Chromosome-scale genomes of commercial timber trees (Ochroma pyramidale, Mesua ferrea, and Tectona grandis)
Research output: Contribution to journal › Journal article › Research › peer-review
Standard
Chromosome-scale genomes of commercial timber trees (Ochroma pyramidale, Mesua ferrea, and Tectona grandis). / Sahu, Sunil Kumar; Liu, Min; Chen, Yewen; Gui, Jinshan; Fang, Dongming; Chen, Xiaoli; Yang, Ting; He, Chengzhong; Cheng, Le; Yang, Jinlong; Sahu, Durgesh Nandini; Li, Linzhou; Wang, Hongli; Mu, Weixue; Wei, Jinpu; Liu, Jie; Zhao, Yuxian; Zhang, Shouzhou; Lisby, Michael; Liu, Xin; Xu, Xun; Li, Laigeng; Wang, Sibo; Liu, Huan.
In: Scientific Data, Vol. 10, No. 1, 512, 2023.Research output: Contribution to journal › Journal article › Research › peer-review
Harvard
APA
Vancouver
Author
Bibtex
}
RIS
TY - JOUR
T1 - Chromosome-scale genomes of commercial timber trees (Ochroma pyramidale, Mesua ferrea, and Tectona grandis)
AU - Sahu, Sunil Kumar
AU - Liu, Min
AU - Chen, Yewen
AU - Gui, Jinshan
AU - Fang, Dongming
AU - Chen, Xiaoli
AU - Yang, Ting
AU - He, Chengzhong
AU - Cheng, Le
AU - Yang, Jinlong
AU - Sahu, Durgesh Nandini
AU - Li, Linzhou
AU - Wang, Hongli
AU - Mu, Weixue
AU - Wei, Jinpu
AU - Liu, Jie
AU - Zhao, Yuxian
AU - Zhang, Shouzhou
AU - Lisby, Michael
AU - Liu, Xin
AU - Xu, Xun
AU - Li, Laigeng
AU - Wang, Sibo
AU - Liu, Huan
N1 - Publisher Copyright: © 2023, Springer Nature Limited.
PY - 2023
Y1 - 2023
N2 - Wood is the most important natural and endlessly renewable source of energy. Despite the ecological and economic importance of wood, many aspects of its formation have not yet been investigated. We performed chromosome-scale genome assemblies of three timber trees (Ochroma pyramidale, Mesua ferrea, and Tectona grandis) which exhibit different wood properties such as wood density, hardness, growth rate, and fiber cell wall thickness. The combination of 10X, stLFR, Hi-Fi sequencing and HiC data led us to assemble high-quality genomes evident by scaffold N50 length of 55.97 Mb (O. pyramidale), 22.37 Mb (M. ferrea) and 14.55 Mb (T. grandis) with >97% BUSCO completeness of the assemblies. A total of 35774, 24027, and 44813 protein-coding genes were identified in M. ferrea, T. grandis and O. pyramidale, respectively. The data generated in this study is anticipated to serve as a valuable genetic resource and will promote comparative genomic analyses, and it is of practical importance in gaining a further understanding of the wood properties in non-model woody species.
AB - Wood is the most important natural and endlessly renewable source of energy. Despite the ecological and economic importance of wood, many aspects of its formation have not yet been investigated. We performed chromosome-scale genome assemblies of three timber trees (Ochroma pyramidale, Mesua ferrea, and Tectona grandis) which exhibit different wood properties such as wood density, hardness, growth rate, and fiber cell wall thickness. The combination of 10X, stLFR, Hi-Fi sequencing and HiC data led us to assemble high-quality genomes evident by scaffold N50 length of 55.97 Mb (O. pyramidale), 22.37 Mb (M. ferrea) and 14.55 Mb (T. grandis) with >97% BUSCO completeness of the assemblies. A total of 35774, 24027, and 44813 protein-coding genes were identified in M. ferrea, T. grandis and O. pyramidale, respectively. The data generated in this study is anticipated to serve as a valuable genetic resource and will promote comparative genomic analyses, and it is of practical importance in gaining a further understanding of the wood properties in non-model woody species.
U2 - 10.1038/s41597-023-02420-8
DO - 10.1038/s41597-023-02420-8
M3 - Journal article
C2 - 37537171
AN - SCOPUS:85166572637
VL - 10
JO - Scientific data
JF - Scientific data
SN - 2052-4463
IS - 1
M1 - 512
ER -
ID: 362745389