Department of Biology

Organisation profile

 

 
  1. 2021
  2. Published

    Structural and Biophysical Properties of Supercharged and Circularized Nanodiscs

    Johansen, Nicolai Tidemand, Luchini, A., Tidemand, Frederik Grønbæk, Orioli, Simone, Martel, A., Porcar, L., Arleth, Lise & Pedersen, Martin Cramer, 2021, In: Langmuir. 37, 22, p. 6681-6690

    Research output: Contribution to journalJournal articleResearchpeer-review

  3. Published

    Substitutional landscape of a split fluorescent protein fragment using high-density peptide microarrays

    Antonescu, O. N., Rasmussen, A., Damm, N. A. M., Heidemann, Ditte Fogh, Popov, R., Nesterov-Mueller, A., Johansson, Kristoffer Enøe & Winther, Jakob R., 2021, In: PLoS ONE. 16, 2, 17 p., e0241461.

    Research output: Contribution to journalJournal articleResearchpeer-review

  4. Published

    Symbiont-Mediated Digestion of Plant Biomass in Fungus-Farming Insects

    Li, H., Young, S. E., Poulsen, Michael & Currie, C. R., 2021, In: Annual Review of Entomology. 66, p. 297-316 20 p.

    Research output: Contribution to journalReviewResearchpeer-review

  5. E-pub ahead of print

    Synergistic effects of insect herbivory and changing climate on plant volatile emissions in the subarctic tundra

    Rieksta, J., Li, T., Michelsen, Anders & Rinnan, Riikka, 2021, (E-pub ahead of print) In: Global Change Biology.

    Research output: Contribution to journalJournal articleResearchpeer-review

  6. Published

    Systems-wide effects of short-term feed deprivation in obese mice

    Andersen, D., Roager, Henrik Munch, Zhang, L., Moll, J. M., Frandsen, H. L., Danneskiold-Samsøe, N. B., Hansen, Axel Kornerup, Kristiansen, Karsten, Licht, T. R. & Brix, Susanne, 2021, In: Scientific Reports. 11, 11 p., 5716.

    Research output: Contribution to journalJournal articleResearchpeer-review

  7. Published

    Taxonomic Description and Genome Sequence of Christensenella intestinihominis sp. nov., a Novel Cholesterol-Lowering Bacterium Isolated From Human Gut

    ZOU, Yuanqiang, Xue, W., Lin, X., Hu, T., Liu, S., Sun, C., Luo, G., Lv, M., Dai, Y., Kristiansen, Karsten & Xiao, L., 2021, In: Frontiers in Microbiology. 12, 13 p., 632361.

    Research output: Contribution to journalJournal articleResearchpeer-review

  8. Published

    Temporal Variability of Planktonic Ciliates in a Coastal Oligotrophic Environment: Mixotrophy, Size Classes and Vertical Distribution

    Romano, F., Symiakaki, K. & Pitta, P., 2021, In: Frontiers in Marine Science. 8, 14 p., 641589.

    Research output: Contribution to journalJournal articleResearchpeer-review

  9. Published

    Temporal and spatial dynamics of arthropod groups in terrestrial subsurface habitats in central Portugal

    Eusébio, R. P., Enghoff, Henrik, Solodovnikov, Alexey, Michelsen, Anders, Barranco, P., Salgado, J. M., Sendra, A. & Reboleira, Ana Sofia, 2021, In: Zoology. 147, 9 p., 125931.

    Research output: Contribution to journalJournal articleResearchpeer-review

  10. Published

    Temporal oral microbiome changes with brushing in children with cleft lip and palate

    Rodrigues, R., Chung, A. P., Mortensen, M. S., Fernandes, M. H., Monteiro, A. B., Furfuro, R., Silva, C. C., Manso, M. C., Sørensen, Søren Johannes & Morais, P. V., 2021, In: Heliyon. 7, 9 p., e06513.

    Research output: Contribution to journalJournal articleResearchpeer-review

  11. Published

    The Arabidopsis thaliana mRNA decay factor PAT1 functions in osmotic stress responses and decaps ABA-responsive genes

    Zuo, Zhangli, Roux, M. E., Sæmundsson, H. P., Müller, M., Bosch, S. M. & Petersen, Morten, 2021, In: FEBS letters. 595, 2, p. 253-263 11 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  12. Published

    The Allometry of Sound Frequency Bandwidth in Songbirds

    Friis, J. I., Sabino, J., Santos, P., Dabelsteen, Torben & Cardoso, G. C., 2021, In: American Naturalist. 197, 5, p. 607-614 8 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  13. Published

    The Baseline Gut Microbiota Directs Dieting-Induced Weight Loss Trajectories

    Jie, Zhuye, Yu, X., Liu, Y., Sun, L., Chen, P., Ding, Q., Gao, Y., Zhang, X., Yu, M., Liu, Y., Zhang, Yong, Kristiansen, Karsten, Jia, H., Brix, S. & Cai, K., 2021, In: Gastroenterology. 160, 6, p. 2029-2042, e1-e16

    Research output: Contribution to journalJournal articleResearchpeer-review

  14. Published

    The Cubozoan Nervous System: From Neuropeptides to Learning Formation in the Box Jellyfish Tripedalia cystophora

    Nielsen, S. K. D., 2021, Department of Biology, Faculty of Science, University of Copenhagen. 246 p.

    Research output: Book/ReportPh.D. thesisResearch

  15. Published

    The Development of Bacteriophage Resistance in Vibrio alginolyticus Depends on a Complex Metabolic Adaptation Strategy

    Skliros, D., Kalatzis, P. G., Kalloniati, C., Komaitis, F., Papathanasiou, S., Kouri, E. D., Udvardi, M. K., Kokkari, C., Katharios, P. & Flemetakis, E., 2021, In: Viruses. 13, 4, 26 p., 656.

    Research output: Contribution to journalJournal articleResearchpeer-review

  16. Published

    The Interplay between Dysregulated Ion Transport and Mitochondrial Architecture as a Dangerous Liaison in Cancer

    Pedersen, Stine Helene Falsig, Flinck, M. & Pardo, L. A., 2021, In: International Journal of Molecular Sciences. 22, 10, 27 p., 5209.

    Research output: Contribution to journalReviewResearchpeer-review

  17. Published

    The LEAFY floral regulator displays pioneer transcription factor properties

    Lai, X., Blanc-Mathieu, R., GrandVuillemin, L., Huang, Y., Stigliani, Arnaud, Lucas, J., Thévenon, E., Loue-Manifel, J., Turchi, L., Daher, H., Brun-Hernandez, E., Vachon, G., Latrasse, D., Benhamed, M., Dumas, R., Zubieta, C. & Parcy, F., 2021, In: Molecular Plant. 14, 5, p. 829-837 9 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  18. Published

    The Number of Larval Molts Is Controlled by Hox in Caterpillars

    Daimon, T., Koyama, T., Yamamoto, G., Sezutsu, H., Mirth, C. K. & Shinoda, T., 2021, In: Current Biology. 31, 4, p. 884-891.e3 11 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  19. Published

    The Rad51 paralog complex Rad55-Rad57 acts as a molecular chaperone during homologous recombination

    Roy, U., Kwon, Y., Marie, L., Symington, L., Sung, P., Lisby, Michael & Greene, E. C., 2021, In: Molecular Cell. 81, 5, p. 1043-1057.e8 23 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  20. Published

    The RelA hydrolase domain acts as a molecular switch for (p)ppGpp synthesis

    Sinha, A. K. & Winther, K. S., 2021, In: Communications Biology . 4, 10 p., 434.

    Research output: Contribution to journalJournal articleResearchpeer-review

  21. Published

    The Scent of Ant Brood: Caste Differences in Surface Hydrocarbons of Formica exsecta Pupae

    Pulliainen, U., Bos, Nicky Peter Maria, d'Ettorre, P. & Sundström, L., 2021, In: Journal of Chemical Ecology. 47, 6, p. 513-524 12 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  22. Published

    The complexity of wood ash fertilization disentangled: Effects on soil pH, nutrient status, plant growth and cadmium accumulation

    Johansen, Jesper Liengaard, Nielsen, M. L., Vestergård, M., Mortensen, Louise Hindborg, Cruz-Paredes, C., Rønn, Regin, Kjøller, Rasmus, Hovmand, Mads Frederik, Christensen, S. & Ekelund, Flemming, 2021, In: Environmental and Experimental Botany. 185, 9 p., 104424.

    Research output: Contribution to journalJournal articleResearchpeer-review

  23. Published

    The effect of smartphone-based monitoring and treatment on the rate and duration of psychiatric readmission in patients with unipolar depressive disorder: The RADMIS randomized controlled trial

    Tønning, Morten Lindbjerg, Faurholt-Jepsen, M., Frost, M., Martiny, Klaus, Tuxen, N., Rosenberg, N., Busk, J., Winther, Ole, Melbye, S. A., Thaysen-Petersen, D., Aamund, K. A., Tolderlundh, L., Bardram, J. E. & Kessing, Lars Vedel, 2021, In: Journal of Affective Disorders. 282, p. 354-363 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  24. Published

    The evolution of ancestral and species-specific adaptations in snowfinches at the Qinghai–Tibet Plateau

    Qu, Y., Chen, C., Chen, X., Hao, Y., She, H., Wang, M., Ericson, P. G. P., Lin, H., Cai, T., Song, G., Jia, C., Chen, C., Zhang, H., Li, J., Liang, L., Wu, T., Zhao, J., Gao, Q., Zhang, Guojie, Zhai, W., Zhang, C., Zhang, Y. E. & Lei, F., 2021, In: PNAS. 118, 13, 10 p., e2012398118.

    Research output: Contribution to journalJournal articleResearchpeer-review

  25. Published

    The genetic history of Greenlandic-European contact

    Waples, R. K., Hauptmann, A. L., Seiding, I. H., Jørsboe, Emil, Jørgensen, M. E., Grarup, Niels, Andersen, M. K., Larsen, C. V. L., Bjerregaard, P., Hellenthal, G., Hansen, Torben, Albrechtsen, Anders & Moltke, Ida, 2021, In: Current Biology. 31, 10, p. 2214-2219.e4

    Research output: Contribution to journalJournal articleResearchpeer-review

  26. Published

    The genome of Magnolia biondii Pamp. provides insights into the evolution of Magnoliales and biosynthesis of terpenoids

    Dong, S., Liu, M., Liu, Y., Chen, F., Yang, T., Chen, L., Zhang, X., Guo, X., Fang, D., Li, L., Deng, T., Yao, Z., Lang, X., Gong, Y., Wu, E., Wang, Y., Shen, Y., Gong, X., Liu, Huan & Zhang, S., 2021, In: Horticulture Research. 8, 13 p., 38.

    Research output: Contribution to journalJournal articleResearchpeer-review

  27. Published

    The germline mutational process in rhesus macaque and its implications for phylogenetic dating

    Bergeron, L. A., Besenbacher, S., Bakker, J., Zheng, J., Li, P., Pacheco, G., Sinding, Mikkel Holger Strander, Kamilari, M., Gilbert, M Thomas P, Schierup, M. H. & Zhang, Guojie, 2021, In: GigaScience. 10, 5, 14 p., giab029.

    Research output: Contribution to journalJournal articleResearchpeer-review

  28. Published

    The infant gut resistome associates with E. coli, environmental exposures, gut microbiome maturity, and asthma-associated bacterial composition

    Li, Xuan Ji, Stokholm, Jakob, Brejnrod, A., Vestergaard, G. A., Russel, Jakob, Trivedi, Urvish, Thorsen, J., Gupta, S., Hjelmsø, M. H., Shah, S. A., Rasmussen, Morten Arendt, Bisgaard, Hans & Sørensen, Søren Johannes, 2021, In: Cell Host & Microbe. 29, 6, p. 975-987.e4 17 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  29. Published

    The initial inoculation ratio regulates bacterial coculture interactions and metabolic capacity

    Gao, C., Cao, H., Cai, P. & Sørensen, Søren Johannes, 2021, In: ISME Journal. 15, p. 29-40 12 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  30. Published

    The lichen genus Villophora (Teloschistaceae, Ascomycota)

    Søchting, Ulrik, Søgaard, M. Z., Sancho, L. G. & Arup, U., 2021, In: Lichenologist. 53, 3, p. 245-255 11 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  31. Published

    The loss of mixotrophy in Alexandrium pseudogonyaulax: Implications for trade-offs between toxicity, mucus trap production, and phagotrophy

    Blossom, H. E. & Hansen, Per Juel, 2021, In: Limnology and Oceanography. 66, 2, p. 528-542 15 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  32. Published

    The missing pieces for better future predictions in subarctic ecosystems: A Torneträsk case study

    Pascual, D., Åkerman, J., Becher, M., Callaghan, T. V., Christensen, T. R., Dorrepaal, E., Emanuelsson, U., Giesler, R., Hammarlund, D., Hanna, E., Hofgaard, A., Jin, H., Johansson, C., Jonasson, C., Klaminder, J., Karlsson, J., Lundin, E., Michelsen, Anders, Olefeldt, D., Persson, A., Phoenix, G. K., Rączkowska, Z., Rinnan, Riikka, Ström, L., Tang, Jing, Varner, R. K., Wookey, P. & Johansson, M., 2021, In: Ambio. 50, 2, p. 375–392

    Research output: Contribution to journalJournal articleResearchpeer-review

  33. Published

    The role of a traditional and western diet on glucose homeostasis in Greenlandic Inuit carriers and non-carriers of type 2 diabetes variant in the TBC1D4 gene: A protocol for a randomized clinical trial

    Møller, Grith, Lind, Mads Vendelbo, Hauptmann, A. L., Senftleber, N., Hansen, C. B., Hansen, Torben, Jørgensen, M. E. & Lauritzen, Lotte, 2021, In: Contemporary Clinical Trials Communications. 21, 6 p., 100734.

    Research output: Contribution to journalJournal articleResearchpeer-review

  34. Published

    The role of sirtuin 1 on the induction of trained immunity

    Mourits, V. P., Helder, L. S., Matzaraki, V., Koeken, V. A. C. M., Groh, L., de Bree, L. C. J., Moorlag, S. J. C. F. M., van der Heijden, C. D. C. C., Keating, Sam, van Puffelen, J. H., Jaeger, M., Joosten, L. A. B. & Netea, M. G., 2021, In: Cellular Immunology. 366, 8 p., 104393.

    Research output: Contribution to journalJournal articleResearchpeer-review

  35. Published

    The type specimens in Eugen von Halácsy's Herbarium Graecum

    Reich, D., Gutermann, W., Bardy, K., Rainer, H., Raus, T., Sonnleitner, M., Tan, K. & Lachmayer, M., 2021, In: Phytotaxa. 493, 1, p. 1-156 156 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  36. Published

    Three Ribosomal Operons of Escherichia coli Contain Genes Encoding Small RNAs That Interact With Hfq and CsrA in vitro

    Stenum, T. S., Kongstad, M., Holmqvist, E., Kallipolitis, B., Svenningsen, Sine Lo & Sørensen, Michael Askvad, 2021, In: Frontiers in Microbiology. 12, 18 p., 625585.

    Research output: Contribution to journalJournal articleResearchpeer-review

  37. Published

    Tillage shapes the soil and rhizosphere microbiome of barley - but not its susceptibility towards Blumeria graminis f. sp. hordei

    Bziuk, N., Maccario, Lorrie, Douchkov, D., Lueck, S., Babin, D., Sørensen, Søren Johannes, Schikora, A. & Smalla, K., 2021, In: FEMS Microbiology Ecology. 97, 3, 14 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  38. Published

    Time-course single-cell RNA sequencing reveals transcriptional dynamics and heterogeneity of limbal stem cells derived from human pluripotent stem cells

    Sun, C., Wang, H., Ma, Q., Chen, C., YUE, Jianhui, Li, B. & Zhang, X., 2021, In: Cell and Bioscience. 11, 12 p., 24.

    Research output: Contribution to journalJournal articleResearchpeer-review

  39. Published

    Towards complete and error-free genome assemblies of all vertebrate species

    Rhie, A., McCarthy, S. A., Fedrigo, O., Damas, J., Formenti, G., Koren, S., Uliano-Silva, M., Chow, W., Fungtammasan, A., Kim, J., Lee, C., Ko, B. J., Chaisson, M., Gedman, G. L., Cantin, L. J., Thibaud-Nissen, F., Haggerty, L., Bista, I., Smith, M., Haase, B., Mountcastle, J., Winkler, S., Paez, S., Howard, J., Vernes, S. C., Lama, T. M., Grutzner, F., Warren, W. C., Balakrishnan, C. N., Burt, D., George, J. M., Biegler, M. T., Iorns, D., Digby, A., Eason, D., Robertson, B., Edwards, T., Wilkinson, M., Turner, G., Meyer, A., Kautt, A. F., Franchini, P., Detrich, H. W., Svardal, H., Wagner, M., Naylor, G. J. P., Pippel, M., Malinsky, M., Mooney, M., Simbirsky, M., Hannigan, B. T., Pesout, T., Houck, M., Misuraca, A., Kingan, S. B., Hall, R., Kronenberg, Z., Sović, I., Dunn, C., Ning, Z., Hastie, A., Lee, J., Selvaraj, S., Green, R. E., Putnam, N. H., Gut, I., Ghurye, J., Garrison, E., Sims, Y., Collins, J., Pelan, S., Torrance, J., Tracey, A., Wood, J., Dagnew, R. E., Guan, D., London, S. E., Clayton, D. F., Mello, C. V., Friedrich, S. R., Lovell, P. V., Osipova, E., Al-Ajli, F. O., Secomandi, S., Kim, H., Theofanopoulou, C., Hiller, M., Zhou, Y., Harris, R. S., Makova, K. D., Medvedev, P., Hoffman, J., Masterson, P., Clark, K., Martin, F., Howe, K., Flicek, P., Walenz, B. P., Kwak, W., Clawson, H., Diekhans, M., Nassar, L., Paten, B., Kraus, R. H. S., Crawford, A. J., Gilbert, M Thomas P, Zhang, Guojie, Venkatesh, B., Murphy, R. W., Koepfli, K., Shapiro, B., Johnson, W. E., Di Palma, F., Marques-Bonet, T., Teeling, E. C., Warnow, T., Graves, J. M., Ryder, O. A., Haussler, D., O’Brien, S. J., Korlach, J., Lewin, H. A., Howe, K., Myers, E. W., Durbin, R., Phillippy, A. M. & Jarvis, E. D., 2021, In: Nature. 592, 7856, p. 737-746 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  40. Published

    Tracing the genetic footprints of vertebrate landing in non-teleost ray-finned fishes

    Bi, X., Wang, K., Yang, L., Pan, H., Jiang, H., Wei, Q., Fang, M., Yu, H., Zhu, C., Cai, Y., He, Y., Gan, X., Zeng, H., Yu, D., Zhu, Y., Jiang, H., Qiu, Q., Yang, H., Zhang, Y. E., Wang, W., Zhu, M., He, S. & Zhang, Guojie, 2021, In: Cell. 184, 5, p. 1377-1391, e1-e14

    Research output: Contribution to journalJournal articleResearchpeer-review

  41. Published

    TrancriptomeReconstructoR: data-driven annotation of complex transcriptomes

    Ivanov, Maxim, Sandelin, Albin Gustav & Marquardt, Sebastian, 2021, In: BMC Bioinformatics. 22, 15 p., 290.

    Research output: Contribution to journalJournal articleResearchpeer-review

  42. Published

    Transcription initiation of distant core promoters in a large-sized genome of an insect

    Liu, Qing, Jiang, F., Zhang, J., Li, X. & Kang, L., 2021, In: BMC Biology. 19, 21 p., 62.

    Research output: Contribution to journalJournal articleResearchpeer-review

  43. Published

    Two Brassica napus cultivars differ in gene expression, but not in their response to submergence

    Wittig, P. R., Ambros, S., Müller, J. T., Bammer, B., Álvarez-Cansino, L., Konnerup, D., Pedersen, Ole & Mustroph, A., 2021, In: Physiologia Plantarum. 171, 3, p. 400-415

    Research output: Contribution to journalJournal articleResearchpeer-review

  44. Published

    Using UCEs to track the influence of sea‐level change on leafy seadragon populations

    Stiller, Josefin, Rodrigues da Fonseca, Rute Andreia, Alfaro, M. E., Faircloth, B. C., Wilson, N. G. & Rouse, G. W., 2021, In: Molecular Ecology. p. 1364-1380

    Research output: Contribution to journalJournal articleResearchpeer-review

  45. Published

    Using the 2020 global pandemic as a springboard to highlight the need for amphibian conservation in eastern Asia

    Borzée, A., Kielgast, Jos, Wren, S., Angulo, A., Chen, S., Magellan, K., Messenger, K. R., Hansen-Hendrikx, C. M., Baker, A., Santos, M. M. D., Kusrini, M., Jiang, J., Maslova, I. V., Das, I., Park, D., Bickford, D., Murphy, R. W., Che, J., Van Do, T., Nguyen, T. Q., Chuang, M. & Bishop, P. J., 2021, In: Biological Conservation. 255, 10 p., 108973.

    Research output: Contribution to journalReviewResearchpeer-review

  46. Published

    Variance in within-pair reproductive success influences the opportunity for selection annually and over the lifetimes of males in a multibrooded songbird

    Germain, Ryan Ross, Hallworth, M. T., Kaiser, S. A., Sillett, T. S. & Webster, M. S., 2021, In: Evolution. 75, 4, p. 915-930 16 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  47. Published

    Variation in predicted COVID-19 risk among lemurs and lorises

    Melin, A. D., Orkin, J. D., Janiak, M. C., Valenzuela, A., Kuderna, L., Marrone, F., Ramangason, H., Horvath, J. E., Roos, C., Kitchener, A. C., Khor, C. C., Lim, W. K., Lee, J. G. H., Tan, P., Umapathy, G., Raveendran, M., Alan Harris, R., Gut, I., Gut, M., Lizano, E., Nadler, T., Zinner, D., Le, M. D., Manu, S., Rabarivola, C. J., Zaramody, A., Andriaholinirina, N., Johnson, S. E., Jarvis, E. D., Fedrigo, O., Wu, D., Zhang, Guojie, Farh, K. K., Rogers, J., Marques-Bonet, T., Navarro, A., Juan, D., Arora, P. S. & Higham, J. P., 2021, In: American Journal of Primatology. 83, 6, 12 p., e23255.

    Research output: Contribution to journalJournal articleResearchpeer-review

  48. Published

    Vertical distribution of prokaryotes communities and predicted metabolic pathways in New Zealand wetlands, and potential for environmental DNA indicators of wetland condition

    Wood, J. R., Burge, O. R., Bolstridge, N., Bonner, K., Clarkson, B., Cole, Theresa Louise, Davis, C., Fergus, A., King, P., McKeown, M. M., Morse, C., Richardson, S. J., Robertson, H. & Wilmshurst, J. M., 2021, In: PLoS ONE. 16, 1, e0243363.

    Research output: Contribution to journalJournal articleResearchpeer-review

  49. Published

    Vicariance followed by secondary gene flow in a young gazelle species complex

    Erill, Genis Garcia, Kjær, M. M., Albrechtsen, Anders, Siegismund, Hans Redlef & Heller, Rasmus, 2021, In: Molecular Ecology. 30, 2, p. 528-544

    Research output: Contribution to journalJournal articleResearchpeer-review

  50. Published

    Vilde bier, du kan møde i insekthotellet

    Madsen, Henning Bang & Dupont, Y. L., 2021, In: Haven. 4, p. 80-83

    Research output: Contribution to journalJournal articleCommunication

  51. Published

    Vocalisations in farm animals: A step towards positive welfare assessment

    Laurijs, K. A., Briefer, Elodie, Reimert, I. & Webb, L. E., 2021, In: Applied Animal Behaviour Science. 236, 13 p., 105264.

    Research output: Contribution to journalReviewResearchpeer-review

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