Computational and RNA Biology

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  1. 2007
  2. Published

    Radiation and speciation of pelagic organisms during periods of global warming: the case of the common minke whale, Balaenoptera acutorostrata

    Pastene, L. A., Goto, M., Kanda, N., Zerbini, A. N., Kerem, D., Watanabe, K., Bessho, Y., Hasegawa, M., Nielsen, Rasmus, Larsen, F. & Palsbøll, P. J., 2007, In: Molecular Ecology. 16, 7, p. 1481-1495 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Regulation of dCTP deaminase from Escherichia coli by nonallosteric dTTP binding to an inactive form of the enzyme

    Johansson, E., Thymark, M., Bynck, J. H., Fanø, M., Larsen, Sine & Willemoës, Martin, 2007, In: FEBS Journal. 274, 16, p. 4188-4198 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Structural and enzymatic investigation of the Sulfolobus solfataricus uridylate kinase shows competitive UTP inhibition and the lack of GTP stimulation.

    Jensen, K. S., Johansson, E. & Jensen, K. F., 2007, In: Biochemistry. 46, 10, p. 2745-57 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Studies of the common DIO2 Thr92Ala polymorphism and metabolic phenotypes in 7342 Danish white subjects

    Grarup, Niels, Lepola, Mette Andersen, Andreasen, C. H., Albrechtsen, Anders, Borch-Johnsen, K., Jørgensen, T., Auwerx, J., Schmitz, O., Hansen, Torben & Pedersen, Oluf Borbye, 2007, In: Journal of Clinical Endocrinology and Metabolism. 92, 1, p. 363-6 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Tanimoto's Best Barbecue: Discovering Regulatory Modules using Tanimoto Scores

    Menzel, K. P., Mosig, A. & Stadler, P. F., 2007, Lecture Notes in Informatics: Proceedings of the German Conference on Bioinformatics 2007. Falter, C., Schliep, A., Selbig, J. & Walther, M. V. A. (eds.). p. 68-77 10 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  7. Published

    The GCKR rs780094 polymorphism is associated with elevated fasting serum triacylglycerol, reduced fasting and OGTT-related insulinaemia, and reduced risk of type 2 diabetes

    Sparsø, T., Andersen, G., Nielsen, T., Burgdorf, K. S., Gjesing, A. M. P., Nielsen, A. L., Albrechtsen, Anders, Rasmussen, S. S., Jørgensen, T., Borch-Johnsen, K., Sandbaek, A., Lauritzen, T., Madsbad, Sten, Hansen, Torben & Pedersen, Oluf Borbye, 2007, In: Diabetologia. 51, 1, p. 70-5 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    X-ray scattering and electron cryomicroscopy study on the effect of carotenoid biosynthesis to the structure of Chlorobium tepidum chlorosomes

    Ikonen, T. P., Li, H., Psencík, J., Laurinmäki, P. A., Butcher, S. J., Frigaard, Niels-Ulrik, Serimaa, R. E., Bryant, D. A. & Tuma, R., 2007, In: Biophysical Journal. 93, 2, p. 620-628 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Bioinformatic and experimental analysis of the secondary structure of amelogenin

    Vilhjalmsson, B., Rasmussen, Anne, Fabi, B., van de Weert, Marco, Hamelryck, Thomas Wim & Lemoult, S., 1 Nov 2007, In: European Cells and Materials. 14, SUPPL.2, 1 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. 2008
  11. Published

    A generative, probabilistic model of local protein structure

    Boomsma, Wouter, Mardia, K. V., Taylor, C. C., Ferkinghoff-Borg, J., Krogh, Anders & Hamelryck, Thomas Wim, 2008, In: Proceedings of the National Academy of Science of the United States of America. 105, 26, p. 8932-8937 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    A genetic analysis of carbon-nanotube-binding proteins

    Brown, Stanley, Jespersen, T. S. & Nygård, Jesper, 2008, In: Small. 4, 4, p. 416-420

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Asap: a framework for over-representation statistics for transcription factor binding sites.

    Marstrand, T. T., Frellsen, J., Moltke, Ida, Thiim, M., Valen, E., Retelska, D. & Krogh, Anders, 2008, In: PLoS ONE. 3, 2, p. e1623

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Association testing of novel type 2 diabetes risk alleles in the JAZF1, CDC123/CAMK1D, TSPAN8, THADA, ADAMTS9, and NOTCH2 loci with insulin release, insulin sensitivity, and obesity in a population-based sample of 4,516 glucose-tolerant middle-aged Danes.

    Grarup, Niels, Andersen, G., Krarup, N. T., Albrechtsen, Anders, Schmitz, O., Jørgensen, T., Borch-Johnsen, K., Hansen, Torben & Pedersen, Oluf Borbye, 2008, In: Diabetes. 57, 9, p. 2534-40 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Embryonic expression of Drosophila IMP in the developing CNS and PNS

    Adolph, S. K., Delotto, R., Nielsen, Finn Cilius & Christiansen, Jan, 2008, In: Gene Expression Patterns. 9, 3, p. 138-143 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Expression, purification and preliminary diffraction studies of PhnP

    Podzelinska, K., He, S., Soares, A., Zechel, D., Hove-Jensen, B. & Jia, Z., 2008, In: Acta Crystallographica. Section F : Structural Biology and Crystallization Communications. 64, Pt 6, p. 554-7 3 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Fast phylogenetic DNA barcoding

    Terkelsen, K. M., Boomsma, Wouter, Willerslev, Eske & Nielsen, Rasmus, 2008, In: Philosophical Transactions of the Royal Society of London. Biological Sciences. 363, 1512, p. 3997-4002 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Genomic Insights into the Sulfur Metabolism of Phototrophic Green Sulfur Bacteria

    Frigaard, Niels-Ulrik & Bryant, D. A., 2008, In: Advances in Photosynthesis and Respiration. 27, p. 337-355 18 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Genomic and Evolutionary Perspectives on Sulfur Metabolism in Green Sulfur Bacteria

    Frigaard, Niels-Ulrik & Bryant, D. A., 2008, Microbial Sulfur Metabolism. Springer, p. 60-76 16 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research

  20. Published

    Hidden Markov models for prediction of protein features.

    Bystroff, C. & Krogh, Anders, 2008, In: Methods in Molecular Biology. 413, p. 173-98 25 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Identification of the bchP gene, encoding geranylgeranyl reductase in Chlorobaculum tepidum

    Gomez Maqueo Chew, A., Frigaard, Niels-Ulrik & Bryant, D. A., 2008, In: Journal of Bacteriology. 190, 2, p. 747-749 3 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Impact of polymorphisms in WFS1 on prediabetic phenotypes in a population-based sample of middle-aged people with normal and abnormal glucose regulation

    Sparsø, T., Andersen, G., Albrechtsen, Anders, Jørgensen, T., Borch-Johnsen, K., Sandbaek, A., Lauritzen, T., Wasson, J., Permutt, M. A., Glaser, B., Madsbad, Sten, Pedersen, Oluf Borbye & Hansen, Torben, 2008, In: Diabetologia. 51, 9, p. 1646-52 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    In vivo and in vitro studies of the neuronal RNA-binding protein Drosophila IMP

    Adolph, S. K., 2008, Biologisk Institut: Museum Tusculanum. 144 p.

    Research output: Book/Report › Ph.D. thesis › Research

  24. Published

    Low physical activity accentuates the effect of the FTO rs9939609 polymorphism on body fat accumulation

    Andreasen, C. H., Stender-Petersen, K. L., Mogensen, M. S., Torekov, Signe Sørensen, Wegner, L., Andersen, G., Nielsen, A. L., Albrechtsen, Anders, Borch-Johnsen, K., Rasmussen, S. S., Clausen, J. O., Sandbaek, A., Lauritzen, T., Hansen, L., Jørgensen, T., Pedersen, Oluf Borbye & Hansen, T., 2008, In: Diabetes. 57, 1, p. 95-101 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Mechanism of dTTP inhibition of the bifunctional dCTP deaminase:dUTPase encoded by Mycobacterium tuberculosis

    Helt, S. S., Thymark, M., Harris, P., Aagaard, C., Dietrich, J., Larsen, Sine & Willemoës, Martin, 2008, In: Journal of Molecular Biology. 376, 2, p. 554-69 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    Protein Decoy Generation Using Branch and Bound with Efficient Bounding

    Paluszewski, M. & Winter, Pawel, 2008, Algorithms in Bioinformatics: 8th International Workshop, WABI 2008, Karlsruhe, Germany, September 15-19, 2008, Proceedings. Crandall, K. A. & Lagergren, J. (eds.). Springer, p. 382-393 12 p. (Lecture Notes in Computer Science : Lecture Notes in Bioinformatics; No. 5251).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  27. Published

    Protein Structure Prediction Using Bee Colony Optimization Metaheuristic: Extended Abstract

    Fonseca, R., Paluszewski, M. & Winter, Pawel, 2008, In: Koebenhavns Universitet. Datalogisk Institut. Rapport. 12, 11 p.

    Research output: Contribution to journal › Conference abstract in journal › Research

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