MSc theses
Weikun Liu Efficient Simulation of realistic Quantum Dot Arrays Date: 29-09-2023 |
Yun Qin Cross-species comparison of conserved neuron cell types important in spatial processing Date: 14-09-2023 |
Yaxin Jing Exploring the mediation of insulin resistance variants in their risk of type 2 diabetes according to their associations with adiposity and body composition Date: 14-09-2023 |
Olivia Simone Jørgensen Pangenome analysis in Rice Date: 30-08-2023 |
Francisca Sanchez Neves d S Alves A Comparative Analysis of Kinship Inference Software in Bioinformatics for Accurate Relationship Assessment Date: 25-08-2023 |
Shanshan He Single-cell Mosaic Data Integration of Human Liver and Muscle using the 10X Multiome Date: 08-08-2023 |
Anja Bering Vejdiksen Analyzing full-length RNAs from a new Oxford nanopore sequencing protocol Date: 26-06-2023 |
Michaela Válková Supervised Machine Learning in Migraine Date: 22-06-2023 |
David Rodriguez Morales A-to-I RNA Editing: computational detection and involvement in the development of cardiomyocytes Date: 22-06-2023 |
Victor Emil Møller Unveiling Sodium Leak Channel regulation: In Silico Predictions of Potential Interfaces and Interaction Partners for the NALCN channel complex Date: 22-06-2023 |
Rebecca Distefano Identification of dysregulated protein-coding and lncRNA genes induced by doxorubicin treatment: unveiling regulatory mechanisms and advancing resources for lncRNA research Date: 22-06-2023 |
Weizhe Zhang A Comprehensive Investigation of DNA Methylation Biomarkers in Asthma and Allergic Rhinitis Date: 20-06-2023 |
Gerardo José Rodríguez Alarcón Influence of body size changes from childhood to adulthood on mental and cardiovascular health: Exploring genetic perspectives Date: 20-06-2023 |
Shuqing Han Benchmarking Variant Effect Predictors for GPCRs based on cell-based pharmacological measurements and phenotype association summary statistics Date: 19-06-2023 |
Pablo Atienza Lopez MsC in Bioinformatics Thesis: Metagenome-sequencing analysis of the fecal microbiome of patients with optic neurits and multiple sclerosis Date: 19-06-2023 |
Naiyu Hu Ultra-fast metaproteomics profiling of human saliva using PASEF DIA Date: 18-06-2023 |
Jonas Blomquist Jørgensen Exploring B-cell receptor repertoires Date: 16-06-2023 |
Jule Anne Drewalowski Comparative analysis of genome size across syngnathiform fishes Date: 16-06-2023 |
Isabel Marleen Pötzsch Tree-sequence-based inference of demographic models via Approximate Bayesian Computation Date: 15-06-2023 |
Finnja Hendrike Becker Identification of cell type-specific open chromatin regions based on single-cell profiling of human hypothalamus tissue Date: 14-06-2023 |
No Name No Name Range-wide population genomics of bowhead whales Date: 14-06-2023 |
Yulin Sun The genetic consequences of introgression between polar and brown bears Date: 14-06-2023 |
Conor O'Hare Palaeogenomics of llama and alpaca from Atacama desert Date: 14-06-2023 |
Lan Hoa Diep Variational Autoencoder on multi-omics data: Learning representations and associations in obesity Date: 13-06-2023 |
Zhuyang Lin Multimodal Deep Generative Decoder Date: 13-06-2023 |
Xinyuan Liu Metagenomic Binning using Graph Neural Network Date: 13-06-2023 |
Aleksandra Laura Pach Challenges and prospects for palaeodietary reconstruction using shotgun metagenomics Date: 13-06-2023 |
Taraneh Strunk RNA Velocity of Cell Hashing Data Date: 12-06-2023 |
Eoghan Thomas Reilly Exploring analysis techniques for imaging-based spatial transcriptomic data Date: 12-06-2023 |
Nuno Bischofberger Single-cell analysis of gamma-delta T cell repertoires in African volunteers Date: 09-06-2023 |
Luca Robinson Gene set enrichment analysis as a clinical tool for cancer diagnostics Date: 08-06-2023 |
Javier Sánchez Lorente Effects of RNA Editing on Drug Targeted Proteins Date: 08-06-2023 |
Jaime Moreno Martinez Identification of ligand-receptor interactions in CKD and NASH through the integration of single cell and spatial transcriptomics Date: 08-06-2023 |
Yichen Wang Key Points Prediction and Explanation Using ViT for Facial Expression Analysis in Mice Date: 13-04-2023 |
María José Romero Lado Genetic Basis of Increased Adiposity and Low Lean Mass: Body Composition and Cardiometabolic Implications Date: 27-03-2023 |
Valeria Goffert Advanced Computational Variant Prioritisation and Analysis for Patients Suspected of Inherited Bleeding Disorders - a Clinical Genomics Pipeline Date: 28-02-2023 |
Ignasi Andreu Godall Elucidating spaced k-mers & autoencoders in Bioinformatics Date: 25-01-2023 |
Henrietta Holze Single-Cell Proteomics and Transcriptomics Analysis of Acute Myeloid Leukemia Date: 24-01-2023 |
Jan Nart Genome wide association study of chromosome X for metabolic phenotypes and RNA-seq data of 4630 Greenland Inuit Date: 13-01-2023 |
Siyuan Guo Understanding plasma proteomics LC-MS raw data with Advanced Deep Learning Strategies Date: 20-12-2022 |
Ziwei Xu Supervoxel agglomeration and cell tracking problem solved jointly Date: 01-11-2022 |
Dovyas Vaitkus Are molecular mechanics enough to predict glycosylation specificity by glycosyltransferases? Date: 03-10-2022 |
Mònica Aguilà I Sans Orphan Cas - Viral Subversion of Host Defense via Molecular Piracy of Immune Components Date: 03-10-2022 |
Alvaro Bustos Gutierrez Analysis of somatic mitochondrial mutations in public scRNA-seq data to investigate clonal expansion in human atherosclerosis Date: 21-09-2022 |
Ioannis Louloudis Advanced Computational Variant Prioritisation and Analysis of Patients Suspected of Inherited Bleeding Disorders - a Clinical Genomics Pipeline Date: 07-09-2022 |
Maria Matorra Miguel Implementation of a new algorithm for the classification of germline genetic variants obtained by NGS. Comparison to other classification software and case examples Date: 02-09-2022 |
Alexander Munk Welford A graph based approach for generating multiple structure alignments of RNA, based on consistently aligned positions in pairwise alignments Date: 30-06-2022 |
Valentas Brasas Clinical interpretation of genetic variants using evolutionary data and deep learning models of VAE, AAE, GAN Date: 29-06-2022 |
Tim Møller Eyrich The Combined Impact of Common Genetic Variants on LDL Cholest Date: 28-06-2022 |
Brede Aksdal Sørland Risk markers for microvascular complications in individuals with type 1 diabetes - a metabolomics approach Date: 28-06-2022 |
Thomas Gade Koefoed Cell-type-specific stratification of polygenic Date: 28-06-2022 |
Caroline Linnea Elin Lennartsson Investigating functions of short ORFs-derived small proteins using deep learning Date: 27-06-2022 |
Arman Simonyan Towards automated decision support for inclusion in Phase 1 clinical trials based on transcriptomic and pharmacogenomic data Date: 24-06-2022 |
Rachael Marie De Vries Investigating Disease Representation in Single-Cell RNA-Sequencing Data with Deep Generative Models Date: 21-06-2022 |
Mads Kristian Holm A global analysis of multiply substituted variants to improve protein function Date: 21-06-2022 |
Zelin Li Should we treat articles equally? Introducing article weights in text mining of the scientific literature Date: 17-06-2022 |
Xiqing Mao Detecting the different types of relationships between lifestyle factors and diseases with deep learning Date: 17-06-2022 |
Roosa Katariina Varjus From clinical to mobile AI-based dermatological diagnosis using deep adversarial domain adaptat Date: 16-06-2022 |
Jiajun He Deep Ancestral Protein Sequence Reconstruction: Latent Tree, Learnable Alignment and Mini-batch Train Date: 16-06-2022 |
Raquel Sanz Martinez Different Transcriptomic Profiles in Pre-conceptional Endometrium from Women with Recurrent Pregnancy Loss Date: 15-06-2022 |
Wenqi Wang Tissue isolation in spatial epigenomics data using image process Date: 15-06-2022 |
Cas Blaauw Building NetOGlyc 5.0: Transfer learning with protein language models for O-GalNAc glycosylation prediction Date: 14-06-2022 |
Anna Magdalena Klarkowska Activity-by-contact modelling of gene regulatory interactions informed by transcriptional activity Date: 13-06-2022 |
Signe Kjærsgaard Schierbech Improved putative BGC resolution across Termitomyces genera through manual gene searching Date: 10-06-2022 |
Shuxin He Classify RNA Exosome Sensitive Internal CAGE Promoters by Using Exosome-Independent Mean Date: 09-06-2022 |
Binhuan Sun Predictive power of predicted TFBSs for cell specificity of enhancers in cell-type facets Date: 09-06-2022 |
Sejun Kim Inferring Gene Regulatory Network during Cellular State Transition in Pancreatic Ductal Adenocarcinoma Date: 22-04-2022 |
Jakob Sture Madsen Investigation into G-protein-coupled receptor genetic variants in the UK Biobank Date: 26-01-2022 |
Bowen Xiao Benchmarking RIsearch3 for RNA-RNA interactions between two transcriptomes Date: 26-01-2022 |
Malte Juhl-Vollers Hardness of Linkage Problems Date: 14-01-2022 |
Markus Scharnagl Evaluating the addition of Modern Hopfield networks to a Transformer Neural Network applied to Protein Secondary Structure Prediction Date: 15-12-2021 |
Michael Lawrence Widdowson Investigating the environmental distribution of Phage Inducible Chromosomal Islands Date: 10-12-2021 |
Shahriyar Mahdi Robbani Expanding the Portfolio of Graph Analyses Methods in PyInteraph Date: 09-11-2021 |
Xiaoyu Liu The Multi-omics Analysis of Profiling Type 2 Diabetes (T2D) gut microbial features Date: 08-11-2021 |
Danfei Zhu Identifying Driver Mutations of Cell Clustering in AML Date: 04-10-2021 |
Yuejiao Huang Mining ancient viral pathogen DNA: a bioinformatics workflow for recovering ultra-low coverage genom Date: 14-09-2021 |
Xuening He Using autoencoder for dimensionality reduction to address covariate shift in transcriptomic data Date: 10-09-2021 |
Lei Huang Demographic Modelling of Early Eurasians with Allele Count Data Date: 09-09-2021 |
Martina Cardinali Gene regulatory networks and lineage trajectories: insights on early human neural development Date: 06-09-2021 |
Katja Johansen Text mining of pharmacologically relevant human protein complexes Date: 27-08-2021 |
Jean-Baptiste Michel P Van Den Broucke Engineering protein double mutants with convolutional neural networks Date: 10-08-2021 |
Stefano Pellegrini Development of a supervised machine learning tool to infer active regulatory elements from transcription initiation events Date: 12-07-2021 |
Niamh Emily Eleanor Lacy-Roberts Molecular Piracy of Orphan Cas Proteins by Anti-CRISPRs Date: 25-06-2021 |
Richard Michael Predictive Protein Property Modeling through Gaussian Processes and Encoding Methods Date: 24-06-2021 |
Liis Kivistik Evaluating task- and resting-state functional connectivity differences in major depressive disorder and prediction of antidepressant treatment response Date: 24-06-2021 |
Dewei Hu Rationalizing Clinical Text Makes ICD Codes Assigning More Interpretable Date: 23-06-2021 |
Yijia Xie Mining the literature to detect connections between lifestyle and diseases Date: 22-06-2021 |
Feng Feng Using machine learning as a weapon to fight scientific fraud by detecting paper-mill publications Date: 22-06-2021 |
Yixin Lin The impact of somatic structural variants in the human brain Date: 22-06-2021 |
Mads Porse Pedersen Funktionel fortolkning af CNS-sygdomsetiologier gennem integrering af genetiske risikofaktorer med enkeltcellet genekspression Date: 21-06-2021 |
Ziheng Liu Image Segmentation Analysis of Small Intestinal Epithelial 3D Confocal Images with Deep Learning Date: 18-06-2021 |
Yifan Dai Gene Expression and Variation Changes During Acid Adaptation of Mouse Pancreatic Organoids Date: 17-06-2021 |
Helena Christina Britze Assessing protein multi-variant stability predictions in the context of protein design Date: 17-06-2021 |
Javier Marchena Hurtado Structural insights into stand-alone Ring Nucleases in type III CRISPR-Cas systems Date: 17-06-2021 |
Barbara Puzek Response eQTL analysis of lymphoblastoid cell lines Date: 17-06-2021 |
Núria Hermosilla Albala Effect of environment and host genetics on the gut microbiota of wild guinea pigs Date: 16-06-2021 |
Alexandra Christina Anastasiado Batch correction for single-cell RNA-seq using Variational Autoencoder Date: 14-06-2021 |
Teemu Kalle Eemeli Rönkkö Pharmaco-Proteomics of Diabetic Kidney Disease Date: 14-06-2021 |
Viktoria Anita Lavro Simulation of realistic sc-mRNA-seq data from bulk samples Date: 14-06-2021 |
Joshua Daniel Rubin Improving the Protein Structure Network Method of PyInteraph Based on Distances between Centers of Mass Date: 10-06-2021 |
Mustafa Khudhair Abbas Al-Azawi Exploring genetic determinants of fibrotic liver disease Date: 08-06-2021 |
Antanas Zilakauskis Exploring the implementation of protein energy functions in JAX MD Date: 27-05-2021 |
Ryan William Moreau Bayesian Neural Network for Protein Prediction Date: 10-05-2021 |
Melina Elena Mazaraki Protein structure prediction on Torus-DBN, a deep probabilistic model. Date: 26-03-2021 |
Aristos Fois Protein structure prediction on Torus-DBN, a deep probabilistic model. Date: 26-03-2021 |
Jakob Guldberg Aaes Automated Assessment of Tumor Regression During Radiation Treatment using Cone Beam Computed Tomography Date: 25-03-2021 |
Rune Vium Søndergaard Automated Assessment of Tumor Regression During Radiation Treatment usingCone Beam Computed Tomography Date: 25-03-2021 |
Albert Schilling Kalnæs Classifying Squamous Cell Carcinoma and Adenocarcinoma from gene expression data using machine learning Date: 22-02-2021 |
Anders Lykkebo-Valløe Brain-state dynamics during psilocybin interventions Date: 20-02-2021 |
Edith Angelica Rodriguez Prado A LSTM model for predicting genomic features in non-coding regions of the genome related to developmental disorders. Date: 16-02-2021 |
Joaquim Ollé López Single-cell RNAseq analysis of Human oocytes Date: 12-02-2021 |
Frederik Filip Stæger The PROMISing cohort Date: 08-02-2021 |
Kasper Fischer-Rasmussen Computational Inference of Interactions between Mutations and their Role in Childhood Asthma Date: 03-02-2021 |
Martyna Trojgo Protein structure prediction using deep probabilistic programming. Investigating the influence of prior distributions. Date: 03-02-2021 |
Jan Mikolaj Kaminski Deep Ensemble Model, as a potential solution to overcome limited amount of training data in the case of biomedical image segmentation. Date: 13-01-2021 |
Nikolin Prenga Probabilistic Programming Date: 04-01-2021 |
Rani Nielsen Investigating relationships between ancient genomes and associated meta data using Deep Learning Date: 03-12-2020 |
Aparna Prasad Evaluating the influence of reference genome selection on evolutionary inferences Date: 25-11-2020 |
Zhe Xue Genome Data Visualization and Structure Detection Using Non-linear Dimension Reduction Tools Date: 11-11-2020 |
Liuqing Zheng A time course analysis of transcriptome and proteome data from mouse and human Date: 22-10-2020 |
Pablo Iáñez Picazo Demographic inference using a MCMC-coupled GenerativeAdversarial Network Date: 22-10-2020 |
Yueying Fu A time course analysis of transcriptome and proteome data from mouse and human Date: 22-10-2020 |
Jilong Ma Adaptive History of Dogs and Wolves Date: 22-10-2020 |
Andreas Ørslev Rasmussen Prioritisation of known and novel disease-causing variants in patients suspected of inherited bleeding disorders - a tool for data mining and automated PDF report generation Date: 22-10-2020 |
Aidas Marijus Vysniauskas Genomic analysis of prophages in Vibrio species Date: 21-10-2020 |
Ida Callesen Dissecting the genetics of Menstrual Migraine Date: 20-10-2020 |
Rikke Louise Jacobsen Dissecting the genetics of Menstrual Migraine Date: 20-10-2020 |
Zhuoyuan Liu Deep learning for diagnosis of ulcerative colitis Date: 20-10-2020 |
Marius Makaras Body-mass index and blood serum lipid specific polygenic risk score application in children and adolescents Date: 10-10-2020 |
Teodora-Francesca Ràdut Protein structure prediction usingdeep probabilistic programming: model choice and hyperparameters Date: 09-10-2020 |
Guangzheng Weng Implementation of a new trajectory inference tool: VeTra Date: 09-10-2020 |
Nicola Alexandra Vogel Hierarchical multiclass supervised classification of metabarcoded environmental DNA in a forensic context Date: 09-10-2020 |
Christian Sigvald Breinholt Protein structure prediction using deep probabilistic programming and directional statistics Date: 09-10-2020 |
Silvija Pupsaite Bayesian Deep Learning with Hamiltonian Monte Carlo Date: 06-10-2020 |
Sizhuo Li Deep Learning For the Analysis of Arthritic Knee X-rays Date: 16-09-2020 |
Michael Roger West Genome wide association of host genetic control of HIV in a meta-analysis of the five INSIGHT HIV+ cohorts. Date: 10-09-2020 |
Mario García Ureña In silico identification of molecular pathways and key genes behind abdominal fat accumulation given lean body constitution Date: 10-09-2020 |
Malthe Sebro Rasmussen Accurate estimation of allele frequency covariance from NGS data for improved admixture inference Date: 03-09-2020 |
Taoyu Mei Multi-omics Data Analysis of Alzheimer's Disease with a Focus on Mitochondria, Mitophagy, and Oxidative Stress Response Date: 24-08-2020 |
Miren Iraeta Orbegozo Estimating Relatedness in Ancient Populations using Low-depth Sequencing Data Date: 18-08-2020 |
Pau Piera Líndez Metagenomics binning using deep learning techniques Date: 13-08-2020 |
Maliha Mashkoor Semi- and fully automatic analysis of Perineuronal Networks Date: 10-08-2020 |
Liubov Pashkova Integration of single cell transcriptomic atlases with genome-wide association studies to discover likely etiological cell types underlying intelligence and obesity Date: 27-07-2020 |
Tetyana Bayzetinova A multi-omics investigation of the etiology of Tourette syndrome integrating DNA methylation and mRNA-sequencing data from pairs of affected and unaffected monozygotic twins. Date: 10-07-2020 |
Nuttapong Mekvipad BERT-based context-aware classifier for biomedical relation extraction Date: 19-06-2020 |
Oliver Knights Møller Benchmarking of data integration methods on single-cell RNA sequencing data from temporally and regionally distinct human neural stem cells Date: 30-04-2020 |
Floris Julian van der Flier Dilated Convolutional Neural Networks for Small Protein and Individual Domain Tertiary Structure Prediction Date: 19-12-2019 |
Kristine Nielsen Evaluating measures of intra Date: 16-12-2019 |
Danai Vagiaki Integration of electronic health records to predict the development of diabetes using deep learning. Date: 30-10-2019 |
Andreas Manoukian 3D Structure Prediction through Probablistic Programming Date: 10-10-2019 |
No Name TMHMM3: Application of Deep Learning for Transmembrane Topology Prediction and Classification of Transmembrane Proteins Date: 07-10-2019 |
Lishan Cai Deep Learning Segmentation for Knee MRI with Shape Prior Date: 27-09-2019 |
Povilas Matusevicius Investigating the evolution of olfactory receptor genes in the ruminants using comparative genomics Date: 26-09-2019 |
Guido Barzaghi Unveiling Human Neural Developmental Dynamics Through RNA Velocity Of Single Cells Date: 26-09-2019 |
Sergio Andreu Sánchez Mitochondrial influence in avian adaptation and evolution Date: 26-09-2019 |
Luiza Dominika Czerwinska Segmentation of microscopic brain images from a mouse model of amyotrophic lateral sclerosis using a convolutional neural network Date: 23-09-2019 |
Chenhao Wang The Computerized Analysis of Tongue Papillae Date: 23-09-2019 |
Jing Lin Statistical analysis of pyramidal cells in brain tissue Date: 23-09-2019 |
Steven Dennis Pilger Rationalizing and predicting GPCR - G protein selectivity: a new structure interface - sequence alignment online research tool Date: 20-09-2019 |
Soham Ravindra Shinde Functional Characterisation of RNA binding proteins by analysing Systematic Alternative Splicing Patterns Date: 20-09-2019 |
Emily Barot Optimisation of Voxelwise and Surface-Based Preprocessing Pipelines for PET Data Date: 19-09-2019 |
Lars E Bustamante Christoffersen Identifying Divergent Celltypes Between Conditions using Single-Cell RNA-Seq Data Date: 18-09-2019 |
Rasmus Henrik Amund Henriksen Mapping of oxford nanopore long sequenced reads to identify extrachromosomal circular DNA Date: 17-09-2019 |
Genis Garcia Erill Evaluation of admixture model assumptions, inference of recent admixture and application to the study of the Grants gazelle Date: 16-09-2019 |
Oluwatobi Babatunde B Alegbe CELLECT-LDSC: Integration of single cell transcriptomic atlases with genome-wide association studies using LD score regression Date: 16-09-2019 |
Vykintas Jauniskis Assessment of generative algorithms for engineering of new molecules to treat skin diseases Date: 13-09-2019 |
Basile Nicolas Rommes Mean Field Networks for Retinal Blood Vessel Segmentation Date: 10-09-2019 |
Ruta Masiulyte Retinal blood vessel segmentation using GNNs Date: 10-09-2019 |
Adamantia Tsouchnika Using Auxiliary Information to Regularize Deep Neural Networks: A Case-study on Multi-modal Brain Tumor Segmentation Date: 03-09-2019 |
Dimitrios Chouliaras Thesis Date: 30-08-2019 |
Alba Refoyo Martínez Polygenic and single-locus selection under complex population histories Date: 21-08-2019 |
Zuqi Li DeepCNV: a deep learning-based method for calling copy number variations by image recognition Date: 08-08-2019 |
Julia Agnieszka Gnatek Thesis Report: Deconvolving Cancer and Normal Breast Tissue with Deep Learning Date: 21-06-2019 |
Shadi Mansouryar Thesis Report: Deconvolving Cancer and Normal Breast Tissue with Deep Learning Date: 21-06-2019 |
Grzegorz Jerzy Maciag Comparison between caco-2 and organoids as models for human colon inflammation Date: 14-06-2019 |
Natthawut Adulyanukosol Thesis Date: 09-11-2018 |
Enrique Goñi Echeverria Study cell line specificity with Deep Learning models on CAGE datasets Date: 09-11-2018 |
Sonia Maria Piedrahita Abella Simulation Studies to Assess the Effect of Demography in Trondheim during the Second Plague Pandemic Date: 02-11-2018 |
Adrian Otamendi Laspiur Cancer independent HRD gene expressional signature identification for the selection of phase 1 potential patients for treatment with Olaparib. Date: 25-10-2018 |
Gowthami Rajukkannu Evolutionary Pattern of Alternative Splicing Associated with Ant Caste Differentiation Date: 23-10-2018 |
Casia Nursyifa Local Ancestry Inferences and Admixture-Based Association Analysis in Inuit Population Date: 10-10-2018 |
Sofia Laghouila Risk assessment of chronic disease in the future based on lifestyle Date: 10-10-2018 |
Carlotta Porcelli Mass spectrometry data analysis and visualisation of the IL-17A osteoarthritis study Date: 01-10-2018 |
Juan Manuel Medina Mendez A Study of Plasmid-Bacterial Associations in Microbial Communities Date: 06-09-2018 |
Elmir Mahammadov Modelling Gene Regulatory Network of the Mammalian Circadian Clock Date: 05-09-2018 |
William Paul Bullock U-Net Fully-Convolutional Neural Network for Volumetric Semantic Segmentation of Magnetic Resonance Images for Osteoarthritis Staging Date: 03-09-2018 |
Ke Zhai Deep Learning of Segmentation on Knee Tibial Cartilage MRIs Date: 03-09-2018 |
Miguel Díez Fernandez De Bobadilla OLST, a New Approach for Intra-Species Diversity Characterization in Metagenomics Date: 24-08-2018 |
Adham Khaled Muhammed Mandour The Human Virome in the 1000 Genomes Project Date: 24-08-2018 |
Jesus Vicente Torresano Lominchar Local IBD Inference of an Admixed Greenlandic Population, and a new Association Test of IBD Mapping Date: 24-08-2018 |
Ioannis Chrysostomakis Inferring Migration Patterns over Historical Periods using Ancient DNA Date: 24-08-2018 |
Anja Moltke Jørgensen Evolution of Complex Traits in the Ancient Eurasian Steppe Date: 24-08-2018 |
Mathias Perslev Generalizable Deep Learning for Medical Image Segmentation Date: 22-08-2018 |
Tycho Yorrick Canter Cremers Benchmarking Predictions of Free Energy Changes upon Mutation Date: 20-08-2018 |
Migle Gabrielaite Loss and Acquisition of Genes in P. aeruginosa Populations Evolving in the Lungs of Cystic Fibrosis Patients Date: 20-08-2018 |
Maria Touceda Suarez Network Construction and Analysis from Microbial Community Meta-Omics Data. Date: 20-08-2018 |
Mette Qvistgaard Ludwig Single-Cell Transcriptomics Based Discovery of Energy Homeostasis Regulating Pathways in the Hypothalamus Date: 17-08-2018 |
Alicia Margaritha Berkvens Determinants of Constitutive Activity in Class A GPCRS Date: 15-08-2018 |
Derya Aytan-Aktug Analyzing 16S rRNA and Whole-Metagenomic Data for Diet Response Prediction Date: 14-08-2018 |
Antonio Ortega Jimenez Development of Label-free Quantification Methods in Proteomics Date: 08-08-2018 |
Siobhan Anne Mc Loughlin Investigating Structure of DNA Using Neural Networks Date: 31-05-2018 |
Derya Esdorf Bach Aslan Integrative High Throughput Sequencing in Leukemia Mouse Models Date: 31-05-2018 |
Theis Hjalte Thorn Jakobsen Convolutional Neural Network for Predicting Protein Stability by using Local Spherical Representations of Amino Acid Environments Date: 26-03-2018 |
Hyeongki Kim Dihedral Angle Prediction using Generative Adversarial Networks Date: 23-03-2018 |
Leo Alexander Dworkin Toward a Classification of Mucin Tandem Repeat Region Sequences Date: 21-03-2018 |
Lys Sanz Moreta Analysis of Avian Exome Capture Data Date: 20-02-2018 |
Simon Rødtness Poulsen Improving Short Read Alignments using Super Reads Date: 05-12-2017 |
Alfred Ferrer Florensa Predicting the Energy Content of Proteins using Deep Learning Date: 16-11-2017 |
Michael Ben Ezra Modelling of Cell Type Proportions in Aging Frontal Lobe Date: 16-11-2017 |
Mohamed Mounir A Guide To An Integrative Analysis Of the Cancder Genome Atlas Using New Features In TCGAbiolinks R/Biodconductor Package Date: 15-11-2017 |
Philip Alstrup Andersen Inferring Relatedness from Low-Depth NGS Data in the Presence of Inbreeding Date: 13-11-2017 |
Rudolfs Berzins Predicting Protein-Protein Interaction Types from Text-Mined Associations Date: 29-08-2017 |
Dongjie Zhang Influence of Intensity Normalization on CNN-based Segmentation of T1 Brain MRIs Date: 28-08-2017 |
Marcos Yebenes Mayordomo Development, Evaluation and Comparison of RNA Sequencing Pipelines Using Pseudo-Alignment against Traditional Alignment Methods Date: 23-08-2017 |
Jamshed Pratap Singh Gill Detecting Differentially Expressed Genes and Pathways between Rats from Two Different Suppliers Date: 23-08-2017 |
Marina Vabistsevits Identification of Autopagy Signatures in Breast Cancer Using the Cancer Genome Atlas Data Date: 22-08-2017 |
Jonas Meisner Framework for Analyzing Low Depth Next-Generation Sequencing Data in Heterogeneous Populations Using PCA Date: 21-08-2017 |
Inigo Prada Luengo Circle-Map Suite: Fast and Accurate Identification of Extrachromosomal Circular DNA Mediated Copy Number Variation Date: 18-08-2017 |
Timo Röder Analysis Methods for Sequence Libraries Targeting Transposable Elements Date: 15-08-2017 |
Mads Obi Bergsten Community Composition of Ammonia-Oxidizers at Two Different Pelagic Sites In the Baltic Sea Date: 08-05-2017 |
Milos Kovacevic Quantifying Compressibility of Gene Expression Data Using Neural Networks Date: 31-03-2017 |
Signe Tang Karlsen Inferring phenotypes from Bacterial Genomes Date: 30-03-2017 |
Lucía Robles Tascón Population Genomics of Historical Bee Samples Date: 21-03-2017 |
Anna Tsolakou Analysis and Visualization of Expreimental Parameters of G-protein Coupled Receptors Crystallization Date: 13-03-2017 |
Lisa Cantwell Investigation of the Database of Cysteine S-nitrosylation (dbSNO) and Structure-related Mechanisms of SNO-mediated Signaling Date: 13-12-2016 |
Sofia Popov Chracterizatin of Gu Microbiota Composition Following Intake of Dietary Fibers from Different Sources Using Next-generation Sequencing and Metagenome Analyses Date: 10-10-2016 |
Abigail Daisy Ramsøe Hybrid Classification in the Common Chimpanzee Date: 16-09-2016 |
Anders Kær Bennetsen Prediction of the Energy Content of Protein Structures Using Deep Learning Date: 15-09-2016 |
Ernesto Luis Aparicio Puerta Relating Single Neuron Transcriptomic Data and Cellular Phenotypic Traits: Tools and Techniques Date: 09-09-2016 |
Line Mærsk Staunstrup A Comprehensive Analysis of Isoform Usage in Human Tissues Date: 02-09-2016 |
Jens Erik Rovelt Andreasen Creating Extended Data Sets of Protein Structures using Loop Building and Homology Modelling Date: 31-08-2016 |
Sangzi Sandra Chen Biology in Schizophrenia Genomics: lmproving Prediction with Biological Information in Machine Learning Algorithms Date: 30-08-2016 |
Jose Juan Almagro Armenteros Prediction of Protein Subcellular Localization using Deep Learning Date: 30-08-2016 |
Andrej Gnip Application of the Reference Ratio Method on Image Classification Date: 30-08-2016 |
Juan Salamanca Viloria Conformational Changes Induced upon Redox Post-Translational Modifications of an Oncogenic Mitochondrial Chaperone Investigated by Molecular Dynamics and Network Analyses Date: 30-08-2016 |
Ricard Argelaguet Group Factor Analysis to Disentangle Common and Specific Sources of Variation between Different Molecular Layers Date: 23-08-2016 |
Xabier Calle Sanchez TumorTracer 2.0: A Method to Identify the Tissue of Origin from the Somatic Mutations of a Tumor Specimen Date: 18-08-2016 |
Joseph Patrick Michele Blair A Comparison of 2D and 3D Convolutional Neural Networks for Knee Cartilage Segmentation in MRI Date: 16-08-2016 |
Christoffer Egeberg Hother RNA-seq in Personalized Oncogenomics Date: 27-06-2016 |
Christian Ravn Statistical Models for Protein Evolution Date: 02-05-2016 |
Stylianos Bakoulis Identification and joint Analysis of Tissue MicroRNA and mRNA Experssion Profiles from Microarry Data in Ulcerative Colitis Date: 29-04-2016 |
Christian Munk Mutant Desig Tools - Developing Mutant Design Tools to Facilitate Mutagenesis Experiments for GPCRs Date: 17-03-2016 |
Anne Saaby Schmidt-Høier Investigation of Imprinting and Differential Allelic Expression in Schizophrenic Patients and Controls Date: 15-03-2016 |
Jarno Johannes Koskinen Feature Extraction of Energy Entities Used in Protein Structure Folding Prediction Date: 23-02-2016 |
Christian Grønbæk Efficient Applications of Gauss Integral Invariants for Protein Folding Predictions Date: 10-02-2016 |
André Vidas Olsen Detection of Copy Number Variation in the LuCamp Data Set and Subsequent Association Study Date: 14-12-2015 |
Evangelos Tsitlakidis Exploring Optimal Pipelines for Analyzing the Chemical and Biological Space of SmalI Molecule Compunds in LINCS L 1000 Data Date: 20-11-2015 |
Kristian Ebbesen Hanghøj Fast Aaurlg and Automatic Ancient Nucliosoml and Methylation Maps with Epipaliomix Date: 09-09-2015 |
Gáspár Pándy-Szekeres Automated Chimeric Homology Model Building Pipeline for GPCRS Date: 09-09-2015 |
Emil Jørsboe Imputation and genome-wide association studies in the admixed Greenlandic population Date: 24-08-2015 |
Sandra Capdevila Walsh Whole genome sequence analysis of five Ethiopian populations and identification of candidate genes under positive selection Date: 18-08-2015 |
Rasmus Koefoed Jakobsen Prediction of Energy Content of Proteins Date: 13-08-2015 |
Thilde Bagger Terkelsen High Throughput Analysis of Enhancer Usage in Inflammatory Bowel Disease Date: 22-06-2015 |
Kristina Aluzaité Ecaliationg Exome Sequencing of Circulationg Tumour DNA as a Tool for Mutation Detection in Relapsed Diffuse Large B-cell Lymphoma Date: 16-06-2015 |
Hancheng Zheng The Genetic Landscape of Hepatocellular Carcinomas in Chinese Population Date: 16-06-2015 |
Nikolaos Sidiropoulos Identifying Strong Survival Predictions in Acute Myeloid Leukemia Using Gene Signatures Date: 05-05-2015 |
Siyang Liu Population-scale de Novo Assembly, Mapping of Structural Variations and Novel Sequences from Deeply Sequenced Danish Trios Date: 21-04-2015 |
Hassan Omer Hamied Sirelkhatim Modelling Ancestry Specific Effects (mase) Date: 02-03-2015 |
Malte Thodberg Analysis of Differential Gene Expression in Inflammatory Bowel Disease Using Cage Data Date: 12-02-2015 |
Yatin Vijay Joshi Unfolding Genetic Diaspora of New Samples from West African Populations Date: 28-01-2015 |
Cecilia Elisabet Lövkvist Methylation of CpG Sites Date: 07-01-2015 |
Oana Palasca BW-HMM - Probabilistic Sequence Alignment Date: 16-12-2014 |
Simon Bolding Halifax Prediction of Primary Tumour Site from Molecular Signatures Date: 11-09-2014 |
Anna Hakobyan Investigation of Splicing Mechanisms of Large Intron Excision Employed in Humans Date: 05-09-2014 |
Carina Grøntved Jønck Genome Analysis of Six New Danish Potato Blight Isolates Date: 27-08-2014 |
Vipin Kumar Effect of Exosome Components & Cofactor Expression on Exotic RNA Production across the Human Body Date: 11-08-2014 |
José Victor Moreno Mayar Genome-wide Ancestry Patterns in Easter Islanders Reveal Pre-European Admixture with Native Americans Date: 19-05-2014 |
Jon Lund Steffensen Studying Escherichia Coli in the Mouse Intestinal Environment using 16S rRNA Surveys Date: 04-04-2014 |
Nicholas Anders Clark An Application of Machine Learning for Determination of Spatial Structure within and across Cell-specific Enhancers in Human Date: 14-03-2014 |
Evdoxia Karadoulama Structural-based Analysis of the Binding Preferences of RNA-Binding Proteins in the Context of miRNA Target Site Centered, Argonaute 2 Knock-down Expression Data Date: 28-02-2014 |
Maria Garcia Romo In Silico Prediction of Antibody Physicochemical Properties via Construction of Homology Models Date: 30-01-2014 |
Victor Adriano Okstoft Carmelo Calling of Short Insertions and Deletions in Deep Exome Sequencing Data Date: 16-12-2013 |
Marietta Kokla Detection of Pulmonary Thrombosis in Dogs using Texture Analysis and Multvariate Classification Models Date: 13-12-2013 |
Peter Novotny Sequencing Assembly and Annotation of the Yeast genome Debryomyces Hansenii Isolated from danish Cheese Date: 28-11-2013 |
Kortine Annina Kleinheinz In Silico Bacteriophage Host Prediction and Prophage Prediction: Is it Possible? Date: 04-10-2013 |
Kristoffer Vitting-Seerup Genome-Wide Analysis of Alternative Transciption Usage in Acute Myeloid Leukemia Patients Characterized by Biallelic C/ebpx Mutations Date: 16-08-2013 |
Adriana Pitea Comprehensive Identification and Annotation of Human MicroDNA Promoter Regions Date: 16-08-2013 |
Emil Vincent Rosenbaum Appel Estimering af fylogenetisk historie for to beslægtede populationer Date: 23-07-2013 |
Justinas Vygintas Daugmaudis Statistical Analysis and Applications Date: 31-05-2013 |
Lars Yannik Schöning Statistical Issues in Chip-seq Peak Calling Integrated Analysis and Visualization Date: 01-03-2013 |
Dagny Ros Nicolaisdottir Enzyme Classification in Metagenomics Data Date: 31-01-2013 |
Jonas Andreas Sibbesen Probabilistic Transcriptome Asselbly Date: 30-11-2012 |
Lasse Maretty Sørensen Probabilistic Transcriptome Assembly Date: 30-11-2012 |
Daniel Mulnæs Modelling PH dependent conformationac fluctuations in proteins Date: 09-11-2012 |
svd978 Discovery of mirsignatures and possible therapeutic targets for the treatment of cardiovascular diseases Date: 15-10-2012 |
Victor Tzvetanov Yakimov Machine Learning Tools for Antisense Oligonucleotide Analysis Date: 11-10-2012 |
Thorfinn Sand Korneliussen Estimering af Tajima's D og andre neutralitetsstatistikker fra Next Generation Sequence data Date: 27-09-2012 |
Vibha Raghavan Relative Ratio Test - a Novel Way to Date Ancient DNA Date: 27-09-2012 |
Lubomir Dimitrov Antonov Inferential Structure determination from Saxs Data Date: 19-09-2012 |
Razvan-Mihai Badea Enhancers and Promoter in Erythropoiesis Date: 04-09-2012 |
Pranav Kumar Computational methods in Cross-linking and Immuno-Percipitation data analysis Date: 31-08-2012 |
Daniela Salvini Relationships between two chromatin binding proteins studied by ChIP-Seq motif discovery and positional data analysis Date: 21-06-2012 |
Brian Stidsen A probabilistic model of the local structure of antibodies: Phaistos implementation Date: 08-02-2012 |
Jan Teichmann Genes with microRNA seed sites within hairpin structures show correlation with PUM2 and are related to long-term generepression Date: 28-10-2011 |
Pedro Manuel Martínez Garcia Non-canonical miRNA targeting in Arabidopsis thaliana. Date: 16-09-2011 |
Mikkel Schubert Improving ancient DNA read mapping against modern reference genomes. Date: 15-09-2011 |
Peter Stefanov Kerpedjiev using position speci_c scoring matrices for short read alignment on a compressed genome index Date: 05-09-2011 |
Berit Lilje Exploration of human tissue-specific promoters using FANTOM5 data Date: 08-08-2011 |