- Published
"Out of the Can": A Draft Genome Assembly, Liver Transcriptome, and Nutrigenomics of the European Sardine, Sardina pilchardus
Machado, A. M., Tørresen, O. K., Kabeya, N., Couto, A., Petersen, Bent, Felicio, M., Campos, P. F., Fonseca, E., Bandarra, N., Lopes-Marques, M., Ferraz, R., Ruivo, R., Fonseca, M. M., Jentoft, S., Monroig, Ó., Rodrigues da Fonseca, Rute Andreia & Castro, L. F. C., 2018, In: Genes. 9, 10, p. 1-13 485.Research output: Contribution to journal › Journal article › Research › peer-review
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A resource for sustainable management: De novo assembly and annotation of the liver transcriptome of the Atlantic chub mackerel, Scomber colias
Machado, A. M., Felício, M., Fonseca, E., Rodrigues da Fonseca, Rute Andreia & Castro, L. F. C., 2018, In: Data in Brief. 18, p. 276-284 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
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DGCR8 acts as an adaptor for the exosome complex to degrade double-stranded structured RNAs
Macias, S., Cordiner, R. A., Gautier, P., Plass, M. & Caceres, J. F., 2015, In: Molecular Cell. 60, 6, p. 873-885 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
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DGCR8 HITS-CLIP reveals novel functions for the microprocessor
Macias, S., Plass, M., Stajuda, A., Michlewski, G., Eyras, E. & Cáceres, J. F., 2012, In: Nature Structural and Molecular Biology. 19, 8Research output: Contribution to journal › Journal article › Research › peer-review
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Nutrient Availability Does Not Affect Community Assembly in Root-Associated Fungi but Determines Fungal Effects on Plant Growth
Maciá-Vicente, J. G., Bai, B., Qi, R., Ploch, S., Breider, F. & Thines, M., 2022, In: mSystems. 7, 3, 14 p., e00304-22.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Evidence for a Na+/Ca2+ exchange mechanism in frog skin epithelium
Madsen, K. H., Larsen, Birger Brodin & Nielsen, Rasmus, 1999, In: Pflügers Archiv - European Journal of Physiology. 437, 2, p. 175-81 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Mesenchymal-epithelial crosstalk shapes intestinal regionalisation via Wnt and Shh signalling
Maimets, Martti, Pedersen, M. T., Guiu, J., Dreier, J., Thodberg, Malte, Antoku, Yasuko, Schweiger, P. J., Rib, Leonor, Bardini Bressan, Raul, Miao, Y., Garcia, K. C., Sandelin, Albin Gustav, Serup, Palle & Jensen, Kim Bak, 2022, In: Nature Communications. 13, 12 p., 715.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
An updated evolutionary classification of CRISPR-Cas systems
Makarova, K. S., Wolf, Y. I., Alkhnbashi, O. S., Costa, F., Shah, S. A., Saunders, S. J., Barrangou, R., Brouns, S. J. J., Charpentier, E., Haft, D. H., Horvath, P., Moineau, S., Mojica, F. J. M., Terns, R. M., Terns, M. P., White, M. F., Yakunin, A. F., Garrett, R. A., van der Oost, J., Backofen, R. & 1 others, , 2015, In: Nature Reviews. Microbiology. 13, 11, p. 722-736 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Predicted highly derived class 1 CRISPR-Cas system in Haloarchaea containing diverged Cas5 and Cas7 homologs but no CRISPR array
Makarova, K. S., Karamycheva, S., Shah, S. A., Vestergaard, G. A., Garrett, Roger Antony & Koonin, E. V., 2019, In: FEMS Microbiology Letters. 366, 7, 5 p., fnz079.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A genomic history of aboriginal Australia
Malaspinas, A. S., Westaway, M. C., Muller, C. E., Sousa, V. C., Lao, O., Alves, I., Bergström, A., Athanasiadis, G., Cheng, J. Y., Crawford, J. E., Heupink, T. H., Macholdt, E., Peischl, S., Rasmussen, S., Schiffels, S., Subramanian, S., Wright, J. L., Albrechtsen, A., Barbieri, C., Dupanloup, I. & 55 others, , 2016, In: Nature. 538, 7624, p. 207-214 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Two ancient human genomes reveal Polynesian ancestry among the indigenous Botocudos of Brazil
Malaspinas, A. S., Lao, O., Schroeder, H., Rasmussen, M., Raghavan, M., Moltke, I., Campos, P., Sagredo, F. S., Rasmussen, S., Gonçalves, V. F., Albrechtsen, A., Allentoft, M. E., Johnson, P. L. F., Li, M., Reis, S., Bernardo, D. V., DeGiorgio, M., Duggan, A. T., Bastos, M., Wang, Y. & 20 others, , 2014, In: Current biology : CB. 24, 21, p. R1035-R1037 3 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Toward Larger DNA Origami
Marchi, A. N., Saaem, I., Vogen, B. N., Brown, Stanley & LaBean, T. H., 2014, In: Nano Letters. 14, 10, p. 5740-5747 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A statistical view on the reference ratio method
Mardia, K., Frellsen, J., Borg, M., Ferkinghoff-Borg, J. & Hamelryck, Thomas Wim, 2011. 6 p.Research output: Contribution to conference › Paper › Research
- Published
Mixture Models for Spherical Data with Applications to Protein Bioinformatics
Mardia, K. V., Barber, S., Burdett, P. M., Kent, J. T. & Hamelryck, Thomas Wim, 2022, Directional Statistics for Innovative Applications: A Bicentennial Tribute to Florence Nightingale. Springer, p. 15-32 (Forum for Interdisciplinary Mathematics).Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
Statistics of bivariate von mises distributions
Mardia, K. V. & Frellsen, J., 2012, Bayesian methods in structural bioinformatics. Hamelryck, T., Mardia, K. & Ferkinghoff-Borg, J. (eds.). Springer, p. 159-178 20 p. (Statistics for Biology and Health).Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
Mixtures of concentrated multivariate sine distributions with applications to bioinformatics
Mardia, K. V., Kent, J. T., Zhang, Z., Taylor, C. C. & Hamelryck, Thomas Wim, 2012, In: Journal of Applied Statistics. 39, 11, p. 2475-2492 18 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The bchU gene of Chlorobium tepidum encodes the C-20 methyltransferase in bacteriochlorophyll c biosynthesis
Maresca, J. A., Gomez Maqueo Chew, A., Ponsatí, M. R., Frigaard, Niels-Ulrik, Ormerod, J. G. & Bryant, D. A., 2004, In: Journal of Bacteriology. 186, 9, p. 2558-2566 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Population genomics of the Viking world: [incl. correction]
Margaryan, A., Lawson, D. J., Sikora, M., Racimo, F., Rasmussen, S., Moltke, I., Cassidy, L. M., Jørsboe, E., Ingason, A., Pedersen, M. W., Korneliussen, T., Wilhelmson, H., Buś, M. M., de Barros Damgaard, P., Martiniano, R., Renaud, G., Bhérer, C., Moreno-Mayar, J. V., Fotakis, A. K., Allen, M. & 30 others, , 2020, In: Nature. 585, 7825, p. 390-396 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Eight millennia of matrilineal genetic continuity in the South Caucasus
Margaryan, Ashot, Derenko, M., Hovhannisyan, H., Malyarchuk, B., Heller, Rasmus, Khachatryan, Z., Avetisyan, P., Badalyan, R., Bobokhyan, A., Melikyan, V., Sargsyan, G., Piliposyan, A., Simonyan, H., Mkrtchyan, R., Denisova, G., Yepiskoposyan, L., Willerslev, Eske & Allentoft, Morten Erik, 10 Jul 2017, In: Current Biology. 27, 13, p. 2023-2028 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A conceptual framework for the identification of candidate drugs and drug targets in acute promyelocytic leukemia
Marstrand, T. T., Borup, R., Willer, A., Borregaard, N., Sandelin, Albin Gustav, Porse, Bo Torben & Theilgaard-Mønch, Kim, Jul 2010, In: Leukemia. 24, 7, p. 1265-75 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Asap: a framework for over-representation statistics for transcription factor binding sites.
Marstrand, T. T., Frellsen, J., Moltke, Ida, Thiim, M., Valen, E., Retelska, D. & Krogh, Anders, 2008, In: PLoS ONE. 3, 2, p. e1623Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Reconstructing genome evolution in historic samples of the Irish potato famine pathogen
Martin, M. D., Cappellini, Enrico, Samaniego Castruita, J. A., Zepeda Mendoza, M. L., Campos, P., Seguin-Orlando, A., Wales, N., Orlando, L. A. A., Ho, S. Y. W., Dietrich, F. S., Mieczkowski, P. A., Heitman, J., Willerslev, Eske, Krogh, Anders, Ristaino, J. B. & Gilbert, M Thomas P, 18 Jul 2013, In: Nature Communications. 4, 7 p., 2172.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Orthologous proteins of experimental de- and remyelination are differentially regulated in the CSF proteome of multiple sclerosis subtypes
Martin, N. A., Nawrocki, A., Molnar, V., Elkjaer, M. L., Thygesen, E. K., Palkovits, M., Acs, P., Sejbaek, T., Nielsen, H. H., Hegedus, Z., Sellebjerg, Finn Thorup, Molnar, T., Barbosa, E. G. V., Alcaraz, N., Gallyas, F. J., Svenningsen, A. F., Baumbach, J., Lassmann, H., Larsen, M. R. & Illes, Z., 2018, In: PLOS ONE. 13, 8, p. 1-26 e0202530.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Når enzymer tøver - CTP - biosyntesen i mælkesyrebakterier
Martinussen, J., Willemoës, Martin, Kilstrup, M., Jensen, P. R. & Hammer, K., 2005, In: Dansk Kemi. 86, 8, p. 20-22Research output: Contribution to journal › Comment/debate › Research
- Published
Plant YTHDF proteins are direct effectors of antiviral immunity against an N6-methyladenosine-containing RNA virus
Martínez-Pérez, M., Aparicio, F., Arribas Hernandez, Laura, Tankmar, Mathias Due, Rennie, Sarah, von Bülow, Sören, Lindorff-Larsen, Kresten, Brodersen, Peter & Pallas, V., 2023, In: EMBO Journal. 42, 18, 17 p., e113378.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
- Published
Cytoplasmic mRNPs revisited: Singletons and condensates
Mateu-Regue, A., Nielsen, Finn Cilius & Christiansen, Jan, 2020, In: BioEssays. 42, 12, 13 p., 2000097.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Unveiling mRNP composition by fluorescence correlation and cross-correlation spectroscopy using cell lysates
Mateu-Regué, À., Christiansen, Jan, Bagger, F. O., Hellriegel, C. & Nielsen, Finn Cilius, 2021, In: Nucleic Acids Research. 49, 20, 15 p., e119.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Single mRNP Analysis Reveals that Small Cytoplasmic mRNP Granules Represent mRNA Singletons
Mateu-Regué, À., Christiansen, Jan, Bagger, F. O., Winther, O., Hellriegel, C. & Nielsen, Finn Cilius, 2019, In: Cell Reports. 29, 3, p. 736-748, e1-e4Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Benchmarking the HLA typing performance of Polysolver and Optitype in 50 Danish parental trios
Matey-Hernandez, M. L., Danish Pan Genome Consortium, D. P. G. C., Brunak, Søren, Izarzugaza, J. M. G., Sørensen, L. M., Petersen, Bent, Sibbesen, Jonas Andreas, Liu, S., Belling, K. G., Have, C. T., Bork-Jensen, J., Sun, J., Hansen, Torben, Krogh, Anders, Sørensen, Thorkild I.A., Pedersen, Oluf Borbye, Wang, J., Eiberg, Hans Rudolf Lytchoff & Kristiansen, Karsten, 2018, In: BMC Bioinformatics. 19, p. 1-12 239.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
JASPAR 2014: an extensively expanded and updated open-access database of transcription factor binding profiles
Mathelier, A., Zhao, X., Zhang, A. W., Parcy, F., Worsley-Hunt, R., Arenillas, D. J., Buchman, S., Chen, C., Chou, A., Ienasescu, H., Lim, J., Shyr, C., Tan, G., Zhou, M., Lenhard, B., Sandelin, Albin Gustav & Wasserman, W. W., 2014, In: Nucleic Acids Research. 42, p. D142-D147 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles
Mathelier, A., Fornes, O., Arenillas, D. J., Chen, C., Denay, G., Lee, J., Shi, W., Shyr, C., Tan, G., Worsley-Hunt, R., Zhang, A. W., Parcy, F., Lenhard, B., Sandelin, Albin Gustav & Wasserman, W. W., 2016, In: Nucleic Acids Research. 44, D1, p. D110-D115 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The AIMe registry for artificial intelligence in biomedical research
Matschinske, J., Alcaraz, N., Benis, A., Golebiewski, M., Grimm, D. G., Heumos, L., Kacprowski, T., Lazareva, O., List, M., Louadi, Z., Pauling, J. K., Pfeifer, N., Röttger, R., Schwämmle, V., Sturm, G., Traverso, A., Van Steen, K., de Freitas, M. V., Villalba Silva, G. C., Wee, L. & 5 others, , 2021, In: Nature Methods. 18, 10, p. 1128-1131 4 p.Research output: Contribution to journal › Comment/debate › Research › peer-review
- Published
Estimating the timing of multiple admixture pulses during local ancestry inference
Medina, P., Thornlow, B., Nielsen, Rasmus & Corbett-Detig, R., 2018, In: Genetics. 210, 3, p. 1089-1107 19 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Pooled analysis of frontal lobe transcriptomic data identifies key mitophagy gene changes in Alzheimer's disease brain
Mei, T., Li, Yuan, Orduña Dolado, A., Li, Zhiquan, Andersson, Robin, Berliocchi, Laura & Rasmussen, Lene Juel, 2023, In: Frontiers in Aging Neuroscience. 15, 14 p., 1101216.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Testing for Hardy-Weinberg equilibrium in structured populations using genotype or low-depth next generation sequencing data
Meisner, Jonas & Albrechtsen, Anders, 2019, In: Molecular Ecology Resources. 19, 5, p. 1144-1152 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Detecting selection in low-coverage high-throughput sequencing data using principal component analysis
Meisner, Jonas, Albrechtsen, Anders & Hanghøj, Kristian Ebbesen, 2021, In: BMC Bioinformatics. 22, 13 p., 470.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Method Development for Next-Generation Sequencing Data in Population Genetics
Meisner, Jonas, 2020, Department of Biology, Faculty of Science, University of Copenhagen. 154 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
Haplotype and population structure inference using neural networks in whole-genome sequencing data
Meisner, Jonas & Albrechtsen, Anders, 2022, In: Genome Research. 32, 8, p. 1542-1552 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Large-scale inference of population structure in presence of missingness using PCA
Meisner, Jonas, Liu, S., Huang, M. & Albrechtsen, Anders, 2021, In: Bioinformatics. 37, 13, p. 1868-1875 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Inferring Population Structure and Admixture Proportions in Low-Depth NGS Data
Meisner, Jonas & Albrechtsen, Anders, 2018, In: Genetics. 210, 2, p. 719-731Research output: Contribution to journal › Journal article › Research › peer-review
- Published
New histone supply regulates replication fork speed and PCNA unloading
Mejlvang, J., Feng, Y., Alabert, C., Neelsen, K. J., Jasencakova, Zuzana, Zhao, X., Lees, M., Sandelin, Albin Gustav, Pasero, P., Lopes, M. & Groth, Anja, 6 Jan 2014, In: Journal of Cell Biology. 204, 1, p. 29-43 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genetic diversity among ancient Nordic populations
Melchior, L. C., Lynnerup, Niels, Siegismund, Hans Redlef, Kivisild, T. & Dissing, J., 2010, In: PLOS ONE. 5, 7, 9 p., e11898.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Reliability measures for membrane protein topology prediction algorithms
Melén, K., Krogh, Anders & Heijne, G. V., 2003, In: Journal of Molecular Biology. 327(3), p. 735-744Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Electronic energy transfer involving carotenoid pigments in chlorosomes of two green bacteria: Chlorobium tepidum and Chloroflexus aurantiacus
Melø, T. B., Frigaard, Niels-Ulrik, Matsuura, K. & Razi Naqvi, K., 2000, In: Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy. 56, 10, p. 2001-2010 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The tedious task of finding homologous noncoding RNA genes
Menzel, K. P., Gorodkin, Jan & Stadler, P. F., 2009, In: RNA: A publication of the RNA Society. 15, 12, p. 2075-2082 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
On the accuracy of short read mapping
Menzel, K. P., Frellsen, J., Plass, M., Rasmussen, S. H. & Krogh, Anders, 2013, Deep Sequencing Data Analysis. Shomron, N. (ed.). Springer Science+Business Media, p. 39-59 21 p. (Methods in Molecular Biology, Vol. 1038).Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
RILogo: visualising RNA-RNA interactions
Menzel, K. P., Seemann, Ernst Stefan & Gorodkin, Jan, 2012, In: Bioinformatics. 28, 19, p. 2523-2526 4 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Tanimoto's Best Barbecue: Discovering Regulatory Modules using Tanimoto Scores
Menzel, K. P., Mosig, A. & Stadler, P. F., 2007, Lecture Notes in Informatics: Proceedings of the German Conference on Bioinformatics 2007. Falter, C., Schliep, A., Selbig, J. & Walther, M. V. A. (eds.). p. 68-77 10 p.Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
maxAlike: maximum likelihood-based sequence reconstruction with application to improved primer design for unknown sequences
Menzel, K. P., Stadler, P. F. & Gorodkin, Jan, 2011, In: Bioinformatics. 27, 3, p. 317-325 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Sequence reconstruction and improved non-coding RNA homology search
Menzel, K. P., 2010, Department of Basic Animal and Veterinary Sciences, University of Copenhagen. 172 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
Maximum likelihood estimation of weight matrices for targeted homology search
Menzel, P., Gorodkin, Jan & Stadler, P. F., 2009, Proceedings of the German Conference on Bioinformatics 2009. Grosse, I., Neumann, S., Posch, S., Schreiber, F. & Stadler, P. (eds.). Gesellschaft für Informatik, p. 211-220 10 p. (Lecture Notes in Informatics).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
- Published
Comparative metagenomics of eight geographically remote terrestrial hot springs
Menzel, P., Islin, S. R., Rike, A. G., Lin, L., Zhang, Q., Contursi, P., Moracci, M., Kristjansson, J. K., Bolduc, B., Gavrilov, S., Ravin, N., Mardanov, A., Bonch-Osmolovskaya, E., Young, M., Krogh, Anders & Peng, Xu, 2015, In: Microbial Ecology. 70, 2, p. 411-424 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Fast and sensitive taxonomic classification for metagenomics with Kaiju
Menzel, P., Ng, K. L. & Krogh, Anders, 2016, In: Nature Communications. 7, 9 p., 11257.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Identification of a nuclear exosome decay pathway for processed transcripts
Meola, N., Domanski, M., Karadoulama, Evdoxia, Chen, Y., Gentil, C. A. J., Pultz, D., Vitting-Seerup, K., Lykke-Andersen, S., Andersen, J. S., Sandelin, Albin Gustav & Jensen, T. H., 3 Nov 2016, In: Molecular Cell. 64, 3, p. 520-533 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genetic consequences of human forest exploitation in two colobus monkeys in Guinea Bissau
Minhos, T., Chikhi, L., Sousa, C., Vicente, L. M., da Silva, M. F., Heller, Rasmus, Casanova, C. & Bruford, M. W., 2016, In: Biological Conservation. 194, p. 194-208 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
EZH2 is a potential therapeutic target for H3K27M-mutant pediatric gliomas
Mohammad, F., Weissmann, S., Leblanc, B. O., Pandey, D. P., Højfeldt, J. W., Comet, I., Zheng, C., Johansen, Jens Vilstrup, Rapin, N. P. J., Porse, Bo Torben, Tvardovskiy, A., Jensen, O. N., Olaciregui, N. G., Lavarino, C., Suñol, M., de Torres, C., Mora, J., Carcaboso, A. M. & Helin, K., Apr 2017, In: Nature Medicine. 23, 4, p. 483-492 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Statistical inference of Identity-By-Descent sharing in human genomes and its applications in evolutionary and medical genetics
Moltke, Ida, 2011Research output: Book/Report › Ph.D. thesis › Research
- Published
A method for detecting IBD regions simultaneously in multiple individuals--with applications to disease genetics
Moltke, Ida, Albrechtsen, Anders, Hansen, Thomas van Overeem, Nielsen, Finn Cilius & Nielsen, Rasmus, 2011, In: Genome Research. 21, 7, p. 1168-80 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Identifying a living great-grandson of the Lakota Sioux leader Tatanka Iyotake (Sitting Bull)
Moltke, Ida, Korneliussen, Thorfinn Sand, Seguin-Orlando, A., Moreno Mayar, J. Víctor, LaPointe, E., Billeck, W. & Willerslev, Eske, 2021, In: Science Advances. 7, 44, 7 p., eabh2013.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A common Greenlandic TBC1D4 variant confers muscle insulin resistance and type 2 diabetes
Moltke, I., Grarup, N., Jørgensen, M. E., Bjerregaard, P., Treebak, J. T., Fumagalli, M., Korneliussen, T. S., Andersen, M. A., Nielsen, T. S., Krarup, N. T., Gjesing, A. M. P., Zierath, J. R., Linneberg, A., Wu, X., Sun, G., Jin, X., Al-Aama, J., Wang, J., Borch-Johnsen, K., Pedersen, O. & 3 others, , 2014, In: Nature. 512, 7513, p. 190-193 4 p.Research output: Contribution to journal › Letter › Research › peer-review
- Published
RelateAdmix: a software tool for estimating relatedness between admixed individuals
Moltke, Ida & Albrechtsen, Anders, 2014, In: Bioinformatics. 30, 7, p. 1027-1028 2 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Uncovering the genetic history of the present-day greenlandic population
Moltke, Ida, Fumagalli, M., Korneliussen, Thorfinn Sand, Crawford, J. E., Bjerregaard, P., Jørgensen, M. E., Grarup, Niels, Gulløv, H. C., Linneberg, Allan René, Pedersen, Oluf Borbye, Hansen, Torben, Nielsen, Rasmus & Albrechtsen, Anders, 2015, In: American Journal of Human Genetics. 96, 1, p. 54-69 16 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
New evidence for hybrid zones of forest and savanna elephants in Central and West Africa
Mondol, S., Moltke, Ida, Hart, J., Keigwin, M., Brown, L., Stephens, M. & Wasser, S. K., 2015, In: Molecular Ecology. 24, 24, p. 6134-6147 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
NetTCR-2.0 enables accurate prediction of TCR-peptide binding by using paired TCRα and β sequence data
Montemurro, A., Schuster, Viktoria, Povlsen, H. R., Bentzen, A. K., Jurtz, V., Chronister, W. D., Crinklaw, A., Hadrup, S. R., Winther, Ole, Peters, B., Jessen, L. E. & Nielsen, M., 2021, In: Communications Biology . 4, 13 p., 1060.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Extinctions, genetic erosion and conservation options for the black rhinoceros (Diceros bicornis)
Moodley, Y., Russo, I. M., Dalton, D. L., Kotzé, A., Muya, S., Haubensak, P., Bálint, B., Munimanda, G. K., Deimel, C., Setzer, A., Dicks, K., Herzig-Straschil, B., Kalthoff, D. C., Siegismund, Hans Redlef, Robovský, J., O'Donoghue, P. & Bruford, M. W., 8 Feb 2017, In: Scientific Reports. 7, 16 p., 41417.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Cellular origin of prognostic chromosomal aberrations in AML patients
Mora-Jensen, H., Jendholm, L. J., Rapin, N. P. J., Andersen, M. K., Roug, A. S., Bagger, F. O., Bullinger, L., Winther, Ole, Borregaard, N., Porse, Bo Torben & Theilgaard-Mønch, Kim, 11 Feb 2015, In: Leukemia. 29, p. 1785-1789 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Benchmarking RNA Editing Detection Tools
Morales, D. R., Rennie, Sarah & Uchida, S., 2023, In: BioTech. 12, 3, 18 p., 56.Research output: Contribution to journal › Review › Research › peer-review
- Published
Terminal Pleistocene Alaskan genome reveals first founding population of Native Americans
Moreno Mayar, J. Víctor, Potter, B. A., Vinner, Lasse, Steinrucken, M., Rasmussen, Simon, Terhorst, J., Kamm, J. A., Albrechtsen, Anders, Malaspinas, A., Sikora, Martin, Reuther, J. D., Irish, J. D., Malhi, R. S., Orlando, L. A. A., Song, Y. S., Nielsen, Rasmus, Meltzer, D. J. & Willerslev, Eske, 2018, In: Nature Genetics. 553, 7687, p. 203-207 5 p.Research output: Contribution to journal › Letter › Research › peer-review
- Published
A likelihood method for estimating present-day human contamination in ancient male samples using low-depth X-chromosome data
Moreno-Mayar, J. V., Korneliussen, Thorfinn Sand, Dalal, J., Renaud, Gabriel, Albrechtsen, Anders, Nielsen, Rasmus & Malaspinas, A., 2020, In: Bioinformatics. 36, 3, p. 828-841 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A Probabilistic Programming Approach to Protein Structure Superposition
Sanz Moreta, Lys, Al-Sibahi, A. S., Theobald, D., Bullock, W., Rommes, B. N., Manoukian, Andreas & Hamelryck, Thomas Wim, 2019, 2019 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology, CIBCB 2019. Baruzzo, G., Daberdaku, S., Di Camillo, B., Furini, S., Giordano, E. D. & Nicosia, G. (eds.). IEEE, 5 p. 8791469Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
- Published
Bayesian protein superposition using Hamiltonian Monte Carlo
Sanz Moreta, Lys, Al-Sibahi, A. S. & Hamelryck, Thomas Wim, Oct 2020, Proceedings - IEEE 20th International Conference on Bioinformatics and Bioengineering, BIBE 2020. IEEE, p. 1-11 9288019Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
- Published
Gene expression analysis of the emergence of epileptiform activity after focal injection of kainic acid into mouse hippocampus
Motti, D., Le Duigou, C., Eugène, E., Chemaly, N., Wittner, L., Lazarevic, D., Krmac, H., Marstrand, T., Valen, E., Sanges, R., Stupka, E., Sandelin, Albin Gustav, Cherubini, E., Gustincich, S. & Miles, R., 2010, In: European Journal of Neuroscience. 32, 8, p. 1364-79 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Retromer contributes to immunity-associated cell death in Arabidopsis
Munch, D., Teh, O., Malinovsky, F. G., Liu, Q., Vetukuri, R. R., El Kasmi, F., Brodersen, Peter, Hara-Nishimura, I., Dangl, J. L., Petersen, Morten, Mundy, J. & Hofius, D., 2015, In: Plant Cell. 27, 2, p. 463-479 17 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genetic diversity in the desert warthog (Phacochoerus aethiopicus delameri) population of eastern Africa
Muwanika, V. B., Kock, R., Masembe, C. & Siegismund, Hans Redlef, 2012, In: South African Journal of Wildlife Research. 42, 1, p. 54-59 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The role of a traditional and western diet on glucose homeostasis in Greenlandic Inuit carriers and non-carriers of type 2 diabetes variant in the TBC1D4 gene: A protocol for a randomized clinical trial
Møller, G., Lind, M. V., Hauptmann, A. L., Senftleber, N., Hansen, C. B., Hansen, Torben, Jørgensen, M. E. & Lauritzen, Lotte, 2021, In: Contemporary Clinical Trials Communications. 21, 6 p., 100734.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Circular DNA elements of chromosomal origin are common in healthy human somatic tissue
Møller, H. D., Mohiyuddin, M., Prada Luengo, Inigo, Sailani, M. R., Halling, Jens Frey, Plomgaard, Peter Stendahl, Maretty, L., Hansen, Anders Johannes, Snyder, M. P., Pilegaard, Henriette, Lam, H. Y. K. & Regenberg, Birgitte, 1 Dec 2018, In: Nature Communications. 9, 12 p., 1069.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Morphometric, AFLP and plastid microsatellite variation in populations of Scalesia divisa and S. incisa (Asteraceae) from the Galápagos Islands
Nielsen, Lene Rostgaard, Cowan, R. S., Siegismund, Hans Redlef, Adsersen, Henning Emil, PHILIPP, M. & Fay, M. F., 1 Nov 2003, In: Botanical Journal of the Linnean Society. 143, 3, p. 243-254 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Partial self-incompatibility in the polyploid endemic species Scalesia affinis (Asteraceae) from the Galápagos: remnants of a self-incompatibility system?
Nielsen, Lene Rostgaard, Siegismund, Hans Redlef & PHILIPP, M., 1 May 2003, In: Botanical Journal of the Linnean Society. 142, 1, p. 93-101 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Challenges for serology-based characterization of foot-and-mouth disease outbreaks in endemic areas; identification of two separate lineages of serotype O FMDV in Uganda in 2011
Namatovu, A., Belsham, G. J., Ayebazibwe, C., Dhikusooka, M. T., Wekesa, S. N., Siegismund, Hans Redlef, Muwanika, V. B. & Tjørnehøj, K., 2015, In: Transboundary and Emerging Diseases. 62, 5, p. 522-534 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Characterization of foot-and-mouth disease viruses (FMDVs) from Ugandan cattle outbreaks during 2012-2013: evidence for circulation of multiple serotypes
Namatovu, A., Tjørnehøj, K., Belsham, G. J., Dhikusooka, M. T., Wekesa, S. N., Muwanika, V. B., Siegismund, Hans Redlef & Ayebazibwe, C., 2015, In: PloS one. 10, 2, 17 p., e0114811.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Laboratory capacity for diagnosis of foot-and-mouth disease in Eastern Africa: implications for the progressive control pathway
Namatovu, A., Wekesa, S. N., Tjørnehøj, K., Dhikusooka, M. T., Muwanika, V. B., Siegismund, Hans Redlef & Ayebazibwe, C., 2013, In: B M C Veterinary Research. 9, 19, 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A review on ethnobotany, phytochemistry, and pharmacology of the genus Didymocarpus wall. (Gesneriaceae)
Nanjala, C., Odago, W. O., Rono, P. C., Waswa, E. N., Mutinda, E. S., Oulo, M. A., Muema, F. W., Wanga, V. O., Mkala, E. M., Kuja, J., Njire, M. M. & Hu, G. W., 2022, In: Journal of Ethnopharmacology. 295, 25 p., 115404.Research output: Contribution to journal › Review › Research › peer-review
- Published
Plastome structure of 8 Calanthe s.l. species (Orchidaceae): comparative genomics, phylogenetic analysis
Nanjala, C., Wanga, V. O., Odago, W., Mutinda, E. S., Waswa, E. N., Oulo, M. A., Mkala, E. M., Kuja, J., Yang, J., Dong, X., Hu, G. & Wang, Q., 2022, In: BMC Plant Biology. 22, 22 p., 387.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Bioinformatics of transcription factor binding prediction
Navarro-Delgado, E. I., Salgado-Albarrán, M., Torres-Arciga, K., Alcaraz, N., Soto-Reyes, E., Herrera, L. A. & González-Barrios, R., 2022, Bioinformatics and Human Genomics Research. CRC Press, p. 203-221 19 p.Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
An RNAi independent antiviral activity of the Arabidopsis thaliana DCL2
Nielsen, C. P. S., 2020, Department of Biology, Faculty of Science, University of Copenhagen. 104 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
RNA assemblages orchestrate complex cellular processes
Nielsen, Finn Cilius, Hansen, H. T. & Christiansen, Jan, 2016, In: BioEssays. 38, 7, p. 674-681 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A family of insulin-like growth factor II mRNA-binding proteins represses translation in late development
Nielsen, J., Christiansen, Jan, Lykke-Andersen, J., Johnsen, A. H., Wewer, Ulla M. & Nielsen, Finn Cilius, 1999, In: Molecular and Cellular Biology. 19, 2, p. 1262-1270 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Structures and Interactions of Proteins in the Brain: The Interaction Between LRP1 and Aß & Structure and Self-Assembly of Arc
Nielsen, L. D., 2017, Department of Biology, Faculty of Science, University of Copenhagen.Research output: Book/Report › Ph.D. thesis › Research
- Published
Breeding system of Scalesia divisa Andersson, an endemic Asteraceae from the Galápagos Islands
Nielsen, Lene Rostgaard, Philipp, M., Adsersen, Henning Emil & Siegismund, Hans Redlef, 2000, In: Norske Videnskaps-Akademi. I, Mat.-naturv. klasse. Skrifter, Ny serie. 39, p. 127-138 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Selective advantage of ray florets in Scalesia affinis and S. pedunculata (Asteraceae), two endemic species from the Galápagos
Nielsen, Lene Rostgaard, Philipp, M. & Siegismund, Hans Redlef, 2002, In: Evolutionary Ecology. 16, 2, p. 139-153 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Roles of multiple surface sites, long substrate binding clefts, and carbohydrate binding modules in the action of amylolytic enzymes on polysaccharide substrates
Nielsen, M. M., Seo, E. S., Dilokpimol, A., Andersen, J., Hachem, M. A., Naested, H., Willemoës, Martin, Bozonnet, S., Kandra, L., Gymnt, G., Haser, R., Aghajari, N. & Svensson, B., 2008, In: Biocatalysis and Biotransformation. 26, 1 & 2, p. 59-67Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Differential gene expression in the otic capsule and the middle ear-an annotation of bone-related signaling genes
Nielsen, M. C., Martin-Bertelsen, T., Friis, M., Winther, Ole, Friis-Hansen, Lennart Jan, Rye-Jørgensen, N., Bloch, S. & Sørensen, Mads Sølvsten, 2015, In: Otology & Neurotology. 36, 4, p. 727-732 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Bone signaling in middle ear development: a genome-wide differential expression analysis
Nielsen, M. C., Martin-Bertelsen, T., Friis, M., Winther, Ole, Friis-Hansen, Lennart Jan, Cayé-Thomasen, Per & Sørensen, Mads Sølvsten, 2014, In: Anatomical Record. 297, 12, p. 2349-2355 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The middle ear immune defense changes with age
Nielsen, M. C., Friis, M., Martin-Bertelsen, T., Winther, Ole, Friis-Hansen, Lennart Jan & Cayé-Thomasen, Per, 2016, In: European Archives of Oto-Rhino-Laryngology. 273, 1, p. 81-86 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Sphingosine-1-phosphate signaling in inflammatory bowel disease
Nielsen, Ole Haagen, Li, Yuan, Lindbom, B. J. & Coskun, M., Apr 2017, In: Trends in Molecular Medicine. 23, 4, p. 362-374 13 p.Research output: Contribution to journal › Review › Research › peer-review
- Published
Iron replacement therapy: do we need new guidelines?
Nielsen, Ole Haagen, Coskun, M. & Weiss, G., 2016, In: Current Opinion in Gastroenterology. 32, 2, p. 128-135 8 p.Research output: Contribution to journal › Review › Research › peer-review
- Published
Polyphyletic Origin of the Small-Bodied, High-Arctic Subspecies of Tundra Reindeer (Rangifer tarandus)
Nielsen, P. G., Meldgaard, Morten, Pääbo, S. & Arctander, P., 1998, In: Molecular Phylogenetics and Evolution. 10, 2, p. 151-159 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Adaptionism-30 years after Gould and Lewontin
Nielsen, Rasmus, 2009, In: Evolution. 63, 10, p. 2487-90 3 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
SNP calling, genotype calling, and sample allele frequency estimation from new-generation sequencing data
Nielsen, Rasmus, Korneliussen, Thorfinn Sand, Albrechtsen, Anders, Li, Y. & Wang, J., 2012, In: PLoS ONE. 7, 7, 11 p., e37558.Research output: Contribution to journal › Journal article › Research › peer-review
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Reconstructing genome evolution in historic samples of the Irish potato famine pathogen
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Natural selection affects multiple aspects of genetic variation at putatively peutral sites across the human genome
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True single-molecule DNA sequencing of a pleistocene horse bone
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