Computational and RNA Biology

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  1. 2024
  2. Published

    Efficient statistical and computational methods for large scale sequencing data

    Li, Zilong, 2024, Department of Biology, Faculty of Science, University of Copenhagen. 149 p.

    Research output: Book/Report › Doctoral thesis › Research

  3. Published

    Predicting peptide–MHC stability and immunogenicity with deep learning

    Prachar, Marek, 2024, Department of Biology, Faculty of Science, University of Copenhagen. 258 p.

    Research output: Book/Report › Ph.D. thesis › Research

  4. 2023
  5. Published

    Application of whole genome sequencing data in population genetics: identifying sex-linked scaffolds and inferring admixture in a unique cattle population

    Nursyifa, Casia, 2023, Department of Biology, Faculty of Science, University of Copenhagen. 225 p.

    Research output: Book/Report › Ph.D. thesis › Research

  6. Published

    Between inflammation, homeostasis and adaptation: Systemic and tissue-specific responses to maternal immune activation

    Hansen, Signe Schmidt Kjølner, 2023, Department of Biology, Faculty of Science, University of Copenhagen. 177 p.

    Research output: Book/Report › Ph.D. thesis › Research

  7. Published

    Characterization of industrially-produced Lacticaseibacillus rhamnosus GG and Lactobacillus acidophilus LA-5: Analysis of genomic integrity, transcriptome and phenotypes

    Strickertsson, Marianne Stage, 2023, Department of Biology, Faculty of Science, University of Copenhagen. 206 p.

    Research output: Book/Report › Ph.D. thesis › Research

  8. Published

    Deciphering regulatory mechanisms underlying gene co-activity

    van Duin, Lucas, 2023, Department of Biology, Faculty of Science, University of Copenhagen. 131 p.

    Research output: Book/Report › Ph.D. thesis › Research

  9. Published

    Exploring antidepressant treatment response using biological and clinical measurements

    Nøhr, A. K., 2023, Department of Biology, Faculty of Science, University of Copenhagen. 125 p.

    Research output: Book/Report › Ph.D. thesis › Research

  10. Published

    Functions of m6A-YTH modules in plants: Lessons from high-throughput sequencing analyses

    Porcelli, C., 2023, Department of Biology, Faculty of Science, University of Copenhagen. 178 p.

    Research output: Book/Report › Ph.D. thesis › Research

  11. Published

    On the origin of regulatory elements: Computational analyses of transposable elements in pluripotency and development

    Bakoulis, Stylianos, 2023, Department of Biology, Faculty of Science, University of Copenhagen. 135 p.

    Research output: Book/Report › Ph.D. thesis › Research

  12. Published

    Probabilistic modelling in genomics

    Rasmussen, Malthe Sebro, 2023, Department of Biology, Faculty of Science, University of Copenhagen. 158 p.

    Research output: Book/Report › Ph.D. thesis › Research

  13. Published

    Unraveling the genetic basis of neurological diseases and thalassemia: the clinical utility of high throughput sequencing

    ZHANG, W., 2023, Department of Biology, Faculty of Science, University of Copenhagen. 117 p.

    Research output: Book/Report › Ph.D. thesis › Research

  14. 2022
  15. Published

    Clinical application of high-throughput sequencing technology in prenatal screening and diagnosis of birth defects

    ZENG, F., 2022, Department of Biology, Faculty of Science, University of Copenhagen. 118 p.

    Research output: Book/Report › Ph.D. thesis › Research

  16. Published

    Genomic stability and phenotypic characteristics of industrially-produced Lacticaseibacillus rhamnosus GG

    Strickertsson, Marianne Stage, 2022, Department of Biology, Faculty of Science, University of Copenhagen. 112 p.

    Research output: Book/Report › Ph.D. thesis › Research

  17. Published

    Mechanisms Underlying siRNA Amplification in Arabidopsis thaliana

    Vigh, Maria Louisa, 2022, Department of Biology, Faculty of Science, University of Copenhagen. 201 p.

    Research output: Book/Report › Ph.D. thesis › Research

  18. Published

    Requirement of a deeply conserved ARGONAUTE phospho-cluster for target- mediated microRNA degradation in plants

    Guo, F., 2022, Department of Biology, Faculty of Science, University of Copenhagen. 118 p.

    Research output: Book/Report › Ph.D. thesis › Research

  19. 2021
  20. Published

    Investigation of the Impact of the RNA Exosome on Cellular Transcriptome and Function

    Wu, M., 2021, Department of Biology, Faculty of Science, University of Copenhagen. 154 p.

    Research output: Book/Report › Ph.D. thesis › Research

  21. 2020
  22. Published

    An RNAi independent antiviral activity of the Arabidopsis thaliana DCL2

    Nielsen, C. P. S., 2020, Department of Biology, Faculty of Science, University of Copenhagen. 104 p.

    Research output: Book/Report › Ph.D. thesis › Research

  23. Published

    Investigation of transcriptional output and regulation in plants using Cap Analysis of Gene Expression (CAGE)

    Thieffry, A., 2020, Department of Biology, Faculty of Science, University of Copenhagen. 128 p.

    Research output: Book/Report › Ph.D. thesis › Research

  24. Published

    Method Development for Next-Generation Sequencing Data in Population Genetics

    Meisner, Jonas, 2020, Department of Biology, Faculty of Science, University of Copenhagen. 154 p.

    Research output: Book/Report › Ph.D. thesis › Research

  25. Published

    The traditional diet and genetic architecture of the Greenlandic Inuit and their cardiovascular effects

    Senftleber, N. K., 2020, Department of Biology, Faculty of Science, University of Copenhagen. 163 p.

    Research output: Book/Report › Ph.D. thesis › Research

  26. 2019
  27. Published

    Bioinformatic Analysis of Breast Tumor Interstitial Fluids: Insights into a Pan-molecular Secretome

    Terkelsen, Thilde Bagger, 2019, Department of Biology, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  28. Published

    Investigating the possible function of DCL2 as a viral RNA sensor in Arabidopsis

    Han, L., 2019, Department of Biology, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  29. Published

    Probabilistic methods for the analysis of genome-wide data for admixed populations including association studies in Greenlandic Inuit

    Jørsboe, E., 2019, Department of Biology, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  30. Published

    Relatedness, admixture and the genetic history of Greenland-European contact

    Waples, R., 2019, Department of Biology, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  31. 2018
  32. Published

    Exploring the central dogma from both ends. Omics integration of Hi-C sequencing and Raman spectroscopic data

    Kumar, V., 2018, Department of Biology, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  33. Published

    Genomic investigations of horse domestication using ancient DNA and a novel statistical method for epigenomic inference from ancient DNA sequencing data

    Hanghøj, Kristian Ebbesen, 2018, Department of Biology, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  34. Published

    Inference and Learning in Deep Generative Models

    Sønderby, C. K., 2018, Department of Biology, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  35. Published

    Organism- and disease-specific atlases of transcription start sites using Cap Analysis of Gene Expression (CAGE)

    Thodberg, Malte, 2018, Department of Biology, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  36. Published

    Regulation and Maintenance of Transcriptional Specificity

    Dalby, M., 2018, Department of Biology, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  37. 2017
  38. Published

    Analysing human genomes at different scales

    Liu, S., 2017, Department of Biology, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  39. Published

    Demographic inferences from large-scale NGS data

    Pedersen, C. T., 2017, Department of Biology, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  40. Published

    Investigating membrane-bound Argonaute functions in Arabidopsis

    Barghetti, A., 2017, Department of Biology, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  41. Published

    Sequence Analysis

    Sønderby, S. K., 2017, Department of Biology, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  42. Published

    Structures and Interactions of Proteins in the Brain: The Interaction Between LRP1 and Aß & Structure and Self-Assembly of Arc

    Nielsen, L. D., 2017, Department of Biology, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  43. 2016
  44. Published

    Computational Investigations of Post-Transcriptional Regulation: The Intricate Dependency of MicroRNA Regulation on RNA-Binding Proteins

    Rasmussen, S. H., 2016, Department of Biology, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  45. Published

    Probabilistic Methods for Processing High-Throughput Sequencing Signals

    Sørensen, L. M., 2016, Department of Biology, Faculty of Science, University of Copenhagen. 173 p.

    Research output: Book/Report › Ph.D. thesis › Research

  46. Published

    Probabilistic Transcriptome Assembly and Variant Graph Genotyping

    Sibbesen, Jonas Andreas, 2016, Department of Biology, Faculty of Science, University of Copenhagen. 119 p.

    Research output: Book/Report › Ph.D. thesis › Research

  47. Published

    Transcriptional diversity and regulation across time and states

    Vitting-Seerup, K., 2016, Department of Biology, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  48. 2015
  49. Published

    Alternative Promoter Usage in Healthy and Inflamed Tissue

    Lilje, B., 2015, Department of Biology, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  50. Published

    Investigation of RNA Structure by High-Throughput SHAPE-Based Probing Methods

    Poulsen, L. D., 2015, Department of Biology, Faculty of Science, University of Copenhagen. 133 p.

    Research output: Book/Report › Ph.D. thesis › Research

  51. Published

    Non-Coding RNAs in Arabidopsis: Discovery of Nuclear ncRNAs from Body Methylated Genes and of miRNA Pathway Inhibition by Conserved, Bacterial Virulence Factor

    van Wonterghem, M., 2015, Department of Biology, Faculty of Science, University of Copenhagen. 109 p.

    Research output: Book/Report › Ph.D. thesis › Research

  52. Published

    Post-Transcriptional Gene Regulation Mediated by Small RNAs and ARGONAUTE1 in Arabidopsis

    Arribas Hernandez, Laura, 2015, Department of Biology, Faculty of Science, University of Copenhagen. 232 p.

    Research output: Book/Report › Ph.D. thesis › Research

  53. Published

    Regulated Proteolysis of Arabidopsis Argonaute1

    Kausika, S. P., 2015, Department of Biology, Faculty of Science, University of Copenhagen. 201 p.

    Research output: Book/Report › Ph.D. thesis › Research

  54. Published

    Statistical Approaches Accomodating Uncertainty in Modern Genomic Data

    Skotte, L., 2015, Department of Biology, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  55. 2014
  56. Published

    Aberrant Gene Expression in Acute Myeloid Leukaemia

    Bagger, F. O., 2014, Department of Biology, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  57. Published

    Computational Approaches to Understand Transcriptional Regulation and Alternative Promoter Usage in Mammals

    Jørgensen, M., 2014, Department of Biology, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  58. Published

    Genome-wide Analysis of Gene Regulation: in fundamental biology and disease

    Chen, Y., 2014, Department of Biology, Faculty of Science, University of Copenhagen. 240 p.

    Research output: Book/Report › Ph.D. thesis › Research

  59. Published

    High-Throughput Sequencing Based Methods of RNA Structure Investigation

    Kielpinski, L. J., 2014, Department of Biology, Faculty of Science, University of Copenhagen. 137 p.

    Research output: Book/Report › Ph.D. thesis › Research

  60. 2013
  61. Published

    A study of bacterial gene regulatory mechanisms: Dynamic features of gene regulatory mechanisms in EscherichEia coli and small RNA post-transcriptional regulation in Vibrio cholerae

    Hansen, S., 2013, Department of Biology, Faculty of Science, University of Copenhagen. 134 p.

    Research output: Book/Report › Ph.D. thesis › Research

  62. Published

    Inference problems in structural biology: protein structures and protein structure ensembles

    Olsson, S., 2013, Department of Biology, Faculty of Science, University of Copenhagen. 138 p.

    Research output: Book/Report › Ph.D. thesis › Research

  63. Published

    Probabilistic Equilibrium Sampling of Protein Structures from SAXS Data and a Coarse Grained Debye Formula

    Andreetta, C., 2013, Department of Biology, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  64. Published

    The Prognostic, Diagnostic, and Therapeutic Potential of Tumor Antigens

    Olsen, L. R., 2013, Department of Biology, Faculty of Science, University of Copenhagen. 271 p.

    Research output: Book/Report › Ph.D. thesis › Research

  65. 2012
  66. Published

    Bayesian methods in structural bioinformatics

    Hamelryck, Thomas Wim (ed.), Mardia, K. (ed.) & Ferkinghoff-Borg, J. (ed.), 2012, Springer. 377 p. (Statistics for Biology and Health).

    Research output: Book/Report › Book › Research › peer-review

  67. Published

    Biological systems on a small scale

    Pedersen, L., 2012, Center for Ice & Climate: Faculty of Science, University of Copenhagen. 184 p.

    Research output: Book/Report › Ph.D. thesis › Research

  68. Published

    Computational cancer biology: from carcinogenesis to metastasis

    Kaczkowski, B., 2012, Department of Biology, Faculty of Science, University of Copenhagen. 125 p.

    Research output: Book/Report › Ph.D. thesis › Research

  69. Published

    On gene regulation in eukaryotes: computational approaches to decipher transcriptional regulation at genetic and epigenetic level

    Zhao, X., 2012, Department of Biology, Faculty of Science, University of Copenhagen. 170 p.

    Research output: Book/Report › Ph.D. thesis › Research

  70. 2011
  71. Published

    Aspects of RNA Regulation: Non-canonical microRNAs Biogenesis, microRNAs in Pharmacogenomics, and the Evolvability of Alternative Splicing

    Rukov, J. L., 2011, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  72. Published

    Exploring the conformational space of proteins using probabilistic models

    Harder, T. P., 2011

    Research output: Book/Report › Ph.D. thesis › Research

  73. Published

    Probabilistic methods in macromolecular structure prediction

    Frellsen, J., 2011, Københavns Universitet.

    Research output: Book/Report › Ph.D. thesis › Research

  74. Published

    Statistical inference of Identity-By-Descent sharing in human genomes and its applications in evolutionary and medical genetics

    Moltke, Ida, 2011

    Research output: Book/Report › Ph.D. thesis › Research

  75. 2010
  76. Published

    Bioinformatical approaches to RNA structure prediction & Sequencing of an ancient human genome

    Lindgreen, S., 2010, Biologisk Institut: Museum Tusculanum. 111 p.

    Research output: Book/Report › Ph.D. thesis › Research

  77. Published

    Deciphering Transcriptional Regulation: Computational Approaches

    Valen, E., 2010, Museum Tusculanum. 97 p.

    Research output: Book/Report › Ph.D. thesis › Research

  78. Published

    Sequence reconstruction and improved non-coding RNA homology search

    Menzel, K. P., 2010, Department of Basic Animal and Veterinary Sciences, University of Copenhagen. 172 p.

    Research output: Book/Report › Ph.D. thesis › Research

  79. 2008
  80. Published

    In vivo and in vitro studies of the neuronal RNA-binding protein Drosophila IMP

    Adolph, S. K., 2008, Biologisk Institut: Museum Tusculanum. 144 p.

    Research output: Book/Report › Ph.D. thesis › Research