- Published
An m6A-YTH Module Controls Developmental Timing and Morphogenesis in Arabidopsis
Arribas Hernandez, Laura, Bressendorff, Simon, Hansen, M. H., Poulsen, C., Erdmann, S. & Brodersen, Peter, 2018, In: Plant Cell. 30, 5, p. 952-967 16 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Post-Transcriptional Gene Regulation Mediated by Small RNAs and ARGONAUTE1 in Arabidopsis
Arribas Hernandez, Laura, 2015, Department of Biology, Faculty of Science, University of Copenhagen. 232 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
mRNA decay of most arabidopsis miRNA targets requires slicer activity of AGO1
Arribas Hernandez, Laura, Kielpinski, L. J. & Brodersen, Peter, 2016, In: Plant Physiology. 171, 4, p. 2620-2632 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Detection of slicer activity by immunopurified plant ARGONAUTE1
Arribas Hernandez, Laura, Vigh, Maria Louisa & Brodersen, Peter, 2019, Plant MicroRNAs: Methods and Protocols. Folter, S. D. (ed.). Humana Press, p. 295-316 22 p. (Methods in Molecular Biology, Vol. 1932).Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
The slicer activity of ARGONAUTE1 is required specifically for the phasing, not production, of trans-acting short interfering RNAs in Arabidopsis
Arribas Hernandez, Laura, Marchais, A., Poulsen, C., Haase, B., Hauptmann, J., Benes, V., Meister, G. & Brodersen, Peter, 2016, In: The Plant Cell. 28, 7, p. 1563-1580 18 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Occurrence and Functions of m6A and Other Covalent Modifications in Plant mRNA
Arribas Hernandez, Laura & Brodersen, Peter, 2020, In: Plant Physiology. 182, 1, p. 79-96 18 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Principles of mRNA targeting via the Arabidopsis m6A-binding protein ECT2
Arribas Hernandez, Laura, Rennie, Sarah, Köster, T., Porcelli, C., Lewinski, M., Staiger, D., Andersson, Robin & Brodersen, Peter, 2021, In: eLife. 10, 33 p., e72375.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
MacroLoops for microRNAs: shall we revise the maximum allowed size?
Arribas Hernandez, Laura, 2024, In: The Plant Cell. 36, 5, p. 1572-1573 2 p.Research output: Contribution to journal › Letter › Research › peer-review
- Published
The YTHDF proteins ECT2 and ECT3 bind largely overlapping target sets and influence target mRNA abundance, not alternative polyadenylation
Arribas Hernandez, Laura, Rennie, Sarah, Schon, M., Porcelli, C., Enugutti, B., Andersson, Robin, Nodine, M. D. & Brodersen, Peter, 2021, In: eLife. 10, 27 p., e72377.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Recurrent requirement for the m6A-ECT2/ECT3/ECT4 axis in the control of cell proliferation during plant organogenesis
Arribas Hernandez, Laura, Simonini, S., Hansen, M. H., Botterweg Paredes, E., Bressendorff, Simon, Dong, Y., Østergaard, L. & Brodersen, Peter, 2020, In: Development. 147, 14, 19 p., dev189134.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Estimating narrow-sense heritability using family data from admixed populations
Athanasiadis, G., Speed, D., Lepola, Mette Andersen, Appel, E. V. R., Grarup, Niels, Brandslund, I., Jørgensen, M. E., Larsen, C. V. L., Bjerregaard, P., Hansen, Torben & Albrechtsen, Anders, 2020, In: Heredity. 124, 6, p. 751-762 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Spatially resolved analysis of microenvironmental gradient impact on cancer cell phenotypes
Auxillos, Jamie Yam, Crouigneau, R., Li, Y. F., Dai, Yifan, Stigliani, Arnaud, Tavernaro, I., Resch-Genger, U., Sandelin, Albin Gustav, Marie, R. & Pedersen, Stine Helene Falsig, 2024, In: Science Advances. 10, 18, 17 p., eadn3448.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Multiplex Genome Engineering for Optimizing Bioproduction in Saccharomyces cerevisiae
Auxillos, Jamie Yam, Garcia-Ruiz, E., Jones, S., Li, T., Jiang, S., Dai, J. & Cai, Y., 19 Mar 2019, In: Biochemistry. 58, 11, p. 1492-1500 9 p.Research output: Contribution to journal › Review › Research › peer-review
- Published
Antibodies against foot-and-mouth disease (FMD) virus in African buffalos (Syncerus caffer) in selected National Parks in Uganda (2001-2003)
Ayebazibwe, C., Mwiine, F. N., Balinda, S. N., Tjørnehøj, K., Masembe, C., Muwanika, V. B., Okurut, A. R. A., Siegismund, Hans Redlef & Alexandersen, S., 2010, In: Transboundary and Emerging Diseases. 57, 4, p. 286-92 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The role of African buffalos (syncerus caffer) in the maintenance of foot-and-mouth disease in Uganda
Ayebazibwe, C., Mwiine, F. N., Tjørnehøj, K., Balinda, S. N., Muwanika, V. B., Okurut, A. R. A., Belsham, G. J., Normann, P., Siegismund, Hans Redlef & Alexandersen, S., 2010, In: BMC Veterinary Research. 6, 13 p., 54.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Patterns, risk factors and characteristics of reported and perceived foot-and-mouth disease (FMD) in Uganda
Ayebazibwe, C., Tjørnehøj, K., Mwiine, F. N., Muwanika, V. B., Ademun Okurut, A. R., Siegismund, Hans Redlef & Alexandersen, S., 2010, In: Tropical Animal Health and Production. 42, 7, p. 1547-59 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Proteomic profiling of gill GSTs in Mytilus galloprovincialis from the North of Portugal and Galicia evidences variations at protein isoform level with a possible relation with water quality
Azevedo, C. C., Guzman-Guillen, R., Martins, J. C., Osório, H., Vasconcelos, V., Rodrigues da Fonseca, Rute Andreia & Campos, A., 2015, In: Marine Environmental Research. 110, p. 152-161 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
HemaExplorer: a database of mRNA expression profiles in normal and malignant haematopoiesis
Bagger, F. O., Rapin, N. P. J., Theilgaard-Mønch, Kim, Kaczkowski, B., Thorén, L. A. M., Jendholm, L. J., Winther, Ole & Porse, Bo Torben, 2013, In: Nucleic Acids Research. 41, Database issue, p. D1034-D1039 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Aberrant Gene Expression in Acute Myeloid Leukaemia
Bagger, F. O., 2014, Department of Biology, Faculty of Science, University of Copenhagen.Research output: Book/Report › Ph.D. thesis › Research
- Published
HemaExplorer: a Web server for easy and fast visualization of gene expression in normal and malignant hematopoiesis
Bagger, F. O., Rapin, N. P. J., Theilgaard-Mønch, Kim, Kaczkowski, B., Jendholm, L. J., Winther, O. & Porse, Bo Torben, 2012, In: Blood. 119, 26, p. 6394-6395 2 p.Research output: Contribution to journal › Comment/debate › Research
- Published
BloodSpot: a database of gene expression profiles and transcriptional programs for healthy and malignant haematopoiesis
Bagger, F. O., Sasivarevic, D., Hadi Sohi, S., Laursen, L. G., Pundhir, Sachin, Sønderby, C. K., Winther, Ole, Rapin, N. & Porse, Bo Torben, 4 Jan 2016, In: Nucleic Acids Research. 44, D1, p. D917-24 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Analysis of telomerase target gene expression effects from murine models in patient cohorts by homology translation and random survival forest modeling
Bagger, F. O., Bruedigam, C. & Lane, S. W., 2016, In: Genomics Data. 7, p. 275-280 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
An update on principles of m6A targeting
Bai, B., 2022, In: Trends in Plant Science. 27, 3, p. 224-226 3 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Bending during seedling emergence: Mechanochemical insight
Bai, B., 2021, In: Trends in Plant Science. 26, 9, p. 879-881 3 p.Research output: Contribution to journal › Letter › Research › peer-review
- Published
Shared activity patterns arising at genetic susceptibility loci reveal underlying genomic and cellular architecture of human disease
Baillie, J. K., Bretherick, A., Haley, C. S., Clohisey, S., Gray, A., Neyton, L. P. A., Barrett, J., Stahl, E. A., Tenesa, A., Andersson, R., Brown, J. B., Faulkner, G. J., Lizio, M., Schaefer, U., Daub, C., Itoh, M., Kondo, N., Lassmann, T., Kawai, J., Mole, D. & 14 others, , 2018, In: PLoS Computational Biology. 14, 3, 24 p., e1005934.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Endogenous retroviruses co-opted as divergently transcribed regulatory elements shape the regulatory landscape of embryonic stem cells
Bakoulis, Stylianos, Krautz, Robert, Alcaraz, N., Salvatore, Marco & Andersson, Robin, 2022, In: Nucleic acids symposium series. 50, 4, p. 2111-2127 17 p., 088.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
On the origin of regulatory elements: Computational analyses of transposable elements in pluripotency and development
Bakoulis, Stylianos, 2023, Department of Biology, Faculty of Science, University of Copenhagen. 135 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
African bushpigs exhibit porous species boundaries and appeared in Madagascar concurrently with human arrival
Balboa, R. F., Bertola, L. D., Brüniche-Olsen, A., Rasmussen, M. S., Liu, X., Besnard, G., Salmona, J., Santander, C. G., He, S., Zinner, D., Pedrono, M., Muwanika, V., Masembe, C., Schubert, M., Kuja, J., Quinn, L., Garcia-Erill, G., Stæger, F. F., Rakotoarivony, R., Henrique, M. & 14 others, , 2024, In: Nature Communications. 15, 1, 15 p., 172.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Diversity and transboundary mobility of serotype O foot-and-mouth disease virus in East Africa: implications for vaccination policies
Balinda, S., Sangula, A. K., Heller, Rasmus, Muwanika, V. B., Belsham, G., Masembe, C. & Siegismund, Hans Redlef, 1 Oct 2010, In: Infection, Genetics and Evolution. 10, 7, p. 1058-65 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Molecular characterization of SAT 2 foot-and-mouth disease virus from post-outbreak slaughtered animals: implications for disease control in Uganda
Balinda, S., Belsham, G., Masembe, C., Sangula, A. K., Siegismund, Hans Redlef & Muwanika, V. B., 1 Aug 2010, In: Epidemiology and Infection. 138, 8, p. 1204-10 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Phylogenetic analyses of the polyprotein coding sequences of serotype O foot-and-mouth disease viruses in East Africa: evidence for interserotypic recombination
Balinda, S. N., Siegismund, Hans Redlef, Muwanika, V. B., Sangula, A. K., Masembe, C., Ayebazibwe, C., Normann, P. & Belsham, G. J., 2010, In: Virology Journal. 7, p. 199Research output: Contribution to journal › Journal article › Research › peer-review
- Published
UPF2-dependent nonsense-mediated mRNA decay pathway is essential for spermatogenesis by selectively eliminating longer 3'UTR transcripts
Bao, J., Vitting-Seerup, K., Waage, J. E., Tang, C., Ge, Y., Porse, Bo Torben & Yan, W., 2016, In: P L o S Genetics. 12, 5, 24 p., e1005863.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Diverse bacterial genomes encode an operon of two genes, one of which is a unusual class-I release factor that potentially recognizes atypical mRNA signals other than normal stop codons
Baranov, P., Vestergaard, Bente, Hamelryck, Thomas Wim, Gesteland, Nyborg, J. & Atking, J., 2006, In: Biology Direct. 13, p. 1-28 28 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genome sequence and effectorome of Moniliophthora perniciosa and Moniliophthora roreri subpopulations
Barbosa, C. S., Rodrigues da Fonseca, Rute Andreia, Batista, T. M., Barreto, M. A., Argolo, C. S., de Carvalho, M. R., Jordao do Amaral, D. O., de Andrade Silva, E. M., Arevalo-Gardini, E., Hidalgo, K. S., Franco, G. R., Pirovani, C. P., Micheli, F. & Gramacho, K. P., 3 Jul 2018, In: BMC Genomics. 19, 12 p., 509.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Heat-shock protein 40 is the key farnesylation target in meristem size control, abscisic acid signaling, and drought resistance
Barghetti, A., Sjögren, L. L. E., Floris, M. H. J., Botterweg Paredes, E., Wenkel, Stephan & Brodersen, Peter, 15 Nov 2017, In: Genes & Development. 31, 22, p. 2282-2295 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Investigating membrane-bound Argonaute functions in Arabidopsis
Barghetti, A., 2017, Department of Biology, Faculty of Science, University of Copenhagen.Research output: Book/Report › Ph.D. thesis › Research
- Published
CCHMM_PROF: a HMM-based coiled-coil predictor with evolutionary information
Bartoli, L., Fariselli, P., Krogh, Anders & Casadio, R., 2009, In: Bioinformatics. 25, 21, p. 2757-63 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Inference of purifying and positive selection in three subspecies of chimpanzees (Pan troglodytes) from exome sequencing
Bataillon, T., Duan, J., Hvilsom, C., Jin, X., Li, Y., Skov, L., Glemin, S., Munch, K., Jiang, T., Qian, Y., Hobolth, A., Wang, J., Mailund, T., Siegismund, Hans Redlef & Schierup, M. H., 2015, In: Genome Biology and Evolution. 7, 4, p. 1122-1132 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Proteomic Profiling of Colorectal Adenomas Identifies a Predictive Risk Signature for Development of Metachronous Advanced Colorectal Neoplasia
Bech, J. M., Terkelsen, Thilde Bagger, Bartels, Annette Snejbjerg, Coscia, F., Doll, S., Zhao, S., Zhang, Z., Brünner, N., Lindebjerg, J., Madsen, G. I., Fang, X., Mann, Matthias & Moreira, José, 2023, In: Gastroenterology. 165, 1, p. 121-132.e5Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Guidelines for evaluating the conservation value of African lion (Panthera leo) translocations
Becker, M. S., Almeida, J., Begg, C., Bertola, L., Breitenmoser, C., Breitenmoser, U., Coals, P., Funston, P., Gaylard, A., Groom, R., Henschel, P., Ikanda, D., Jorge, A., Kruger, J., Lindsey, P., Maimbo, H., Mandisodza-Chikerema, R., Maude, G., Mbizah, M., Miller, S. M. & 17 others, , 2022, In: Frontiers in Conservation Science. 3, 13 p., 963961.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Toxin inhibition in C. crescentus VapBC1 is mediated by a flexible pseudo-palindromic protein motif and modulated by DNA binding
Bendtsen, K. L., Xu, K., Luckmann, M., Winther, K. S., Shah, S. A., Pedersen, C. N. S. & Brodersen, D. E., 2017, In: Nucleic Acids Research. 45, 5, p. 2875-2886 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Grey wolf genomic history reveals a dual ancestry of dogs
Bergström, A., Stanton, D. W. G., Taron, U. H., Frantz, L., Sinding, M. H. S., Ersmark, E., Pfrengle, S., Cassatt-Johnstone, M., Lebrasseur, O., Girdland-Flink, L., Fernandes, D. M., Ollivier, M., Speidel, L., Gopalakrishnan, S., Westbury, M. V., Ramos-Madrigal, J., Feuerborn, T. R., Reiter, E., Gretzinger, J., Münzel, S. C. & 61 others, , 2022, In: Nature. 607, 7918, p. 313-320Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genetic guidelines for translocations: Maintaining intraspecific diversity in the lion (Panthera leo)
Bertola, Laura, Miller, S. M., Williams, V. L., Naude, V. N., Coals, P., Dures, S. G., Henschel, P., Chege, M., Sogbohossou, E. A., Ndiaye, A., Kiki, M., Gaylard, A., Ikanda, D. K., Becker, M. S. & Lindsey, P., 2022, In: Evolutionary Applications. 15, 1, p. 22-39 18 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A pragmatic approach for integrating molecular tools into biodiversity conservation
Bertola, L. D., Brüniche-Olsen, A., Kershaw, F., Russo, I. R. M., MacDonald, A. J., Sunnucks, P., Bruford, M. W., Cadena, C. D., Ewart, K. M., de Bruyn, M., Eldridge, M. D. B., Frankham, R., Guayasamin, J. M., Grueber, C. E., Hoareau, T. B., Hoban, S., Hohenlohe, P. A., Hunter, M. E., Kotze, A., Kuja, J. & 21 others, , 2024, In: Conservation Science and Practice. 6, 1, 15 p., e13053.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Giraffe lineages are shaped by major ancient admixture events
Bertola, L. D., Quinn, L., Hanghøj, K., Garcia-Erill, G., Rasmussen, M. S., Balboa, R. F., Meisner, J., Bøggild, T., Wang, X., Lin, L., Nursyifa, C., Liu, X., Li, Z., Chege, M., Moodley, Y., Brüniche-Olsen, A., Kuja, J., Schubert, M., Agaba, M., Santander, C. G. & 7 others, , 2024, In: Current Biology. 34, 7, p. 1576-1586.e5 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Novel variation and de novo mutation rates in population-wide de novo assembled Danish trios
Besenbacher, S., Liu, S., Gonzalez-Izarzugaza, J. M., Grove, J., Belling, K. G., Bork-Jensen, J., Huang, S., Als, T. D., Li, S., Yadav, R., Rubio García, A., Lescai, F., Demontis, D., Rao, J., Ye, W., Mailund, T., Møllegaard Friborg, R., Pedersen, C. N. S., Xu, R., Sun, J. & 27 others, , 2015, In: Nature Communications. 6, 9 p., 5969.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A perspective on inverse design of battery interphases using multi-scale modelling, experiments and generative deep learning
Bhowmik, A., Castelli, I. E., Garcia-Lastra, J. M., Bjørn-Jørgensen, P., Winther, Ole & Vegge, T., 2019, In: Energy Storage Materials. 21, p. 446-456Research output: Contribution to journal › Review › Research › peer-review
- Published
Cardiovascular autonomic neuropathy and the impact on progression of diabetic kidney disease in type 1 diabetes
Bjerre-Christensen, T., Winther, S. A., Tofte, N., Theilade, S., Ahluwalia, Tarun Veer Singh, Lajer, M., Hansen, T. W., Rossing, Peter & Hansen, C. S., 2021, In: B M J Open Diabetes Research & Care. 9, 1, 9 p., e002289.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Rapid protein stability prediction using deep learning representations
Blaabjerg, Lasse Møller, Kassem, M. M., Good, L. L., Jonsson, Nicolas, Cagiada, Matteo, Johansson, Kristoffer Enøe, Boomsma, Wouter, Stein, Amelie & Lindorff-Larsen, Kresten, 2023, In: eLife. 12, 19 p., e82593.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The endangered White Sands pupfish (Cyprinodon tularosa) genome reveals low diversity and heterogenous patterns of differentiation
Black, A. N., Willoughby, J. R., Brüniche-Olsen, Anna, Pierce, B. L. & DeWoody, J. A., 2021, In: Molecular Ecology Resources. 21, 7, p. 2520-2532 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Reconstructing genome evolution in historic samples of the Irish potato famine pathogen
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Natural selection affects multiple aspects of genetic variation at putatively peutral sites across the human genome
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True single-molecule DNA sequencing of a pleistocene horse bone
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