Computational and RNA Biology

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  1. Published

    An m6A-YTH Module Controls Developmental Timing and Morphogenesis in Arabidopsis

    Arribas Hernandez, Laura, Bressendorff, Simon, Hansen, M. H., Poulsen, C., Erdmann, S. & Brodersen, Peter, 2018, In: Plant Cell. 30, 5, p. 952-967 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  2. Published

    Post-Transcriptional Gene Regulation Mediated by Small RNAs and ARGONAUTE1 in Arabidopsis

    Arribas Hernandez, Laura, 2015, Department of Biology, Faculty of Science, University of Copenhagen. 232 p.

    Research output: Book/Report › Ph.D. thesis › Research

  3. Published

    mRNA decay of most arabidopsis miRNA targets requires slicer activity of AGO1

    Arribas Hernandez, Laura, Kielpinski, L. J. & Brodersen, Peter, 2016, In: Plant Physiology. 171, 4, p. 2620-2632 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Detection of slicer activity by immunopurified plant ARGONAUTE1

    Arribas Hernandez, Laura, Vigh, Maria Louisa & Brodersen, Peter, 2019, Plant MicroRNAs: Methods and Protocols. Folter, S. D. (ed.). Humana Press, p. 295-316 22 p. (Methods in Molecular Biology, Vol. 1932).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  5. Published

    The slicer activity of ARGONAUTE1 is required specifically for the phasing, not production, of trans-acting short interfering RNAs in Arabidopsis

    Arribas Hernandez, Laura, Marchais, A., Poulsen, C., Haase, B., Hauptmann, J., Benes, V., Meister, G. & Brodersen, Peter, 2016, In: The Plant Cell. 28, 7, p. 1563-1580 18 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Occurrence and Functions of m6A and Other Covalent Modifications in Plant mRNA

    Arribas Hernandez, Laura & Brodersen, Peter, 2020, In: Plant Physiology. 182, 1, p. 79-96 18 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Principles of mRNA targeting via the Arabidopsis m6A-binding protein ECT2

    Arribas Hernandez, Laura, Rennie, Sarah, Köster, T., Porcelli, C., Lewinski, M., Staiger, D., Andersson, Robin & Brodersen, Peter, 2021, In: eLife. 10, 33 p., e72375.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    MacroLoops for microRNAs: shall we revise the maximum allowed size?

    Arribas Hernandez, Laura, 2024, In: The Plant Cell. 36, 5, p. 1572-1573 2 p.

    Research output: Contribution to journal › Letter › Research › peer-review

  9. Published

    The YTHDF proteins ECT2 and ECT3 bind largely overlapping target sets and influence target mRNA abundance, not alternative polyadenylation

    Arribas Hernandez, Laura, Rennie, Sarah, Schon, M., Porcelli, C., Enugutti, B., Andersson, Robin, Nodine, M. D. & Brodersen, Peter, 2021, In: eLife. 10, 27 p., e72377.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Recurrent requirement for the m6A-ECT2/ECT3/ECT4 axis in the control of cell proliferation during plant organogenesis

    Arribas Hernandez, Laura, Simonini, S., Hansen, M. H., Botterweg Paredes, E., Bressendorff, Simon, Dong, Y., Østergaard, L. & Brodersen, Peter, 2020, In: Development. 147, 14, 19 p., dev189134.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Estimating narrow-sense heritability using family data from admixed populations

    Athanasiadis, G., Speed, D., Lepola, Mette Andersen, Appel, E. V. R., Grarup, Niels, Brandslund, I., Jørgensen, M. E., Larsen, C. V. L., Bjerregaard, P., Hansen, Torben & Albrechtsen, Anders, 2020, In: Heredity. 124, 6, p. 751-762 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Spatially resolved analysis of microenvironmental gradient impact on cancer cell phenotypes

    Auxillos, Jamie Yam, Crouigneau, R., Li, Y. F., Dai, Yifan, Stigliani, Arnaud, Tavernaro, I., Resch-Genger, U., Sandelin, Albin Gustav, Marie, R. & Pedersen, Stine Helene Falsig, 2024, In: Science Advances. 10, 18, 17 p., eadn3448.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Multiplex Genome Engineering for Optimizing Bioproduction in Saccharomyces cerevisiae

    Auxillos, Jamie Yam, Garcia-Ruiz, E., Jones, S., Li, T., Jiang, S., Dai, J. & Cai, Y., 19 Mar 2019, In: Biochemistry. 58, 11, p. 1492-1500 9 p.

    Research output: Contribution to journal › Review › Research › peer-review

  14. Published

    Antibodies against foot-and-mouth disease (FMD) virus in African buffalos (Syncerus caffer) in selected National Parks in Uganda (2001-2003)

    Ayebazibwe, C., Mwiine, F. N., Balinda, S. N., Tjørnehøj, K., Masembe, C., Muwanika, V. B., Okurut, A. R. A., Siegismund, Hans Redlef & Alexandersen, S., 2010, In: Transboundary and Emerging Diseases. 57, 4, p. 286-92 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    The role of African buffalos (syncerus caffer) in the maintenance of foot-and-mouth disease in Uganda

    Ayebazibwe, C., Mwiine, F. N., Tjørnehøj, K., Balinda, S. N., Muwanika, V. B., Okurut, A. R. A., Belsham, G. J., Normann, P., Siegismund, Hans Redlef & Alexandersen, S., 2010, In: BMC Veterinary Research. 6, 13 p., 54.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Patterns, risk factors and characteristics of reported and perceived foot-and-mouth disease (FMD) in Uganda

    Ayebazibwe, C., Tjørnehøj, K., Mwiine, F. N., Muwanika, V. B., Ademun Okurut, A. R., Siegismund, Hans Redlef & Alexandersen, S., 2010, In: Tropical Animal Health and Production. 42, 7, p. 1547-59 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Proteomic profiling of gill GSTs in Mytilus galloprovincialis from the North of Portugal and Galicia evidences variations at protein isoform level with a possible relation with water quality

    Azevedo, C. C., Guzman-Guillen, R., Martins, J. C., Osório, H., Vasconcelos, V., Rodrigues da Fonseca, Rute Andreia & Campos, A., 2015, In: Marine Environmental Research. 110, p. 152-161 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    HemaExplorer: a database of mRNA expression profiles in normal and malignant haematopoiesis

    Bagger, F. O., Rapin, N. P. J., Theilgaard-Mønch, Kim, Kaczkowski, B., Thorén, L. A. M., Jendholm, L. J., Winther, Ole & Porse, Bo Torben, 2013, In: Nucleic Acids Research. 41, Database issue, p. D1034-D1039 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Aberrant Gene Expression in Acute Myeloid Leukaemia

    Bagger, F. O., 2014, Department of Biology, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  20. Published

    HemaExplorer: a Web server for easy and fast visualization of gene expression in normal and malignant hematopoiesis

    Bagger, F. O., Rapin, N. P. J., Theilgaard-Mønch, Kim, Kaczkowski, B., Jendholm, L. J., Winther, O. & Porse, Bo Torben, 2012, In: Blood. 119, 26, p. 6394-6395 2 p.

    Research output: Contribution to journal › Comment/debate › Research

  21. Published

    BloodSpot: a database of gene expression profiles and transcriptional programs for healthy and malignant haematopoiesis

    Bagger, F. O., Sasivarevic, D., Hadi Sohi, S., Laursen, L. G., Pundhir, Sachin, Sønderby, C. K., Winther, Ole, Rapin, N. & Porse, Bo Torben, 4 Jan 2016, In: Nucleic Acids Research. 44, D1, p. D917-24 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Analysis of telomerase target gene expression effects from murine models in patient cohorts by homology translation and random survival forest modeling

    Bagger, F. O., Bruedigam, C. & Lane, S. W., 2016, In: Genomics Data. 7, p. 275-280 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    An update on principles of m6A targeting

    Bai, B., 2022, In: Trends in Plant Science. 27, 3, p. 224-226 3 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Bending during seedling emergence: Mechanochemical insight

    Bai, B., 2021, In: Trends in Plant Science. 26, 9, p. 879-881 3 p.

    Research output: Contribution to journal › Letter › Research › peer-review

  25. Published

    Shared activity patterns arising at genetic susceptibility loci reveal underlying genomic and cellular architecture of human disease

    Baillie, J. K., Bretherick, A., Haley, C. S., Clohisey, S., Gray, A., Neyton, L. P. A., Barrett, J., Stahl, E. A., Tenesa, A., Andersson, R., Brown, J. B., Faulkner, G. J., Lizio, M., Schaefer, U., Daub, C., Itoh, M., Kondo, N., Lassmann, T., Kawai, J., Mole, D. & 14 others, Bajic, V. B., Heutink, P., Rehli, M., Kawaji, H., Sandelin, Albin Gustav, Suzuki, H., Satsangi, J., Wells, C. A., Hacohen, N., Freeman, T. C., Hayashizaki, Y., Carninci, P., Forrest, A. R. R. & Hume, D. A., 2018, In: PLoS Computational Biology. 14, 3, 24 p., e1005934.

    Research output: Contribution to journal › Journal article › Research › peer-review

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