- 2013
- Published
The Prognostic, Diagnostic, and Therapeutic Potential of Tumor Antigens
Olsen, L. R., 2013, Department of Biology, Faculty of Science, University of Copenhagen. 271 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
The confounding effect of population structure on bayesian skyline plot inferences of demographic history
Heller, Rasmus, Chikhi, L. & Siegismund, Hans Redlef, 2013, In: P L o S One. 8, 5, p. 1-10 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Understanding geographic origins and history of admixture among chimpanzees in European zoos, with implications for future breeding programmes
Hvilsom, C., Frandsen, P., Børsting, Claus, Carlsen, F., Sallé, B., Simonsen, Bo Thisted & Siegismund, Hans Redlef, 2013, In: Heredity. 110, 6, p. 586-593 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
cWords - systematic microRNA regulatory motif discovery from mRNA expression data
Rasmussen, S. H., Jacobsen, A. & Krogh, Anders, 2013, In: Silence. 4, 2, 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
mTOR complex 2 phosphorylates IMP1 cotranslationally to promote IGF2 production and the proliferation of mouse embryonic fibroblasts.
Dai, N., Christiansen, Jan, Nielsen, F. & Avruch, J., 2013, In: Genes & Development. 27, 3, p. 301-312 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2012
- Published
Current and emerging approaches to define intestinal epithelium-specific transcriptional networks
Olsen, A. K., Boyd, M., Danielsen, E. T. & Troelsen, J. T., Feb 2012, In: American Journal of Physiology: Gastrointestinal and Liver Physiology. 302, 3, p. G277-86Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A strand specific high resolution normalization method for chip-sequencing data employing multiple experimental control measurements.
Enroth, S., Andersson, C., Andersson, Robin, Wadelius, C., Gustafsson, M. & Komorowski, J., 2012, In: Algorithms for Molecular Biology. 7, 1, p. 2 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
AdapterRemoval: easy cleaning of next generation sequencing reads
Lindgreen, S., 2012, In: BMC Research Notes. 5, 337, 7 p., 337.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
An Overview of Bayesian Inference and Graphical Models
Hamelryck, Thomas Wim, 2012, Bayesian Methods in Structural Bioinformatics. Hamelryck, T., Mardia, K. & Ferkinghoff-Borg, J. (eds.). Springer, p. 3-48 46 p. (Statistics for Biology and Health, Springer).Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
An efficient null model for conformational fluctuations in proteins
Harder, T. P., Bottaro, S., Boomsma, Wouter, Olsson, S., Ferkinghoff-Borg, J. & Hamelryck, Thomas Wim, 2012, In: Structure. 20, 6, p. 1028-1039 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
An effort to use human-based exome capture methods to analyze chimpanzee and macaque exomes
Jin, X., He, M., Ferguson, B., Meng, Y., Ouyang, L., Ren, J., Mailund, T., Sun, F., Sun, L., Shen, J., Zhuo, M., Song, L., Wang, J., Ling, F., Zhu, Y., Hvilsom, C., Siegismund, H. R., Liu, X., Gong, Z., Ji, F. & 15 others, , 2012, In: P L o S One. 7, 7, 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Association testing for next-generation sequencing data using score statistics
Skotte, L., Korneliussen, Thorfinn Sand & Albrechtsen, Anders, 2012, In: Genetic Epidemiology. 36, 5, p. 430-437 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Bayesian methods in structural bioinformatics
Hamelryck, Thomas Wim (ed.), Mardia, K. (ed.) & Ferkinghoff-Borg, J. (ed.), 2012, Springer. 377 p. (Statistics for Biology and Health).Research output: Book/Report › Book › Research › peer-review
- Published
Biological systems on a small scale
Pedersen, L., 2012, Center for Ice & Climate: Faculty of Science, University of Copenhagen. 184 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
Cape buffalo mitogenomics reveals a holocene shift in the African human-megafauna dynamics
Heller, Rasmus, Brüniche-Olsen, A. & Siegismund, Hans Redlef, 2012, In: Molecular Ecology. 21, 16, p. 3947-3959 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Comparative phylogeography of African savannah ungulates
Lorenzen, Eline, Heller, Rasmus & Siegismund, Hans Redlef, 2012, In: Molecular Ecology. 21, 15, p. 3656-3670 15 p.Research output: Contribution to journal › Review › Research › peer-review
- Published
Computational cancer biology: from carcinogenesis to metastasis
Kaczkowski, B., 2012, Department of Biology, Faculty of Science, University of Copenhagen. 125 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
Cross-species ChIP-seq studies provide insights into regulatory strategies of PPAR¿ in adipocytes
Schmidt, S. F., Jørgensen, M., Sandelin, Albin Gustav & Mandrup, S., 2012, In: Transcription. 3, 1, p. 19-24 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
DGCR8 HITS-CLIP reveals novel functions for the microprocessor
Macias, S., Plass, M., Stajuda, A., Michlewski, G., Eyras, E. & Cáceres, J. F., 2012, In: Nature Structural and Molecular Biology. 19, 8Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Down-regulation of microRNAs controlling tumourigenic factors in follicular thyroid carcinoma
Rossing, M., Helweg-Larsen, R. B., Henao Giraldo, R., Winther, Ole, Vikeså, J., Niazi, O., Godballe, C., Krogdahl, A., Glud, M., Sørensen, C. H., Kiss, K., Bennedbæk, F. N. & Nielsen, Finn Cilius, 2012, In: Journal of Molecular Endocrinology. 48, 1, p. 11-23 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Extensive X-linked adaptive evolution in central chimpanzees
Hvilsom, C., Qian, Y., Bataillon, T., Li, Y., Mailund, T., Sallé, B., Carlsen, F., Li, R., Zheng, H., Jiang, T., Jiang, H., Jin, X., Terkelsen, K. M., Hobolth, A., Siegismund, Hans Redlef, Wang, J. & Schierup, M. H., 2012, In: Proceedings of the National Academy of Sciences USA (PNAS). 109, 6, p. 2054-2059 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Fast large-scale clustering of protein structures using Gauss integrals
Harder, T. P., Borg, M., Boomsma, Wouter, Røgen, P. & Hamelryck, Thomas Wim, 2012, In: Bioinformatics. 28, 4, p. 510-515 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Fitness consequences of nest infiltration by the mutualist-exploiter Megalomyrmex adamsae
Adams, R. M. M., Shah, K., Antonov, L. D. & Mueller, U. G., 2012, In: Ecological Entomology. 37, 6, p. 453-462 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
GMD: measuring the distance between histograms with applications on high-throughput sequencing reads
Zhao, X. & Sandelin, Albin Gustav, 2012, In: Bioinformatics. 28, 8, p. 1164-1165 2 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genetic diversity in the desert warthog (Phacochoerus aethiopicus delameri) population of eastern Africa
Muwanika, V. B., Kock, R., Masembe, C. & Siegismund, Hans Redlef, 2012, In: South African Journal of Wildlife Research. 42, 1, p. 54-59 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
HemaExplorer: a Web server for easy and fast visualization of gene expression in normal and malignant hematopoiesis
Bagger, F. O., Rapin, N. P. J., Theilgaard-Mønch, Kim, Kaczkowski, B., Jendholm, L. J., Winther, O. & Porse, Bo Torben, 2012, In: Blood. 119, 26, p. 6394-6395 2 p.Research output: Contribution to journal › Comment/debate › Research
- Published
Improving ancient DNA read mapping against modern reference genomes
Schubert, Mikkel, Ginolhac, A., Lindgreen, S., Thompson, J. F., Al-Rasheid, K. A. S., Willerslev, Eske, Krogh, Anders & Orlando, L. A. A., 2012, In: BMC Genomics. 13, 15 p., 178.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Integrative analyses reveal novel strategies in HPV11,-16 and -45 early infection
Kaczkowski, B., Rossing, M., Andersen, D. K., Dreher, A., Morevati, M., Visser, M. A., Winther, Ole, Nielsen, Finn Cilius & Norrild, B., 2012, In: Scientific Reports. 2, p. 515Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Interaction of antidepressants with the serotonin and norepinephrine transporters: mutational studies of the S1 substrate binding pocket
Sørensen, L., Andersen, J., Thomsen, M., Hansen, S. M. R., Zhao, X., Sandelin, Albin Gustav, Strømgaard, Kristian & Kristensen, Anders Skov, 2012, In: The Journal of Biological Chemistry. 287, 52, p. 43694-43707 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Interaction of antidepressants with the serotonin and norepinephrine transporters: mutational studies of the S1 substrate binding pocket
Sørensen, L., Andersen, J., Thomsen, M., Hansen, S. M. R., Zhao, X., Sandelin, Albin Gustav, Strømgaard, Kristian & Kristensen, Anders Skov, 2012, In: Journal of Biological Chemistry. 287, p. 43694-43707 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Mammalian tissues defective in nonsense-mediated mRNA decay display highly aberrant splicing patterns
Weischenfeldt, Joachim Lütken, Waage, J. E., Tian, G., Zhao, J., Damgaard, I., Jakobsen, J. S., Kristiansen, Karsten, Krogh, Anders, Wang, J. & Porse, Bo Torben, 2012, In: Genome Biology (Online Edition). 13, 5, 19 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Mediator regulates non-coding RNA transcription at fission yeast centromeres
Thorsen, M., Hansen, H., Venturi, M., Holmberg, Steen & Thon, Genevieve, 2012, In: Epigenetics & Chromatin. 5, p. 1-10 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Metazoan promoters: emerging characteristics and insights into transcriptional regulation
Lenhard, B., Sandelin, Albin Gustav & Carninci, P., 2012, In: Nature Reviews. Genetics. 13, 4, p. 233-245 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
MicroRNAs and Their Antagonists as Novel Therapeutics
Vinther, Jeppe, Rukov, J. & Shomron, N., 2012, From Nucleic Acids Sequences to Molecular Medicine. Erdmann, V. A. & Barciszewski, J. (eds.). Springer Publishing Company, p. 503-523 21 p. (RNA Technologies).Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
Mixtures of concentrated multivariate sine distributions with applications to bioinformatics
Mardia, K. V., Kent, J. T., Zhang, Z., Taylor, C. C. & Hamelryck, Thomas Wim, 2012, In: Journal of Applied Statistics. 39, 11, p. 2475-2492 18 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
On gene regulation in eukaryotes: computational approaches to decipher transcriptional regulation at genetic and epigenetic level
Zhao, X., 2012, Department of Biology, Faculty of Science, University of Copenhagen. 170 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
On the Physical Relevance and Statistical Interpretation of Knowledge-Based Potentials
Borg, M., Hamelryck, Thomas Wim & Ferkinghoff-Borg, J., 2012, Bayesian Methods in Structural Bioinformatics. Hamelryck, T., Mardia, K. & Ferkinghoff-Borg, J. (eds.). Springer Publishing Company, p. 97-124 28 p. (Statistics for Biology and Health, Springer).Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
Predictive active set selection methods for Gaussian processes
Henao, R. & Winther, Ole, 2012, In: Neurocomputing. 80, p. 10-18 9 p.Research output: Contribution to journal › Conference article › Research › peer-review
- Published
Prey diversity is affected by climate and differs between age classes in the Red-backed Shrike (Lanius collurio)
Pedersen, L., Geertsma, M. & Tøttrup, Anders P., 2012, In: Ornis Fennica. 89, 2, p. 99-108 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Probabilistic models of local biomolecular structure and their applications
Boomsma, Wouter, Frellsen, J. & Hamelryck, Thomas Wim, 2012, Bayesian methods in structural bioinformatics. Hamelryck, T., Mardia, K. & Ferkinghoff-Borg, J. (eds.). Springer, p. 233-254 22 p. (Statistics for Biology and Health, Springer).Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
RILogo: visualising RNA-RNA interactions
Menzel, K. P., Seemann, Ernst Stefan & Gorodkin, Jan, 2012, In: Bioinformatics. 28, 19, p. 2523-2526 4 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Resequencing 50 accessions of cultivated and wild rice yields markers for identifying agronomically important genes
Xu, X., Liu, X., Ge, S., Jensen, J. D., Hu, F., Li, X., Dong, Y., Gutenkunst, R. N., Fang, L., Huang, L., Li, J., He, W., Zhang, G., Zheng, X., Zhang, F., Li, Y., Yu, C., Kristiansen, K., Zhang, X., Wang, J. & 5 others, , 2012, In: Nature Biotechnology. 30, 1, p. 105-111 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
SNP calling, genotype calling, and sample allele frequency estimation from new-generation sequencing data
Nielsen, Rasmus, Korneliussen, Thorfinn Sand, Albrechtsen, Anders, Li, Y. & Wang, J., 2012, In: PLoS ONE. 7, 7, 11 p., e37558.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Serotype identification and VP1 coding sequence analysis of foot-and-mouth disease viruses from outbreaks in Eastern and Northern Uganda in 2008/9
Kasambula, L., Belsham, G., Siegismund, Hans Redlef, Muwanika, V. B., Ademun-Okurut, A. R. & Masembe, C., 2012, In: Transboundary and Emerging Diseases. 59, 4, p. 323-330 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Significance of calcium binding, tyrosine phosphorylation, and lysine trimethylation for the essential function of calmodulin in vertebrate cells analyzed in a novel gene replacement system
Panina, S., Stephan, A., la Cour, J. M., Jacobsen, K., Kallerup, L. K., Bumbuleviciute, R., Knudsen, K. V. K., Sanchez-Gonzalez, P., Villalobo, A., Olesen, U. H. & Berchtold, Martin Werner, 2012, In: Journal of Biological Chemistry. 287, 22, p. 18173-18181 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Statistics of bivariate von mises distributions
Mardia, K. V. & Frellsen, J., 2012, Bayesian methods in structural bioinformatics. Hamelryck, T., Mardia, K. & Ferkinghoff-Borg, J. (eds.). Springer, p. 159-178 20 p. (Statistics for Biology and Health).Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
Subtle Monte Carlo updates in dense molecular systems
Bottaro, S., Boomsma, Wouter, Johansson, Kristoffer Enøe, Andreetta, C., Hamelryck, Thomas Wim & Ferkinghoff-Borg, J., 2012, In: Journal of Chemical Theory and Computation. 8, 2, p. 695-702 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis
Pauli, A., Valen, E., Lin, M. F., Garber, M., Vastenhouw, N. L., Levin, J. Z., Fan, L., Sandelin, Albin Gustav, Rinn, J. L., Regev, A. & Schier, A. F., 2012, In: Genome Research. 22, p. 577-591 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The rectal cancer microRNAome - microRNA expression in rectal cancer and matched normal mucosa
Gaedcke, J., Grade, M., Camps, J., Søkilde, R., Kaczkowski, B., Schetter, A. J., Difilippantonio, M. J., Harris, C. C., Ghadimi, B. M., Møller, S., Beissbarth, T., Ried, T. & Litman, Thomas, 2012, In: Clinical Cancer Research. 18, 18, p. 4919-4930 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The role of miRNAs in human papilloma virus (HPV)-associated cancers: bridging between HPV-related head and neck cancer and cervical cancer
Lajer, C. B., Garnæs, E., Friis-Hansen, Lennart Jan, Norrild, B., Therkildsen, M. H., Glud, M., Rossing, M., Lajer, H., Svane, D., Skotte, L., Specht, Lena, von Buchwald, Christian & Nielsen, Finn Cilius, 2012, In: B J C. 106, p. 1526-1534 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Reconstructing genome evolution in historic samples of the Irish potato famine pathogen
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Natural selection affects multiple aspects of genetic variation at putatively peutral sites across the human genome
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5254
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True single-molecule DNA sequencing of a pleistocene horse bone
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Characterizing glucokinase variant mechanisms using a multiplexed abundance assay
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Genetic diversity of lion populations in Kenya: Evaluating past management practices and recommendations for future conservation actions
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MYC activity at enhancers drives prognostic transcriptional programs through an epigenetic switch
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