Department of Biology

 

 
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  1. Published

    Novel roles of the Na+/H+ exchanger NHE1 and the Na+,HCO3 - cotransporter NBCn1 in cell survival, proliferation and motility

    Thorup, G. E., 2014, Department of Biology, Faculty of Science, University of Copenhagen. 146 p.

    Research output: Book/Report › Ph.D. thesis › Research

  2. Published

    Do Neararctic Northern Wheatears (Oenanthe oenanthe leucorhoa) Migrate Nonstop to Africa?

    Thorup, Kasper, Ortvad, T. E. & Rabøl, J., 2006, In: Condor. 108, 2, p. 446-451

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Understanding the migratory orientation program of birds: extending laboratory studies to study free-flying migrants in a natural setting

    Thorup, Kasper, Holland, R. A., Tøttrup, Anders P. & Wikelski, M., 2010, In: Integrative and Comparative Biology. 50, 3, p. 315-322 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Juvenile songbirds compensate for displacement to oceanic islands during autumn migration

    Thorup, Kasper, Ortvad, T. E., Rabøl, J., Holland, R. A., Tøttrup, Anders P. & Wikelski, M., 2011, In: PLoS ONE. 6, 3, 6 p., e17903.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    How do geometric constraints influence migration patterns

    Thorup, Kasper & Rahbek, Carsten, 2004, In: Animal Biodiversity and Conservation. 27, 1, p. 319-329

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Response of an Afro-Palearctic bird migrant to glaciation cycles

    Thorup, Kasper, Pedersen, L., Rodrigues da Fonseca, Rute Andreia, Naimi, B., Nogues, David Bravo, Krapp, M., Manica, A., Willemoes, M., Sjöberg, Sissel, Feng, S., Chen, G., Rey de la Iglesia, Alba, Campos, P. F., Beyer, R., Araújo, M. B., Hansen, Anders Johannes, KU, thw266, Tøttrup, Anders P. & Rahbek, Carsten, 2021, In: Proceedings of the National Academy of Sciences of the United States of America. 118, 52, 8 p., e2023836118.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Vagrancy of Yellow-browed Warbler Phylloscopus inornatus and Pallas' Warbler Ph. proregulus in north-west Europe: Misorientation on great circles?

    Thorup, Kasper, 1998, In: Ringing and Migration. 19, p. 7-12

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Breeding season food limitation drives population decline of the Little Owl Athene noctua in Denmark

    Thorup, Kasper, Sunde, P., Jacobsen, L. B. & Rahbek, Carsten, 2010, In: Ibis. 152, 4, p. 803-814 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Brown Shrike at Gedser, Denmark, in October 1988

    Thorup, Kasper, 2000, In: Dutch Birding. 22, p. 278-282

    Research output: Contribution to journal › Journal article › Research

  10. Published

    The orientation system and migration pattern of long-distance migrants: conflicts between model predictions and observed patterns

    Thorup, Kasper & Rabøl, J., 2001, In: Journal of Avian Biology. 32, p. 111-119

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Can clock-and-compass explain the distribution of ringing recoveries of pied flycatchers?

    Thorup, Kasper, Rabøl, J. & Madsen, Jesper Johannes, 2000, In: Animal Behaviour. 60, p. F3-F8

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Sjældne fugle i Danmark og Grønland i 1999

    Thorup, Kasper & Nielsen, H. H., 2000, In: Dansk Ornitologisk Forenings Tidsskrift. 94, p. 157-170

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Dansk Trækfugleatlas: Dansk ringmærkning i 100 år

    Thorup, Kasper, Madsen, Jesper Johannes & Rahbek, Carsten, 2007, In: Dyr i Natur og Museum. 2007, 1, p. 2-6 5 p.

    Research output: Contribution to journal › Journal article › Communication

  14. Published

    Seasonal survival rates and causes of mortality of Little Owls in Denmark

    Thorup, Kasper, Pedersen, D., Sunde, P., Jacobsen, L. B. & Rahbek, Carsten, Jan 2013, In: Journal of Ornithology. 154, 1, p. 183-190 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Patterns of phenological changes in migratory birds

    Thorup, Kasper, Tøttrup, Anders P. & Rahbek, Carsten, 2007, In: Oecologia. 151, p. 697-703

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Direct toxic effects of microcystion on survival, growth and fecundicity of Daphnia magna

    Thostrup, L. & Christoffersen, Kirsten Seestern, 1999, In: Fundamental and Applied Limnology. 145, p. 447-467 20 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Toxic algae: toxicity of Chrysochromulina with new ultrastructural information on C. polylepis

    Throndsen, J., Larsen, J. & Moestrup, Øjvind, 1995, Algae, Environment and Human Affairs. Bristol, England, p. 201-222

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research

  18. Published

    A novel splice-affecting HNF1A variant with large population impact on diabetes in Greenland

    Thuesen, A. C. B., Stæger, F. F., Kaci, A., Solheim, M. H., Aukrust, I., Jørsboe, E., Santander, C. G., Andersen, M. K., Li, Z., Gilly, A., Stinson, S. E., Gjesing, A. P., Bjerregaard, P., Pedersen, M. L., Larsen, C. V. L., Grarup, N., Jørgensen, M. E., Zeggini, E., Bjørkhaug, L., Njølstad, P. R. & 3 others, Albrechtsen, Anders, Moltke, Ida & Hansen, Torben, 2023, In: The Lancet Regional Health - Europe. 24, 12 p., 100529.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Benchmarking freely available HLA typing algorithms across varying genes, coverages and typing resolutions

    Thuesen, N. H., Klausen, M. S., Gopalakrishnan, Shyam, Trolle, T. & Renaud, Gabriel, 2022, In: Frontiers in Immunology. 13, 15 p., 987655.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Using niche-based modelling to assess the impact of climate change on tree functional diversity in Europe

    Thuiller, W., Lavorel, S., Sykes, M. T. & Bastos Araujo, M., 2006, In: Diversity and Distributions-a Journal of Biological Invasions and Biodiversity. 12, 1, p. 49-60

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    The truncated metabolite GLP-2 (3-33) interacts with the GLP-2 receptor as a partial agonist.

    Thulesen, J., Knudsen, L. B., Hartmann, B., Hastrup, S., Kissow, Hannelouise, Jeppesen, P. B., Ørskov, Cathrine, Holst, Jens Juul & Poulsen, Steen Seier, 2002, In: Regulatory Peptides. 103, 1, p. 9-15 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Induction of cytotoxic CD8+CD56+ T cells from human thymocytes by interleukin-15.

    Thulesen, S., Nissen, Mogens Holst, Ødum, Niels & Röpke, C., 2001, In: Journal of Interferon & Cytokine Research. 21, 11, p. 905-11 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    DeepLoc 2.0: multi-label subcellular localization prediction using protein language models

    Thumuluri, V., Almagro Armenteros, J. J., Johansen, A. R., Nielsen, H. & Winther, Ole, 2022, In: Nucleic Acids Research. 50, W1, p. W228-W234

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Efficient Generative Modelling of Protein Structure Fragments using a Deep Markov Model

    Thygesen, Christian Bahne, Al-Sibahi, A. S., Steenmanns, C. S., Sanz Moreta, Lys, Sørensen, A. B. & Hamelryck, Thomas Wim, 2021, International Conference on Machine Learning, 18-24 July 2021, Virtual. PMLR, p. 10258-10267 (Proceedings of Machine Learning Research, Vol. 139).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  25. Published

    Organization and expression of genes in the genomic region surrounding the glutamine synthetase gene Gln1 from Lotus japonicus

    Thykjaer, T., Danielsen, D., She, Q. & Stougaard, J., 1997, In: Molecular Genetics and Genomics. 255, 6, p. 628-36 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    Mutational analysis of the nucleotide binding site of Escherichia coli dCTP deaminase

    Thymark, M., Johansson, E., Larsen, Sine & Willemoës, Martin, 2007, In: Archives of Biochemistry and Biophysics. 470, 1, p. 20-6 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    Hepatic PGC-1α is not essential for fasting-induced cytochrome p450 regulation in mouse liver

    Thøgersen, R., Maag Kristensen, C., Olsen, M. A., Bertram, H. C., Pilegaard, Henriette & Rasmussen, M. K., 2020, In: Biochemical Pharmacology. 172, 7 p., 113736.

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    Synchronized switching of multiple toxin-antitoxin modules by (p)ppGpp fluctuation

    Tian, C., Semsey, S. & Mitarai, Namiko, 21 Aug 2017, In: Nucleic Acids Research. 45, 14, p. 8180-8189 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    Rapid Curtailing of the Stringent Response by Toxin-Antitoxin Encoded mRNases

    Tian, C., Roghanian, Mohammad, Jørgensen, M. G., Sneppen, Kim, Sørensen, Michael Askvad, Gerdes, K. & Mitarai, Namiko, Jul 2016, In: Journal of Bacteriology. 198, 14, p. 1918-1926

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    What does evolution tell us about the structure of a functional amyloid protein?

    Tian, P., Boomsma, Wouter, Wang, Y., Otzen, D. E., Jensen, Mogens Høgh & Lindorff-Larsen, Kresten, 2015, In: Biophysical Journal. 108, 2, Supplement 1, p. 227a 1 p.

    Research output: Contribution to journal › Conference abstract in journal › Research › peer-review

  31. Published

    Structure of a functional amyloid protein subunit computed using sequence variation

    Tian, P., Boomsma, Wouter, Wang, Y., Otzen, D., Jensen, Mogens Høgh & Lindorff-Larsen, Kresten, 2015, In: Journal of the American Chemical Society. 137, 1, p. 22–25 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    A Monte Carlo study of the early steps of functional amyloid formation

    Tian, P., Lindorff-Larsen, Kresten, Boomsma, Wouter, Jensen, Mogens Høgh & Otzen, D. E., 2016, In: P L o S One. 11, 1, 18 p., e0146096.

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    Robust estimation of diffusion-optimized ensembles for enhanced sampling

    Tian, P., Jónsson, S. Æ., Ferkinghoff-Borg, J., Krivov, S. V. .., Lindorff-Larsen, Kresten, Irbäck, A. & Boomsma, Wouter, 2014, In: Journal of Chemical Theory and Computation. 10, 2, p. 543–553 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    Whole-genome sequence of the planarian Dugesia japonica combining Illumina and PacBio data

    Tian, Q., Guo, Q., Guo, Y., Luo, L., Kristiansen, Karsten, Han, Z., Fang, H. & Zhang, S., 2022, In: Genomics. 114, 2, 10 p., 110293.

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    PyInteraph: a framework for the analysis of interaction networks in structural ensembles of proteins

    Tiberti, M., Invernizzi, G., Lambrughi, M., Inbar, Y., Schreiber, G. & Papaleo, E., 2014, In: Journal of Chemical Information and Modeling. 54, 5, p. 1537-1551 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    ENCORE: Software for Quantitative Ensemble Comparison

    Tiberti, M., Papaleo, E., Bengtsen, T., Boomsma, Wouter & Lindorff-Larsen, Kresten, 2015, In: PLoS Computational Biology. 11, 10, 16 p., e1004415.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    Efficient refolding and reconstitution of tissue factor into nanodiscs facilitates structural investigation of a multicomponent system on a lipid bilayer

    Tidemand, Frederik Grønbæk, Østergaard, H., Ploug, Michael, Kragelund, Birthe Brandt & Arleth, Lise, 2020, In: Biochimica et Biophysica Acta - Biomembranes. 1862, 6, 10 p., 183214.

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    Treatment with the anti-IgE monoclonal antibody omalizumab in women with asthma undergoing fertility treatment: a proof-of-concept study - The PRO-ART study protocol

    Tidemandsen, C., Juul Gade, E., Ulrik, Charlotte Suppli, Nielsen, Henriette Svarre, Oxlund-Mariegaard, B. S., Kristiansen, Karsten, Freiesleben, Nina la Cour, Nøhr, B., Udengaard, H. & Backer, Vibeke, 2020, In: BMJ Open. 10, 11, 7 p., e037041.

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    Interpreting the molecular mechanisms of disease variants in human transmembrane proteins

    Tiemann, Johanna Katarina Sofie, Zschach, Henrike, Lindorff-Larsen, Kresten & Stein, Amelie, 2023, In: Biophysical Journal. 122, 11, 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    Climatic warming increases isoprene emission from a subarctic heath

    Tiiva, P., Faubert, P., Michelsen, Anders, Holopainen, T., Holopainen, J. K. & Rinnan, R., 2008, In: New Phytologist. 180, p. 853-863

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    Contribution of vegetation and water table on isoprene emission from boreal peatland microcosms

    Tiiva, P., Faubert, P., Räty, S., Holopainen, J. K., Holopainen, T. & Rinnan, Riikka, 2009, In: Atmospheric Environment. 43, 34, p. 5469–5475

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    Monoterpene emissions in response to long-term night-time warming, elevated CO2 and extended summer drought in a temperate heath ecosystem

    Tiiva, P., Tang, Jing, Michelsen, Anders & Rinnan, Riikka, 2017, In: Science of the Total Environment. 580, p. 1056-1067 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    More is needed — Thousands of loci are required to elucidate the relationships of the ‘flowers of the sea’ (Sabellida, Annelida)

    Tilic, E., Sayyari, E., Stiller, Josefin, Mirarab, S. & Rouse, G. W., 2020, In: Molecular Phylogenetics and Evolution. 9 p., 106892.

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    The cellular 3D printer of a marine bristle worm—chaetogenesis in Platynereis dumerilii (Audouin & Milne Edwards, 1834) (Annelida)

    Tilic, E., Herkenrath, T., Kirfel, G. & Bartolomaeus, T., 2023, In: Cell and Tissue Research. 391, p. 305-322

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    Phylogenomics resolves ambiguous relationships within Aciculata (Errantia, Annelida)

    Tilic, E., Stiller, Josefin, Campos, E., Pleijel, F. & Rouse, G. W., 2022, In: Molecular Phylogenetics and Evolution. 166, 10 p., 107339.

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    Allelopathic effects of Alexandrium tamarense on other algae: evidence from mixed growth experiments

    Tillmann, U. & Hansen, Per Juel, 2009, In: Aquatic Microbial Ecology. 57, 1, p. 101-112 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    Characterization of Divalent Cation Interactions with AASTY Nanodiscs

    Timcenko, Milena, Autzen, A. A. A. & Autzen, Henriette Elisabeth, 2022, In: ACS Applied Polymer Materials. 4, 2, p. 1071-1083

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    Diffusion-driven instability in a predator-prey system with time-varying diffusitivities

    Timm, U. & Okubo, A., 1992, In: J. Math. Biol.. 30, p. 307-320

    Research output: Contribution to journal › Journal article › Research

  49. Published

    Self- and mutual shading and competition effect on competing algae distributions: Biological implications of the model

    Timm, U., Klinck, J. M. & Okubo, A., 1992, In: Ecol. Modelling. 59, p. 11-36

    Research output: Contribution to journal › Journal article › Research

  50. Published

    Vertical phytoplankton distributions: patterns and analytical solutions

    Timm, U., 1994, In: J.Biol.Syst.. 2 (2), p. 137-163

    Research output: Contribution to journal › Journal article › Research

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