- Published
vcfpp: a C++ API for rapid processing of the variant call format
Li, Z., 2024, In: Bioinformatics. 40, 2, 4 p., btae049.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
spliceR: an R package for classification of alternative splicing and prediction of coding potential from RNA-seq data
Vitting-Seerup, K., Porse, Bo Torben, Sandelin, Albin Gustav & Waage, J., 2014, In: B M C Bioinformatics. 15, p. 1-7 7 p., 81.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
scVAE: variational auto-encoders for single-cell gene expression data
Grønbech, Christopher Heje, Vording, M. F., Timshel, P., Sønderby, C. K., Pers, Tune H & Winther, Ole, 2020, In: Bioinformatics. 36, 16, p. 4415-4422 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
netDx: Software for building interpretable patient classifiers by multi-'omic data integration using patient similarity networks [version 2; peer review: 2 approved]
Pai, S., Weber, P., Isserlin, R., Kaka, H., Hui, S., Shah, M. A., Giudice, L., Giugno, R., Nøhr, A. K., Baumbach, J. & Bader, G. D., 2021, In: F1000Research. 9, 42 p., 1239.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
microRNA-146a inhibits G protein-coupled receptor-mediated activation of NF-κB by targeting CARD10 and COPS8 in gastric cancer
Crone, S. G., Jacobsen, A., Federspiel, B., Bardram, L., Krogh, Anders, Lund, Anders H. & Friis-Hansen, Lennart Jan, 2012, In: Molecular Cancer. 11, 71, p. 71 31 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
microRNA-143 down-regulates Hexokinase 2 in colon cancer cells
Gregersen, Lea Haarup, Jacobsen, A., Frankel, Lisa, Wen, J., Krogh, Anders & Lund, Anders H., 2012, In: B M C Cancer. 12, 232, 23 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
microRNA-101 is a potent inhibitor of autophagy
Frankel, Lisa, Wen, J., Lees, M., Høyer-Hansen, M., Farkas, T., Krogh, Anders, Jäättelä, M. & Lund, Anders H., 2011, In: E M B O Journal. 30, p. 4628-4641 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
miRMaid: a unified programming interface for microRNA data resources
Jacobsen, A., Krogh, Anders, Kauppinen, S. & Lindow, M., 2010, In: BMC Bioinformatics. 11, Suppl 1, p. 29Research output: Contribution to journal › Journal article › Research › peer-review
- Published
miR-509-3p is clinically significant and strongly attenuates cellular migration and multi-cellular spheroids in ovarian cancer
Pan, Y., Robertson, G., Pedersen, L., Lim, E., Hernandez-Herrera, A., Rowat, A. C., Patil, S. L., Chan, C. K., Wen, Y., Zhang, X., Basu-Roy, U., Mansukhani, A., Chu, A., Sipahimalani, P., Bowlby, R., Brooks, D., Thiessen, N., Coarfa, C., Ma, Y., Moore, R. A. & 8 others, , 2016, In: OncoTarget. 7, 18, p. 25930-25948 19 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
miR-449 inhibits cell proliferation and is down-regulated in gastric cancer
Bou Kheir, T., Futoma-Kazmierczak, E., Jacobsen, A., Krogh, Anders, Bardram, L., Hother, C., Grønbæk, Kirsten, Federspiel, B., Lund, Anders H. & Friis-Hansen, Lennart Jan, 2011, In: Molecular Cancer. 10, p. 1-12 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
maxAlike: maximum likelihood-based sequence reconstruction with application to improved primer design for unknown sequences
Menzel, K. P., Stadler, P. F. & Gorodkin, Jan, 2011, In: Bioinformatics. 27, 3, p. 317-325 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
mTOR complex 2 phosphorylates IMP1 cotranslationally to promote IGF2 production and the proliferation of mouse embryonic fibroblasts.
Dai, N., Christiansen, Jan, Nielsen, F. & Avruch, J., 2013, In: Genes & Development. 27, 3, p. 301-312 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
mRNA pseudoknot structures can act as ribosomal roadblocks
Hansen, J. T., Oddershede, L. B. & Sørensen, Michael Askvad, 2012, In: Nucleic Acids Research. 40, 1, p. 303-313 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
mRNA decay of most arabidopsis miRNA targets requires slicer activity of AGO1
Arribas Hernandez, Laura, Kielpinski, L. J. & Brodersen, Peter, 2016, In: Plant Physiology. 171, 4, p. 2620-2632 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
m6A modification of U6 snRNA modulates usage of two major classes of pre-mRNA 5' splice site
Parker, M. T., Soanes, B. K., Kusakina, J., Larrieu, A., Knop, K., Joy, N., Breidenbach, F., Sherwood, Anna, Barton, G. J., Fica, S. M., Davies, B. H. & Simpson, G. G., 2022, In: eLife. 11, 34 p., 78808.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
hyperTRIBER: a flexible R package for the analysis of differential RNA editing
Rennie, Sarah, Magnusson, D. H. & Andersson, Robin, 2021, 12 p.Research output: Working paper › Preprint
- Published
fastNGSadmix: admixture proportions and principal component analysis of a single NGS sample
Jørsboe, E., Hanghøj, Kristian Ebbesen & Albrechtsen, Anders, 1 Oct 2017, In: Bioinformatics. 33, 19, p. 3148-3150 3 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
cWords - systematic microRNA regulatory motif discovery from mRNA expression data
Rasmussen, S. H., Jacobsen, A. & Krogh, Anders, 2013, In: Silence. 4, 2, 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
YeastFab: The design and construction of standard biological parts for metabolic engineering in Saccharomyces cerevisiae
Guo, Y., Dong, J., Zhou, T., Auxillos, Jamie Yam, Li, T., Zhang, W., Wang, L., Shen, Y., Luo, Y., Zheng, Y., Lin, J., Chen, G. Q., Wu, Q., Cai, Y. & Dai, J., 27 Apr 2015, In: Nucleic Acids Research. 43, 13, p. e88Research output: Contribution to journal › Journal article › Research › peer-review
- Published
YeastFab: High-Throughput Genetic Parts Construction, Measurement, and Pathway Engineering in Yeast
Garcia-Ruiz, E., Auxillos, Jamie Yam, Li, T., Dai, J. & Cai, Y., 1 Jan 2018, Methods in Enzymology. Scrutton, N. (ed.). Academic Press, p. 277-306 30 p. (Methods in Enzymology, Vol. 608).Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
X-ray scattering and electron cryomicroscopy study on the effect of carotenoid biosynthesis to the structure of Chlorobium tepidum chlorosomes
Ikonen, T. P., Li, H., Psencík, J., Laurinmäki, P. A., Butcher, S. J., Frigaard, Niels-Ulrik, Serimaa, R. E., Bryant, D. A. & Tuma, R., 2007, In: Biophysical Journal. 93, 2, p. 620-628 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Whole-genome sequencing of cultivated and wild peppers provides insights into Capsicum domestication and specialization
Qin, C., Yu, C., Shen, Y., Fang, X., Chen, L., Min, J., Cheng, J., Zhao, S., Xu, M., Luo, Y., Yang, Y., Wu, Z., Mao, L., Wu, H., Ling-Hu, C., Zhou, H., Lin, H., Gonzalez-Morales, S., Trejo-Saavedra, D. L., Tian, H. & 53 others, , 2014, In: Proceedings of the National Academy of Sciences of the United States of America. 111, 14, p. 5135-5140 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Whole-exome sequencing of 2,000 Danish individuals and the role of rare coding variants in type 2 diabetes
Lohmueller, K. E., Sparsø, T. H., Li, Q., Galijatovic, E. A. A., Korneliussen, T. S., Albrechtsen, A., Banasik, K., Grarup, N., Hallgrimsdottir, I., Kiil, K., Oskari Kilpeläinen, T., Krarup, N. T., Pers, T. H., Sanchez, G., Hu, Y., DeGiorgio, M., Jørgensen, T., Sandbæk, A., Lauritzen, T., Brunak, S. & 6 others, , 5 Dec 2013, In: American Journal of Human Genetics. 93, 6, p. 1072-1086 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Whole Genome Sequencing in the Evaluation of Fetal Structural Anomalies: A Parallel Test with Chromosomal Microarray Plus Whole Exome Sequencing
Zhou, J., Yang, Z., Sun, J., Liu, L., Zhou, X., Liu, F., Xing, Y., Cui, S., Xiong, S., Liu, X., Yang, Y., Wei, X., Zou, G., Wang, Z., Wei, X., Wang, Y., Zhang, Y., Yan, S., Wu, F., Zeng, F. & 4 others, , 2021, In: Genes. 12, 3, 14 p., 376.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
What are artificial neural networks?
Krogh, Anders, 2008, In: Nature Biotechnology. 26, 2, p. 195-7 2 p.Research output: Contribution to journal › Journal article › Research › peer-review
Most downloads
-
6191
downloads
Reconstructing genome evolution in historic samples of the Irish potato famine pathogen
Research output: Contribution to journal › Journal article › Research › peer-review
Published -
5490
downloads
Natural selection affects multiple aspects of genetic variation at putatively peutral sites across the human genome
Research output: Contribution to journal › Journal article › Research › peer-review
Published -
5253
downloads
True single-molecule DNA sequencing of a pleistocene horse bone
Research output: Contribution to journal › Journal article › Research › peer-review
Published
Latest publications
Characterizing glucokinase variant mechanisms using a multiplexed abundance assay
Research output: Contribution to journal › Journal article › Research › peer-review
Genetic diversity of lion populations in Kenya: Evaluating past management practices and recommendations for future conservation actions
Research output: Contribution to journal › Journal article › Research › peer-review
MYC activity at enhancers drives prognostic transcriptional programs through an epigenetic switch
Research output: Contribution to journal › Journal article › Research › peer-review