Genome sequence of foxtail millet (Setaria italica) provides insights into grass evolution and biofuel potential

Research output: Contribution to journal › Journal article › Research › peer-review

Standard

Genome sequence of foxtail millet (Setaria italica) provides insights into grass evolution and biofuel potential. / Zhang, Gengyun; Liu, Xin; Quan, Zhiwu; Cheng, Shifeng; Xu, Xun; Pan, Shengkai; Xie, Min; Zeng, Peng; Yue, Zhen; Wang, Wenliang; Tao, Ye; Bian, Chao; Han, Changlei; Xia, Qiuju; Peng, Xiaohua; Cao, Rui; Yang, Xinhua; Zhan, Dongliang; Hu, Jingchu; Zhang, Yinxin; Li, Henan; Li, Hua; Li, Ning; Wang, Junyi; Wang, Chanchan; Wang, Renyi; Guo, Tao; Cai, Yanjie; Liu, Chengzhang; Xiang, Haitao; Shi, Qiuxiang; Huang, Ping; Chen, Qingchun; Li, Yingrui; Wang, Jun; Zhao, Zhihai; Wang, Jian.

In: Nature Biotechnology, Vol. 30, No. 6, 2012, p. 549-554.

Research output: Contribution to journal › Journal article › Research › peer-review

Harvard

Zhang, G, Liu, X, Quan, Z, Cheng, S, Xu, X, Pan, S, Xie, M, Zeng, P, Yue, Z, Wang, W, Tao, Y, Bian, C, Han, C, Xia, Q, Peng, X, Cao, R, Yang, X, Zhan, D, Hu, J, Zhang, Y, Li, H, Li, H, Li, N, Wang, J, Wang, C, Wang, R, Guo, T, Cai, Y, Liu, C, Xiang, H, Shi, Q, Huang, P, Chen, Q, Li, Y, Wang, J, Zhao, Z & Wang, J 2012, 'Genome sequence of foxtail millet (Setaria italica) provides insights into grass evolution and biofuel potential', Nature Biotechnology, vol. 30, no. 6, pp. 549-554. https://doi.org/10.1038/nbt.2195

APA

Zhang, G., Liu, X., Quan, Z., Cheng, S., Xu, X., Pan, S., Xie, M., Zeng, P., Yue, Z., Wang, W., Tao, Y., Bian, C., Han, C., Xia, Q., Peng, X., Cao, R., Yang, X., Zhan, D., Hu, J., ... Wang, J. (2012). Genome sequence of foxtail millet (Setaria italica) provides insights into grass evolution and biofuel potential. Nature Biotechnology, 30(6), 549-554. https://doi.org/10.1038/nbt.2195

Vancouver

Zhang G, Liu X, Quan Z, Cheng S, Xu X, Pan S et al. Genome sequence of foxtail millet (Setaria italica) provides insights into grass evolution and biofuel potential. Nature Biotechnology. 2012;30(6):549-554. https://doi.org/10.1038/nbt.2195

Author

Zhang, Gengyun ; Liu, Xin ; Quan, Zhiwu ; Cheng, Shifeng ; Xu, Xun ; Pan, Shengkai ; Xie, Min ; Zeng, Peng ; Yue, Zhen ; Wang, Wenliang ; Tao, Ye ; Bian, Chao ; Han, Changlei ; Xia, Qiuju ; Peng, Xiaohua ; Cao, Rui ; Yang, Xinhua ; Zhan, Dongliang ; Hu, Jingchu ; Zhang, Yinxin ; Li, Henan ; Li, Hua ; Li, Ning ; Wang, Junyi ; Wang, Chanchan ; Wang, Renyi ; Guo, Tao ; Cai, Yanjie ; Liu, Chengzhang ; Xiang, Haitao ; Shi, Qiuxiang ; Huang, Ping ; Chen, Qingchun ; Li, Yingrui ; Wang, Jun ; Zhao, Zhihai ; Wang, Jian. / Genome sequence of foxtail millet (Setaria italica) provides insights into grass evolution and biofuel potential. In: Nature Biotechnology. 2012 ; Vol. 30, No. 6. pp. 549-554.

Bibtex

@article{c407e9d4ec924a5587db9f8b1084c3ac,
title = "Genome sequence of foxtail millet (Setaria italica) provides insights into grass evolution and biofuel potential",
abstract = "Foxtail millet (Setaria italica), a member of the Poaceae grass family, is an important food and fodder crop in arid regions and has potential for use as a C(4) biofuel. It is a model system for other biofuel grasses, including switchgrass and pearl millet. We produced a draft genome (∼423 Mb) anchored onto nine chromosomes and annotated 38,801 genes. Key chromosome reshuffling events were detected through collinearity identification between foxtail millet, rice and sorghum including two reshuffling events fusing rice chromosomes 7 and 9, 3 and 10 to foxtail millet chromosomes 2 and 9, respectively, that occurred after the divergence of foxtail millet and rice, and a single reshuffling event fusing rice chromosome 5 and 12 to foxtail millet chromosome 3 that occurred after the divergence of millet and sorghum. Rearrangements in the C(4) photosynthesis pathway were also identified.",
author = "Gengyun Zhang and Xin Liu and Zhiwu Quan and Shifeng Cheng and Xun Xu and Shengkai Pan and Min Xie and Peng Zeng and Zhen Yue and Wenliang Wang and Ye Tao and Chao Bian and Changlei Han and Qiuju Xia and Xiaohua Peng and Rui Cao and Xinhua Yang and Dongliang Zhan and Jingchu Hu and Yinxin Zhang and Henan Li and Hua Li and Ning Li and Junyi Wang and Chanchan Wang and Renyi Wang and Tao Guo and Yanjie Cai and Chengzhang Liu and Haitao Xiang and Qiuxiang Shi and Ping Huang and Qingchun Chen and Yingrui Li and Jun Wang and Zhihai Zhao and Jian Wang",
year = "2012",
doi = "10.1038/nbt.2195",
language = "English",
volume = "30",
pages = "549--554",
journal = "Nature Biotechnology",
issn = "1087-0156",
publisher = "nature publishing group",
number = "6",

}

RIS

TY - JOUR

T1 - Genome sequence of foxtail millet (Setaria italica) provides insights into grass evolution and biofuel potential

AU - Zhang, Gengyun

AU - Liu, Xin

AU - Quan, Zhiwu

AU - Cheng, Shifeng

AU - Xu, Xun

AU - Pan, Shengkai

AU - Xie, Min

AU - Zeng, Peng

AU - Yue, Zhen

AU - Wang, Wenliang

AU - Tao, Ye

AU - Bian, Chao

AU - Han, Changlei

AU - Xia, Qiuju

AU - Peng, Xiaohua

AU - Cao, Rui

AU - Yang, Xinhua

AU - Zhan, Dongliang

AU - Hu, Jingchu

AU - Zhang, Yinxin

AU - Li, Henan

AU - Li, Hua

AU - Li, Ning

AU - Wang, Junyi

AU - Wang, Chanchan

AU - Wang, Renyi

AU - Guo, Tao

AU - Cai, Yanjie

AU - Liu, Chengzhang

AU - Xiang, Haitao

AU - Shi, Qiuxiang

AU - Huang, Ping

AU - Chen, Qingchun

AU - Li, Yingrui

AU - Wang, Jun

AU - Zhao, Zhihai

AU - Wang, Jian

PY - 2012

Y1 - 2012

N2 - Foxtail millet (Setaria italica), a member of the Poaceae grass family, is an important food and fodder crop in arid regions and has potential for use as a C(4) biofuel. It is a model system for other biofuel grasses, including switchgrass and pearl millet. We produced a draft genome (∼423 Mb) anchored onto nine chromosomes and annotated 38,801 genes. Key chromosome reshuffling events were detected through collinearity identification between foxtail millet, rice and sorghum including two reshuffling events fusing rice chromosomes 7 and 9, 3 and 10 to foxtail millet chromosomes 2 and 9, respectively, that occurred after the divergence of foxtail millet and rice, and a single reshuffling event fusing rice chromosome 5 and 12 to foxtail millet chromosome 3 that occurred after the divergence of millet and sorghum. Rearrangements in the C(4) photosynthesis pathway were also identified.

AB - Foxtail millet (Setaria italica), a member of the Poaceae grass family, is an important food and fodder crop in arid regions and has potential for use as a C(4) biofuel. It is a model system for other biofuel grasses, including switchgrass and pearl millet. We produced a draft genome (∼423 Mb) anchored onto nine chromosomes and annotated 38,801 genes. Key chromosome reshuffling events were detected through collinearity identification between foxtail millet, rice and sorghum including two reshuffling events fusing rice chromosomes 7 and 9, 3 and 10 to foxtail millet chromosomes 2 and 9, respectively, that occurred after the divergence of foxtail millet and rice, and a single reshuffling event fusing rice chromosome 5 and 12 to foxtail millet chromosome 3 that occurred after the divergence of millet and sorghum. Rearrangements in the C(4) photosynthesis pathway were also identified.

U2 - 10.1038/nbt.2195

DO - 10.1038/nbt.2195

M3 - Journal article

C2 - 22580950

VL - 30

SP - 549

EP - 554

JO - Nature Biotechnology

JF - Nature Biotechnology

SN - 1087-0156

IS - 6

ER -

ID: 46238778