Computational and RNA Biology

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  1. 2006
  2. Published

    Diverse bacterial genomes encode an operon of two genes, one of which is a unusual class-I release factor that potentially recognizes atypical mRNA signals other than normal stop codons

    Baranov, P., Vestergaard, Bente, Hamelryck, Thomas Wim, Gesteland, Nyborg, J. & Atking, J., 2006, In: Biology Direct. 13, p. 1-28 28 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Graphical models and directional statistics capture protein structure

    Boomsma, Wouter, Kent, J. T., Mardia, K. V., Taylor, C. C. & Hamelryck, Thomas Wim, 2006, Interdisciplinary Statistics and Bioinformatics. Barber, S., Baxter, P. D., Mardia, K. V. & Walls, R. E. (eds.). Leeds University Press, p. 91-94 4 p.

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  4. Published

    Identification of physicochemical selective pressure on protein encoding nucleotide sequences

    Wong, W. S. W., Sainudiin, R. & Nielsen, Rasmus, 2006, In: BMC Bioinformatics. 7, 10 p., 148.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Interactions between Barley a-Amylases, Substrates, Inhibitors and Regulatory Proteins

    Hachem, M. A., Bozonnet, S., Willemoës, Martin, Bønsager, B. C., Nielsen, M. M., Fukuda, K., Kramhøft, B., Maeda, K., Sigurskjold, B. W., Hägglund, P., Finnie, C., Mori, H., Robert, X., Jensen, M. H., Tranier, S., Aghajari, N., Haser, R. & Svensson, B., 2006, In: Journal of Applied Glycoscience. 53, 2, p. 163-169

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Molecular contacts for chlorosome envelope proteins revealed by cross-linking studies with chlorosomes from Chlorobium tepidum

    Li, H., Frigaard, Niels-Ulrik & Bryant, D. A., 2006, In: Biochemistry. 45, 30, p. 9095-9103 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Niels Bohr – er det ikke noget med nogen antomer? Personer og kanoner i naturvidenskaben.

    Vogel, U. B. & Willemoës, Martin, 2006, In: Biozoom. 1

    Research output: Contribution to journal › Comment/debate › Research

  8. Published

    Prokaryotic photosynthesis and phototrophy illuminated

    Bryant, D. A. & Frigaard, Niels-Ulrik, 2006, In: Trends in Microbiology. 14, 11, p. 488-496 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Protein structure prediction using tabu search and half-sphere exposure measure

    Paluszewski, M., Hamelryck, Thomas Wim & Winter, Pawel, 2006.

    Research output: Contribution to conference › Poster › Research

  10. Published

    Proteorhodopsin lateral gene transfer between marine planktonic Bacteria and Archaea

    Frigaard, Niels-Ulrik, Martinez, A., Mincer, T. J. & DeLong, E. F., 2006, In: Nature. 439, 7078, p. 847-850 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Reconstructing protein structure from solvent exposure using tabu search

    Paluszewski, M., Hamelryck, Thomas Wim & Winter, Pawel, 2006, In: Algorithms for Molecular Biology. 1, p. 14

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Variants in the 5' region of the neuropeptide Y receptor Y2 gene (NPY2R) are associated with obesity in 5,971 white subjects

    Torekov, Signe Sørensen, Larsen, L. H., Andersen, G., Albrechtsen, Anders, Glümer, C., Borch-Johnsen, K., Jørgensen, Tina, Hansen, Teis Schjals & Pedersen, Oluf Borbye, 2006, In: Diabetologia. 49, 11, p. 2653-8 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. 2007
  14. Published

    Alle bakterier deler gener ved horisontal overførsel

    Frigaard, Niels-Ulrik, 2007, In: Dansk Kemi. 88, 5, p. 28-31 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    A code for transcription initiation in mammalian genomes

    Frith, M. C., Valen, E. D., Krogh, Anders, Hayashizaki, Y., Carninci, P. & Sandelin, Albin Gustav, 2007, In: Genome Research. 18, 1, p. 1-12 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Advantages of combined transmembrane topology and signal peptide prediction--the Phobius web server.

    Käll, L., Krogh, Anders & Sonnhammer, E. L. L., 2007, In: Nucleic Acids Research. 35, Web Server issue, p. W429-32

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    An evolutionary method for learning HMM structure: prediction of protein secondary structure.

    Won, K., Hamelryck, Thomas Wim, Prügel-Bennett, A. & Krogh, Anders, 2007, In: BMC Bioinformatics. 8, p. 357

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Bacteriochlorophyllide c C-82 and C-121 methyltransferases are essential for adaptation to low light in Chlorobaculum tepidum

    Gomez Maqueo Chew, A., Frigaard, Niels-Ulrik & Bryant, D. A., 2007, In: Journal of Bacteriology. 189, 17, p. 6176-6184 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Correlation between mechanical strength of messenger RNA pseudoknots and ribosomal frameshifting.

    Hansen, T. M., Reihani, S. N. S., Oddershede, L. B. & Sørensen, Michael Askvad, 2007, In: Proceedings of the National Academy of Science of the United States of America. 104, 14, p. 5830-5 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Forskningsbaseret undervisning- og hva' så!

    Willemoës, Martin & Vogel, U. B., 2007, In: Biozoom. 3

    Research output: Contribution to journal › Comment/debate › Research

  21. Published

    Genetic analysis of the estrogen-related receptor alpha and studies of association with obesity and type 2 diabetes

    Larsen, L. H., Rose, C. S., Sparsø, T., Overgaard, J., Torekov, Signe Sørensen, Grarup, Niels, Jensen, Dan Funck, Albrechtsen, Anders, Andersen, G., Ek, J., Glümer, C., Borch-Johnsen, K., Jørgensen, Tina, Hansen, Teis Schjals & Pedersen, Oluf Borbye, 2007, In: International Journal of Obesity. 31, 2, p. 365-70 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Intragenomic matching reveals a huge potential for miRNA-mediated regulation in plants.

    Lindow, M., Jacobsen, A., Nygaard, S., Mang, Y. & Krogh, Anders, 2007, In: PLoS Computational Biology. 3, 11, p. e238

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    MASTR: multiple alignment and structure prediction of non-coding RNAs using simulated annealing.

    Lindgreen, S., Gardner, P. P. & Krogh, Anders, 2007, In: Bioinformatics. 23, 24, p. 3304-11 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Mechanism of flavin reduction in the class 1A dihydroorotate dehydrogenase from Lactococcus lactis.

    Fagan, R. L., Jensen, K. F., Björnberg, O. & Palfey, B. A., 2007, In: Biochemistry. 46, 13, p. 4028-36 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Mutational analysis of the nucleotide binding site of Escherichia coli dCTP deaminase

    Thymark, M., Johansson, E., Larsen, Sine & Willemoës, Martin, 2007, In: Archives of Biochemistry and Biophysics. 470, 1, p. 20-6 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    Prediction of Structurally-Determined Coiled-Coil Domains with Hidden Markov Models

    Fariselli, P., Molinini, D., Casadio, R. & Krogh, Anders, 2007, Bioinformatics Research and Development: First International Conference, BIRD 2007 Proceedings. Hochreiter, S. & Wagner, R. (eds.). Springer, p. 292-302 11 p. (Lecture Notes in Bioinformatics, Vol. 4414).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  27. Published

    Pseudouridylation of helix 69 of 23S rRNA is necessary for an effective translation termination.

    Ejby, M., Sørensen, Michael Askvad & Pedersen, Steen, 2007, In: Proceedings of the National Academy of Science of the United States of America. 104, 49, p. 19410-5 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

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