ayerbe, E., Winther, Ole, Vegge, T. & Bhowmik, A., 2023, In: Digital Discovery. 2, 1, p. 112-122 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Uncovering spatiotemporal pattern of floods with Sentinel-1 synthetic aperture radar in major rice-growing river basins of Tanzania

    Sulle Michael, P., G. Sanga, H., J. Shitindi, M., Herzog, Max, L. Meliyo, J. & Massawe, B. H. J., 2023, In: Frontiers in Earth Science. 11, 15 p., 1183834.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Underestimated Interannual Variability of Terrestrial Vegetation Production by Terrestrial Ecosystem Models

    Lin, S., Hu, Z., Wang, Y., Chen, X., He, B., Song, Z., Sun, S., Wu, C., Zheng, Y., Xia, X., Liu, L., Tang, Jing, Sun, Q., Joos, F. & Yuan, W., 2023, In: Global Biogeochemical Cycles. 37, 4, 15 p., e2023GB007696.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Understanding intrinsically disordered proteins: from integrative modelling to design

    Pesce, Francesco, 2023, Department of Biology, Faculty of Science, University of Copenhagen. 156 p.

    Research output: Book/Report › Ph.D. thesis › Research

  20. Published

    Understanding the Role of Individual Residues in Proteins: a Study of Missense Variants and their Impact on Function

    Cagiada, Matteo, 2023, Department of Biology, Faculty of Science, University of Copenhagen. 155 p.

    Research output: Book/Report › Ph.D. thesis › Research

  21. Published

    Understory functional groups and fire history but not experimental warming drive tree seedling performance in unmanaged boreal forests

    Jessen, M. T., Krab, E. J., Lett, Signe, Nilsson, M., Teuber, L., Wardle, D. A. & Dorrepaal, E., 2023, In: Frontiers in Forests and Global Change. 6, 10 p., 1130532.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Unique horizontal gaze control in the box jellyfish, Tripedalia cystophora

    Wiisbye, S. H. & Garm, Anders Lydik, 2023, In: Vision Research. 203, 8 p., 108159.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Unlocking environmental archives in the Arctic—insights from modern diatom-environment relationships in lakes and ponds across Greenland

    Weckström, K., Weckström, J., Wischnewski, J., Davidson, T. A., Lauridsen, T. L., Landkildehus, F., Christoffersen, Kirsten Seestern & Jeppesen, E., 2023, In: Frontiers in Ecology and Evolution. 11, 15 p., 1177638.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Unraveling the genetic basis of neurological diseases and thalassemia: the clinical utility of high throughput sequencing

    ZHANG, W., 2023, Department of Biology, Faculty of Science, University of Copenhagen. 117 p.

    Research output: Book/Report › Ph.D. thesis › Research

  25. Published

    Unravelling animal–microbiota evolution on a chip

    Aizpurua Arrieta, Ostaizka, Blijleven, Kees, Trivedi, Urvish, Gilbert, M Thomas P & Alberdi, Antton, 2023, In: Trends in Microbiology. 31, 10, p. 995-1002 8 p.

    Research output: Contribution to journal › Review › Research › peer-review

  26. Published

    Unravelling the intricate interplay between the membrane, kinases and the intracellular domains of class 1 cytokine receptors

    Seiffert, P., 2023, Department of Biology, Faculty of Science, University of Copenhagen. 248 p.

    Research output: Book/Report › Ph.D. thesis › Research

  27. Published

    Unwrapping NPT Simulations to Calculate Diffusion Coefficients

    Bullerjahn, J. T., von Bülow, Sören, Heidari, M., Hénin, J. & Hummer, G., 2023, In: Journal of Chemical Theory and Computation. 19, 11, p. 3406-3417 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    Urbanization and the gut microbiota: A cross-sectional study in ethnicities living in southwest China

    Han, Mo, 2023, Department of Biology, Faculty of Science, University of Copenhagen. 82 p.

    Research output: Book/Report › Ph.D. thesis › Research

  29. Published

    Use and detection of a vitamin B1 degradation product yields new views of the marine B1 cycle and plankton metabolite exchange

    Paerl, R. W., Curtis, N. P., Bittner, Meriel Jennifer, Cohn, M. R., Gifford, S. M., Bannon, C. C., Rowland, E. & Bertrand, E. M., 2023, In: mBio. 14, 4, 21 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    Use of Probiotics to Control Biofilm Formation in Food Industries

    Tomé, A. R., Carvalho, F. M., Teixeira-Santos, R., Burmølle, Mette, Mergulhão, F. J. M. & Gomes, L. C., 2023, In: Antibiotics. 12, 4, 17 p., 754.

    Research output: Contribution to journal › Review › Research › peer-review

  31. Published

    Using eDNA to find Micrognathozoa

    Giribet, G., Wangensteen, O. S., Garcés-Pastor, S., Møller, Peter Rask & Worsaae, Katrine, 2023, In: Current Biology. 33, 14, p. R756-R757

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    Vandkraft Versus Vandmiljø: Et opløftende eksempel fra De italienske Alper

    Scotti, A., Bottarin, R. & Jacobsen, Dean, 2023, In: Aktuel Naturvidenskab. 4, p. 38-42 5 p.

    Research output: Contribution to journal › Journal article › Communication

  33. Published

    Variation of extrachromosomal circular DNA in cancer cell lines

    dos Santos, Carl Henrik Rung, Hansen, Lasse Bøllehuus, Rojas Triana, Monica, Johansen, A. Z., Perez-Moreno, Mirna & Regenberg, Birgitte, 2023, In: Computational and Structural Biotechnology Journal. 21, p. 4207-4214 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    Variational Open-Domain Question Answering

    Liévin, V., Motzfeldt, A. G., Jensen, I. R. & Winther, Ole, 2023, In: Proceedings of Machine Learning Research. 202, p. 20950-20977 28 p.

    Research output: Contribution to journal › Conference article › Research › peer-review

  35. Published

    Vertical and horizontal gene transfer shaped plant colonization and biomass degradation in the fungal genus Armillaria

    Sahu, N., Indic, B., Wong-Bajracharya, J., Merényi, Z., Ke, H. M., Ahrendt, S., Monk, T. L., Kocsubé, S., Drula, E., Lipzen, A., Bálint, B., Henrissat, B., Andreopoulos, B., Martin, F. M., Bugge Harder, C., Rigling, D., Ford, K. L., Foster, G. D., Pangilinan, J., Papanicolaou, A. & 14 others, Barry, K., LaButti, K., Virágh, M., Koriabine, M., Yan, M., Riley, R., Champramary, S., Plett, K. L., Grigoriev, I. V., Tsai, I. J., Slot, J., Sipos, G., Plett, J. & Nagy, L. G., 2023, In: Nature Microbiology. 8, 27 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    Vitamin B1 Dynamics in Coastal Waters

    Bittner, Meriel Jennifer, 2023, Department of Biology, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  37. Published

    Vocal interactivity in-and-between humans, animals and robots

    Chetouani, M., Briefer, Elodie, Dassow, A., Marxer, R., Moore, R. K., Obin, N. & Stowell, D., 2023, In: Interaction Studies. 24, 1, p. 1-4 4 p.

    Research output: Contribution to journal › Editorial › Research › peer-review

  38. Published

    Volatile organic compound release across a permafrost-affected peatland

    Jiao, Yi, Davie-Martin, Cleo Lisa, Kramshøj, M., Christiansen, C. T., Lee, H., Althuizen, I. H. J. & Rinnan, Riikka, 2023, In: Geoderma. 430, 10 p., 116355.

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    Volatile responses of dwarf birch to mimicked insect herbivory and experimental warming at two elevations in Greenlandic tundra

    Rieksta, Jolanta, Li, T., Davie-Martin, Cleo Lisa, Aeppli, L. C. B., Høye, T. T. & Rinnan, Riikka, 2023, In: Plant-Environment Interactions. 4, 1, 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    WASCO: A Wasserstein-based Statistical Tool to Compare Conformational Ensembles of Intrinsically Disordered Proteins

    González-Delgado, J., Sagar, A., Zanon, C., Lindorff-Larsen, Kresten, Bernadó, P., Neuvial, P. & Cortés, J., 2023, In: Journal of Molecular Biology. 435, 14, 11 p., 168053.

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    Warmer winters result in reshaping of the European beech forest soil microbiome (bacteria, archaea and fungi) - With potential implications for ecosystem functioning

    Dahl, M. B., Kreyling, J., Petters, S., Wang, H., Mortensen, M. S., Maccario, Lorrie, Sørensen, Søren Johannes, Urich, T. & Weigel, R., 2023, In: Environmental Microbiology. 25, 6, 18 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    Warming, permafrost thaw and increased nitrogen availability as drivers for plant composition and growth across the Tibetan Plateau

    Yun, Hanbo, Zhu, Q., Tang, Jing, Zhang, W., Chen, D., Ciais, P., Wu, Q. & Elberling, Bo, 2023, In: Soil Biology and Biochemistry. 182, 9 p., 109041.

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    When gluttony strikes: how high-fat diet impairs hepatic Ca2+ signalling

    Merrild, C. & Johansen, Valdemar Brimnes Ingemann, 2023, In: Journal of Physiology. 601, 12, p. 2245-2247

    Research output: Contribution to journal › Comment/debate › Research › peer-review

  44. Published

    When less is more: shortening the Lpp protein leads to increased vancomycin resistance in Escherichia coli

    Wykes, H., Le, Van Hung Vuong, Olivera, Catrina Diane Peralta & Rakonjac, J., 2023, In: Journal of Antibiotics. 76, p. 746-750 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    Where are we now with European forest multi-taxon biodiversity and where can we head to?

    Burrascano, S., Chianucci, F., Trentanovi, G., Kepfer-Rojas, S., Sitzia, T., Tinya, F., Doerfler, I., Paillet, Y., Nagel, T. A., Mitic, B., Morillas, L., Munzi, S., Van der Sluis, T., Alterio, E., Balducci, L., de Andrade, R. B., Bouget, C., Giordani, P., Lachat, T., Matosevic, D. & 117 others, Napoleone, F., Nascimbene, J., Paniccia, C., Roth, N., Aszalós, R., Brazaitis, G., Cutini, A., D'Andrea, E., De Smedt, P., Heilmann-Clausen, Jacob, Janssen, P., Kozák, D., Mårell, A., Mikoláš, M., Nordén, B., Matula, R., Schall, P., Svoboda, M., Ujhazyova, M., Vandekerkhove, K., Wohlwend, M., Xystrakis, F., Aleffi, M., Ammer, C., Archaux, F., Asbeck, T., Avtzis, D., Ayasse, M., Bagella, S., Balestrieri, R., Barbati, A., Basile, M., Bergamini, A., Bertini, G., Biscaccianti, A. B., Boch, S., Bölöni, J., Bombi, P., Boscardin, Y., Brunialti, G., Bruun, Hans Henrik, Buscot, F., Byriel, David Bille, Campagnaro, T., Campanaro, A., Chauvat, M., Ciach, M., Čiliak, M., Cistrone, L., Pereira, J. M. C., Daniel, R., De Cinti, B., De Filippo, G., Dekoninck, W., Di Salvatore, U., Dumas, Y., Elek, Z., Ferretti, F., Fotakis, D., Frank, T., Frey, J., Giancola, C., Gomoryová, E., Gosselin, M., Gosselin, F., Gossner, M. M., Götmark, F., Haeler, E., Hansen, A. K., Hertzog, L., Hofmeister, J., Hošek, J., Johannsen, VK, Justesen, Mathias Just, Korboulewsky, N., Kovács, B., Lakatos, F., Landivar, C. M., Lens, L., Lingua, E., Lombardi, F., Máliš, F., Marchino, L., Marozas, V., Matteucci, G., Mattioli, W., Møller, P. F., Müller, J., Németh, C., Ónodi, G., Parisi, F., Perot, T., Perret, S., Persiani, A. M., Portaccio, A., Posillico, M., Preikša, Ž., Rahbek, Carsten, Rappa, N. J., Ravera, S., Romano, A., Samu, F., Scheidegger, C., Schmidt, Inger Kappel, Schwegmann, S., Sicuriello, F., Spinu, A. P., Spyroglou, G., Stillhard, J., Topalidou, E., Tøttrup, Anders P., Ujházy, K., Veres, K., Verheyen, K., Weisser, W. W., Zapponi, L. & Ódor, P., 2023, In: Biological Conservation. 284, 13 p., 110176.

    Research output: Contribution to journal › Review › Research › peer-review

  46. Published

    Where is the field of autophagy research heading?

    Abeliovich, H., Debnath, J., Ding, W. X., Jackson, W. T., Kim, D. H., Klionsky, D. J., Ktistakis, N., Margeta, M., Münz, C., Petersen, Morten, Sadoshima, J. & Vergne, I., 2023, In: Autophagy. 19, 4, 6 p.

    Research output: Contribution to journal › Editorial › Research

  47. Published

    Xenobiotic Exposure and Migraine-Associated Signaling: A Multimethod Experimental Study Exploring Cellular Assays in Combination with Ex Vivo and In Vivo Mouse Models

    Rasmussen, Rikke Holm, Christensen, S. L., Callø, Kirstine, Nielsen, B. S., Rehfeld, A., Taylor-Clark, T. E., Haanes, Kristian Agmund, Taboureau, O., Audouze, K., Klærke, Dan Arne, Olesen, Jes & Kristensen, D. M., 2023, In: Environmental Health Perspectives. 131, 11, 14 p., 117003.

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    ZGRF1 Contributes to DNA Repair, Secondary DNA Structure Regulation, and Transcriptional Alteration

    Simonsen, Anne Katrine Wrist, 2023, Department of Biology, Faculty of Science, University of Copenhagen. 153 p.

    Research output: Book/Report › Ph.D. thesis › Research

  49. Published

    cAMP competitively inhibits periplasmic phosphatases to coordinate nutritional growth with competence of Haemophilus influenzae

    Kronborg, Kristina & Zhang, Yong, 2023, In: Journal of Biological Chemistry. 299, 12, 13 p., 105404.

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    pXOOY: A dual-function vector for expression of membrane proteins in Saccharomyces cerevisiae and Xenopus laevis oocytes

    Vold, Victoria Amstrup, Glanville, S., Klærke, Dan Arne & Pedersen, Per Amstrup, 2023, In: PLoS ONE. 18, 2, 16 p., e0281868.

    Research output: Contribution to journal › Journal article › Research › peer-review

  51. Published

    tRNAs Are Stable After All: Pitfalls in Quantification of tRNA from Starved Escherichia coli Cultures Exposed by Validation of RNA Purification Methods

    Prossliner, T., Agrawal, S., Heidemann, Ditte Fogh, Sorensen, M. A. A. & Svenningsen, Sine Lo, 2023, In: mBio. 14, 1, 18 p., e02805-22.

    Research output: Contribution to journal › Journal article › Research › peer-review

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