Standard
Standards recommendations for the Earth BioGenome Project. / Lawniczak, Mara K. N.; Durbin, Richard; Flicek, Paul; Lindblad-Toh, Kerstin; Wei, Xiaofeng; Archibald, John M.; Baker, William J.; Belov, Katherine; Blaxter, Mark L.; Bonet, Tomas Marques; Childers, Anna K.; Coddington, Jonathan A.; Crandall, Keith A.; Crawford, Andrew J.; Davey, Robert P.; Palma, Federica Di; Fang, Qi; Haerty, Wilfried; Hall, Neil; Hoff, Katharina J.; Howe, Kerstin; Jarvis, Erich D.; Johnson, Warren E.; Johnson, Rebecca N.; Kersey, Paul J.; Liu, Xin; Lopez, Jose Victor; Myers, Eugene W.; Pettersson, Olga Vinnere; Phillippy, Adam M.; Poelchau, Monica F.; Pruitt, Kim D.; Rhie, Arang; Castilla-Rubio, Juan Carlos; Sahu, Sunil Kumar; Salmon, Nicholas A.; Soltis, Pamela S.; Swarbreck, David; Thibaud-Nissen, Françoise; Wang, Sibo; Wegrzyn, Jill L.; Zhang, Guojie; Zhang, He; Lewin, Harris A.; Richards, Stephen.
In:
PNAS, Vol. 119, No. 4, e2115639118, 2022.
Research output: Contribution to journal › Journal article › Research › peer-review
Harvard
Lawniczak, MKN, Durbin, R, Flicek, P, Lindblad-Toh, K, Wei, X, Archibald, JM, Baker, WJ, Belov, K, Blaxter, ML, Bonet, TM, Childers, AK, Coddington, JA, Crandall, KA, Crawford, AJ, Davey, RP, Palma, FD, Fang, Q, Haerty, W, Hall, N, Hoff, KJ, Howe, K, Jarvis, ED, Johnson, WE, Johnson, RN, Kersey, PJ, Liu, X, Lopez, JV, Myers, EW, Pettersson, OV, Phillippy, AM, Poelchau, MF, Pruitt, KD, Rhie, A, Castilla-Rubio, JC, Sahu, SK, Salmon, NA, Soltis, PS, Swarbreck, D, Thibaud-Nissen, F, Wang, S, Wegrzyn, JL
, Zhang, G, Zhang, H, Lewin, HA & Richards, S 2022, '
Standards recommendations for the Earth BioGenome Project',
PNAS, vol. 119, no. 4, e2115639118.
https://doi.org/10.1073/pnas.2115639118APA
Lawniczak, M. K. N., Durbin, R., Flicek, P., Lindblad-Toh, K., Wei, X., Archibald, J. M., Baker, W. J., Belov, K., Blaxter, M. L., Bonet, T. M., Childers, A. K., Coddington, J. A., Crandall, K. A., Crawford, A. J., Davey, R. P., Palma, F. D., Fang, Q., Haerty, W., Hall, N., ... Richards, S. (2022).
Standards recommendations for the Earth BioGenome Project.
PNAS,
119(4), [e2115639118].
https://doi.org/10.1073/pnas.2115639118Vancouver
Lawniczak MKN, Durbin R, Flicek P, Lindblad-Toh K, Wei X, Archibald JM et al.
Standards recommendations for the Earth BioGenome Project.
PNAS. 2022;119(4). e2115639118.
https://doi.org/10.1073/pnas.2115639118Author
Lawniczak, Mara K. N. ; Durbin, Richard ; Flicek, Paul ; Lindblad-Toh, Kerstin ; Wei, Xiaofeng ; Archibald, John M. ; Baker, William J. ; Belov, Katherine ; Blaxter, Mark L. ; Bonet, Tomas Marques ; Childers, Anna K. ; Coddington, Jonathan A. ; Crandall, Keith A. ; Crawford, Andrew J. ; Davey, Robert P. ; Palma, Federica Di ; Fang, Qi ; Haerty, Wilfried ; Hall, Neil ; Hoff, Katharina J. ; Howe, Kerstin ; Jarvis, Erich D. ; Johnson, Warren E. ; Johnson, Rebecca N. ; Kersey, Paul J. ; Liu, Xin ; Lopez, Jose Victor ; Myers, Eugene W. ; Pettersson, Olga Vinnere ; Phillippy, Adam M. ; Poelchau, Monica F. ; Pruitt, Kim D. ; Rhie, Arang ; Castilla-Rubio, Juan Carlos ; Sahu, Sunil Kumar ; Salmon, Nicholas A. ; Soltis, Pamela S. ; Swarbreck, David ; Thibaud-Nissen, Françoise ; Wang, Sibo ; Wegrzyn, Jill L. ; Zhang, Guojie ; Zhang, He ; Lewin, Harris A. ; Richards, Stephen. / Standards recommendations for the Earth BioGenome Project. In: PNAS. 2022 ; Vol. 119, No. 4.
Bibtex
@article{e601835e77e541588b6ac59a26e89a05,
title = "Standards recommendations for the Earth BioGenome Project",
abstract = "A global international initiative, such as the Earth BioGenome Project (EBP), requires both agreement and coordination on standards to ensure that the collective effort generates rapid progress toward its goals. To this end, the EBP initiated five technical standards committees comprising volunteer members from the global genomics scientific community: Sample Collection and Processing, Sequencing and Assembly, Annotation, Analysis, and IT and Informatics. The current versions of the resulting standards documents are available on the EBP website, with the recognition that opportunities, technologies, and challenges may improve or change in the future, requiring flexibility for the EBP to meet its goals. Here, we describe some highlights from the proposed standards, and areas where additional challenges will need to be met.",
keywords = "Earth BioGenome Project, Ethics, Genome assembly, Genomics",
author = "Lawniczak, {Mara K. N.} and Richard Durbin and Paul Flicek and Kerstin Lindblad-Toh and Xiaofeng Wei and Archibald, {John M.} and Baker, {William J.} and Katherine Belov and Blaxter, {Mark L.} and Bonet, {Tomas Marques} and Childers, {Anna K.} and Coddington, {Jonathan A.} and Crandall, {Keith A.} and Crawford, {Andrew J.} and Davey, {Robert P.} and Palma, {Federica Di} and Qi Fang and Wilfried Haerty and Neil Hall and Hoff, {Katharina J.} and Kerstin Howe and Jarvis, {Erich D.} and Johnson, {Warren E.} and Johnson, {Rebecca N.} and Kersey, {Paul J.} and Xin Liu and Lopez, {Jose Victor} and Myers, {Eugene W.} and Pettersson, {Olga Vinnere} and Phillippy, {Adam M.} and Poelchau, {Monica F.} and Pruitt, {Kim D.} and Arang Rhie and Castilla-Rubio, {Juan Carlos} and Sahu, {Sunil Kumar} and Salmon, {Nicholas A.} and Soltis, {Pamela S.} and David Swarbreck and Fran{\c c}oise Thibaud-Nissen and Sibo Wang and Wegrzyn, {Jill L.} and Guojie Zhang and He Zhang and Lewin, {Harris A.} and Stephen Richards",
note = "Publisher Copyright: {\textcopyright} 2022 National Academy of Sciences. All rights reserved.",
year = "2022",
doi = "10.1073/pnas.2115639118",
language = "English",
volume = "119",
journal = "Proceedings of the National Academy of Sciences of the United States of America",
issn = "0027-8424",
publisher = "The National Academy of Sciences of the United States of America",
number = "4",
}
RIS
TY - JOUR
T1 - Standards recommendations for the Earth BioGenome Project
AU - Lawniczak, Mara K. N.
AU - Durbin, Richard
AU - Flicek, Paul
AU - Lindblad-Toh, Kerstin
AU - Wei, Xiaofeng
AU - Archibald, John M.
AU - Baker, William J.
AU - Belov, Katherine
AU - Blaxter, Mark L.
AU - Bonet, Tomas Marques
AU - Childers, Anna K.
AU - Coddington, Jonathan A.
AU - Crandall, Keith A.
AU - Crawford, Andrew J.
AU - Davey, Robert P.
AU - Palma, Federica Di
AU - Fang, Qi
AU - Haerty, Wilfried
AU - Hall, Neil
AU - Hoff, Katharina J.
AU - Howe, Kerstin
AU - Jarvis, Erich D.
AU - Johnson, Warren E.
AU - Johnson, Rebecca N.
AU - Kersey, Paul J.
AU - Liu, Xin
AU - Lopez, Jose Victor
AU - Myers, Eugene W.
AU - Pettersson, Olga Vinnere
AU - Phillippy, Adam M.
AU - Poelchau, Monica F.
AU - Pruitt, Kim D.
AU - Rhie, Arang
AU - Castilla-Rubio, Juan Carlos
AU - Sahu, Sunil Kumar
AU - Salmon, Nicholas A.
AU - Soltis, Pamela S.
AU - Swarbreck, David
AU - Thibaud-Nissen, Françoise
AU - Wang, Sibo
AU - Wegrzyn, Jill L.
AU - Zhang, Guojie
AU - Zhang, He
AU - Lewin, Harris A.
AU - Richards, Stephen
N1 - Publisher Copyright:
© 2022 National Academy of Sciences. All rights reserved.
PY - 2022
Y1 - 2022
N2 - A global international initiative, such as the Earth BioGenome Project (EBP), requires both agreement and coordination on standards to ensure that the collective effort generates rapid progress toward its goals. To this end, the EBP initiated five technical standards committees comprising volunteer members from the global genomics scientific community: Sample Collection and Processing, Sequencing and Assembly, Annotation, Analysis, and IT and Informatics. The current versions of the resulting standards documents are available on the EBP website, with the recognition that opportunities, technologies, and challenges may improve or change in the future, requiring flexibility for the EBP to meet its goals. Here, we describe some highlights from the proposed standards, and areas where additional challenges will need to be met.
AB - A global international initiative, such as the Earth BioGenome Project (EBP), requires both agreement and coordination on standards to ensure that the collective effort generates rapid progress toward its goals. To this end, the EBP initiated five technical standards committees comprising volunteer members from the global genomics scientific community: Sample Collection and Processing, Sequencing and Assembly, Annotation, Analysis, and IT and Informatics. The current versions of the resulting standards documents are available on the EBP website, with the recognition that opportunities, technologies, and challenges may improve or change in the future, requiring flexibility for the EBP to meet its goals. Here, we describe some highlights from the proposed standards, and areas where additional challenges will need to be met.
KW - Earth BioGenome Project
KW - Ethics
KW - Genome assembly
KW - Genomics
U2 - 10.1073/pnas.2115639118
DO - 10.1073/pnas.2115639118
M3 - Journal article
C2 - 35042802
AN - SCOPUS:85123114681
VL - 119
JO - Proceedings of the National Academy of Sciences of the United States of America
JF - Proceedings of the National Academy of Sciences of the United States of America
SN - 0027-8424
IS - 4
M1 - e2115639118
ER -
