Computational and RNA Biology

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  1. Published

    Genomic insights into the origin and diversification of late maritime hunter-gatherers from the Chilean Patagonia

    De la Fuente, C., Avila-Arcos, M. C., Galimany, J., Carpenter, M. L., Homburger, J. R., Blanco, A., Contreras, P., Davalos, D. C., Reyes, O., Roman, M. S., Moreno-Estrada, A., Campos, P., Eng, C., Huntsman, S., Burchard, E. G., Malaspinas, A-S., Bustamante, C. D., Willerslev, E., Llop, E., Verdugo, R. A. & 1 others, Moraga, M., 2018, In: Proceedings of the National Academy of Sciences of the United States of America. 115, 17, p. E4006-E4012 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  2. Published

    Co-Chaperones in Targeting and Delivery of Misfolded Proteins to the 26S Proteasome

    Abildgaard, A. B., Andersen, Sarah Gersing, Larsen-Ledet, Sven, Nielsen, S. V., Stein, Amelie, Lindorff-Larsen, Kresten & Hartmann-Petersen, Rasmus, 2020, In: Biomolecules. 10, 8, 24 p., 1141.

    Research output: Contribution to journal › Review › Research › peer-review

  3. Published

    Computational and cellular studies reveal structural destabilization and degradation of MLH1 variants in Lynch syndrome

    Abildgaard, A. B., Stein, Amelie, Nielsen, S. V., Schultz-Knudsen, Katrine, Papaleo, E., Shrikhande, A., Hoffmann, Eva, Bernstein, I., Gerdes, Anne-Marie Axø, Takahashi, M., Ishioka, C., Lindorff-Larsen, Kresten & Hartmann-Petersen, Rasmus, 2019, In: eLife. 8, 28 p., e49138 .

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Age-associated DNA methylation changes in immune genes, histone modifiers and chromatin remodeling factors within 5 years after birth in human blood leukocytes

    Acevedo, N., Reinius, L. E., Vitezic, M., Fortino, V., Söderhäll, C., Honkanen, H., Veijola, R., Simell, O., Toppari, J., Ilonen, J., Knip, M., Scheynius, A., Hyöty, H., Greco, D. & Kere, J., 2015, In: Clinical Epigenetics. 7, 20 p., 34.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Fitness consequences of nest infiltration by the mutualist-exploiter Megalomyrmex adamsae

    Adams, R. M. M., Shah, K., Antonov, L. D. & Mueller, U. G., 2012, In: Ecological Entomology. 37, 6, p. 453-462 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    In vivo and in vitro studies of the neuronal RNA-binding protein Drosophila IMP

    Adolph, S. K., 2008, Biologisk Institut: Museum Tusculanum. 144 p.

    Research output: Book/Report › Ph.D. thesis › Research

  7. Published

    Embryonic expression of Drosophila IMP in the developing CNS and PNS

    Adolph, S. K., Delotto, R., Nielsen, Finn Cilius & Christiansen, Jan, 2008, In: Gene Expression Patterns. 9, 3, p. 138-143 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update

    Afgan, E., Nekrutenko, A., Grüning, B. A., Blankenberg, D., Goecks, J., Schatz, M. C., Ostrovsky, A. E., Mahmoud, A., Lonie, A. J., Syme, A., Fouilloux, A., Bretaudeau, A., Nekrutenko, A., Kumar, A., Eschenlauer, A. C., Desanto, A. D., Guerler, A., Serrano-Solano, B., Batut, B., Grüning, B. A. & 85 others, Langhorst, B. W., Carr, B., Raubenolt, B. A., Hyde, C. J., Bromhead, C. J., Barnett, C. B., Royaux, C., Gallardo, C., Blankenberg, D., Fornika, D. J., Baker, D., Bouvier, D., Clements, D., De Lima Morais, D. A., Tabernero, D. L., Lariviere, D., Nasr, E., Afgan, E., Zambelli, F., Heyl, F., Psomopoulos, F., Coppens, F., Price, G. R., Cuccuru, G., Corguillé, G. L., Von Kuster, G., Akbulut, G. G., Rasche, H., Hans-Rudolf, H., Eguinoa, I., Makunin, I., Ranawaka, I. J., Taylor, J. P., Joshi, J., Hillman-Jackson, J., Chilton, J. M., Kamali, K., Suderman, K., Poterlowicz, K., Yvan, L. B., Lopez-Delisle, L., Sargent, L., Bassetti, M. E., Tangaro, M. A., Van Den Beek, M., Cech, M., Bernt, M., Fahrner, M., Tekman, M., Föll, M. C., Schatz, M. C., Crusoe, M. R., Roncoroni, M., Kucher, N., Coraor, N., Stoler, N., Rhodes, N., Soranzo, N., Pinter, N., Goonasekera, N. A., Moreno, P. A., Videm, P., Melanie, P., Mandreoli, P., Jagtap, P. D., Gu, Q., Weber, R. J. M., Lazarus, R., Vorderman, R. H. P., Hiltemann, S., Golitsynskiy, S., Garg, S., Bray, S. A., Gladman, S. L., Leo, S., Mehta, S. P., Griffin, T. J., Jalili, V., Yves, V., Wen, V., Nagampalli, V. K., Bacon, W. A., De Koning, W., Maier, W. & Briggs, P. J., 2022, In: Nucleic Acids Research. 50, W1, p. W345-W351 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Circulating Free Fatty Acid and Phospholipid Signature Predicts Early Rapid Kidney Function Decline in Patients With Type 1 Diabetes

    Afshinnia, F., Rajendiran, T. M., He, C., Byun, J., Montemayor, D., Darshi, M., Tumova, J., Kim, J., Limonte, C. P., Miller, R. G., Costacou, T., Orchard, T. J., Ahluwalia, Tarun Veer Singh, Rossing, Peter, Snell-Bergeon, J. K., de Boer, I. H., Natarajan, L., Michailidis, G., Sharma, K. & Pennathur, S., 2021, In: Diabetes Care. 44, 9, p. 2098-2106 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    PLZF targets developmental enhancers for activation during osteogenic differentiation of human mesenchymal stem cells

    Agrawal-Singh, S., Lerdrup, Mads, Gomes, A. R., van de Werken, H. J. G., Johansen, Jens Vilstrup, Andersson, Robin, Sandelin, Albin Gustav, Helin, K. & Hansen, K., 2019, In: eLife. 8, p. 1-32 32 p., e40364.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Genome wide association study of circulating interleukin 6 levels identifies novel loci

    Ahluwalia, T. S., Armstrong, N. J., Aslibekyan, S., Beekman, M., Cheng, Y., deGeus, E., Delgado, G. E., Marek, D., Kanoni, S., Nolte, I. M., Porcu, E., Seppala, I., Standl, M., Teumer, A., Thalamuthu, A., Trompet, S., Benjamin, E. J., Feitosa, M. F., Homuth, G., Lahti, J. & 30 others, Liu, Y., Timpson, N. J., Visvikis-Siest, S., Voelker, U., Baune, B. T., Boomsma, D., Deary, I. J., Evans, D. M., Ferreira, M. A., Gaunt, T., Gudnason, V., Hamsten, A., Humphries, S. E., Koeing, W., Kumari, M., Lawlor, D. A., Nauck, M., Price, J. F., Sørensen, Thorkild I.A., Stacey, D., Stathopoulou, M. G., Tanaka, T., Wannamethee, S. G., Rotter, J. I., Dehghan, A., Boerwinkle, E., Sneider, H., Psaty, B. M., Prins, B. P. & Alizadeh, B. Z., 2020, In: European Journal of Human Genetics. 28, Supplement 1, p. 307-308 2 p.

    Research output: Contribution to journal › Conference abstract in journal › Research › peer-review

  12. Published

    FUT2–ABO epistasis increases the risk of early childhood asthma and Streptococcus pneumoniae respiratory illnesses

    Ahluwalia, T. S., Eliasen, A. U., Sevelsted, A., Pedersen, C-E. T., Stokholm, J., Chawes, B., Bork-Jensen, J., Grarup, N., Pedersen, O., Hansen, T., Linneberg, A., Sharma, A., Weiss, S. T., Evans, M. D., Jackson, D. J., Morin, A., Krogfelt, K. A., Schjørring, S., Mortensen, P. B., Hougaard, D. M. & 13 others, Bybjerg-Grauholm, J., Bækvad-Hansen, M., Mors, O., Nordentoft, Merete, Børglum, A. D., Werge, Thomas, Agerbo, E., Gern, J. E., Lemanske, R. F., Ober, C., Pedersen, A. G., Bisgaard, H. & Bønnelykke, Klaus, 2020, In: Nature Communications. 11, 12 p., 6398.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Lack of the Major Multifunctional Catalase KatA in Pseudomonas aeruginosa Accelerates Evolution of Antibiotic Resistance in Ciprofloxacin-Treated Biofilms

    Ahmed, M. N., Porse, A., Abdelsamad, A., Sommer, M., Høiby, Niels & Ciofu, Oana, 2019, In: Antimicrobial Agents and Chemotherapy. 63, 10, 12 p., e00766-19.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    A structural biology community assessment of AlphaFold2 applications

    Akdel, M., Pires, D. E., Porta Pardo, E., Jänes, J., Zalevsky, A. O., Meszaros, B., Bryant, P., Good, L. L., Laskowski, R. A., Pozzati, G., Shenoy, A., Zhu, W., Kundrotas, P., Serra, V. R., Rodrigues, C. H. M., Dunham, A. S., Burke, D., Borkakoti, N., Velankar, S., Frost, A. & 14 others, Basquin, J., Lindorff-Larsen, Kresten, Bateman, A., Kajava, A., Valencia, A., Ovchinnikov, S., Durairaj, J., Ascher, D. B., Thornton, J. M., Davey, N. E., Stein, Amelie, Elofsson, A., Croll, T. & Beltrao, P., 2022, In: Nature Structural & Molecular Biology. 29, 11, 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Probabilistic Programming for Voucher Information Extraction: Preliminary Practical Experiences

    Al-Sibahi, A. S., Hamelryck, Thomas Wim & Henglein, Fritz, 2018.

    Research output: Contribution to conference › Poster › Research

  16. Published

    Comparative transcriptomics of primary cells in vertebrates

    Alam, T., Agrawal, S., Severin, J., Young, R. S., Andersson, R., Arner, E., Hasegawa, A., Lizio, M., Ramilowski, J. A., Abugessaisa, I., Ishizu, Y., Noma, S., Tarui, H., Taylor, M. S., Lassmann, T., Itoh, M., Kasukawa, T., Kawaji, H., Marchionni, L., Sheng, G. & 5 others, Forrest, A. R. R., Khachigian, L. M., Hayashizaki, Y., Carninci, P. & de Hoon, M. J. L., 2020, In: Genome Research. 30, 7, p. 951-961 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Natural selection and the distribution of identity-by-descent in the human genome

    Albrechtsen, Anders, Moltke, Ida & Nielsen, Rasmus, 2010, In: Genetics. 186, 1, p. 295-308 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Exome sequencing-driven discovery of coding polymorphisms associated with common metabolic phenotypes

    Albrechtsen, A., Grarup, N., Li, Y., Sparsø, T. H., Tian, G., Cao, H., Jiang, T., Kim, S. Y., Korneliussen, T. S., Li, Q., Nie, C., Wu, R., Skotte, L., Morris, A. P., Ladenvall, C., Cauchi, S., Stancáková, A., Andersen, G., Astrup, A., Banasik, K. & 86 others, Bennett, A. J., Bolund, L., Charpentier, G., Chen, Y., Dekker, J. M., Doney, A. S. F., Dorkhan, M., Forsen, T., Frayling, T. M., Groves, C. J., Gui, Y., Hallmans, G., Hattersley, A. T., He, K., Hitman, G. A., Holmkvist, J., Huang, S., Jiang, H., Jin, X., Justesen, Johanne Marie, Kristiansen, Karsten, Kuusisto, J., Lajer, M., Lantieri, O., Li, W., Liang, H., Liao, Q., Liu, X., Ma, T., Ma, X., Manijak, M. P., Marre, M., Mokrosinski, J., Morris, A. D., Mu, B., Nielsen, A. A., Nijpels, G., Nilsson, P., Palmer, C. N. A., Rayner, N. W., Renström, F., Ribel-Madsen, R., Robertson, N., Rolandsson, O., Rossing, P., Schwartz, Thue W., Slagboom, P. E., Sterner, M., Tang, M., Tarnow, L., Tuomi, T., Van't Riet, E., van Leeuwen, N., V Varga, Tibor, Vestmar, M. A., Walker, M., Wang, B., Wang, Y., Wu, H., Xi, F., Yengo, L., Yu, C., Zhang, X., Zhang, J., Zhang, Q., Zhang, W., Zheng, H., Zhou, Y., Altshuler, D., 't Hart, L. M., Franks, P. W., Balkau, B., Froguel, P., McCarthy, M. I., Laakso, M., Groop, L., Christensen, C., Brandslund, I., Lauritzen, T., Witte, D. R., Linneberg, A., Jørgensen, T., Hansen, Torben, Wang, J., Nielsen, Rasmus & Pedersen, Oluf Borbye, 2013, In: Diabetologia. 56, 2, p. 298-310 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Relatedness mapping and tracts of relatedness for genome-wide data in the presence of linkage disequilibrium

    Albrechtsen, Anders, Korneliussen, Thorfinn Sand, Moltke, Ida, van Overseem Hansen, T., Nielsen, Finn Cilius & Nielsen, Rasmus, 2009, In: Genetic Epidemiology. 33, 3, p. 266-274

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Methods for fighting emerging pathogens

    Alcantara, L. C. J., Amenga-Etego, L., Andersson, Robin, Bhaumik, M., Choi, Y. K., Decaluwe, H., Geoghegan, J., Haagmans, B. L., López, S., Mukhtar, M. M., Nelwan, E., Rahal, E. A., Sato, K., Sklan, E. H. & Fang, Y. S. C., 2022, In: Nature Methods. 19, 4, p. 395-397 3 p.

    Research output: Contribution to journal › Comment/debate › Research › peer-review

  21. Published

    De novo pathway-based biomarker identification

    Alcaraz, N., List, M., Batra, R., Vandin, F., Ditzel, H. J. & Baumbach, J., 19 Sep 2017, In: Nucleic Acids Research. 45, 16, 11 p., e151.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    De Novo Pathway Enrichment with KeyPathwayMiner

    Alcaraz, N., Hartebrodt, A. & List, M., 2020, Protein-Protein Interaction Networks: Methods and Protocols. Canzar, S. & Ringeling, F. R. (eds.). Humana Press, p. 181-199 19 p. (Methods in Molecular Biology, Vol. 2074).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  23. Published

    Characterizing leader sequences of CRISPR loci

    Alkhnbashi, O., Shah, S. A., Garrett, Roger Antony, Saunders, S. J., Costa, F. & Backofen, R., 2016, In: Bioinformatics. 32, 17, p. i576-i585 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Extinct New Zealand megafauna were not in decline before human colonization

    Allentoft, Morten Erik, Heller, Rasmus, Oskam, C. L., Lorenzen, Eline, Hale, M. L., Gilbert, M Thomas P, Jacomb, C., Holdaway, R. N. & Bunce, M., 2014, In: Proceedings of the National Academy of Sciences USA (PNAS). 111, 13, p. 4922-4927 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Ancient DNA microsatellite analyses of the extinct New Zealand giant moa (Dinornis robustus) identify relatives within a single fossil site

    Allentoft, Morten Erik, Heller, Rasmus, Holdaway, R. N. & Bunce, M., 2015, In: Heredity. 115, p. 481-487 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    Detecting sequence signals in targeting peptides using deep learning

    Almagro Armenteros, J. J., Salvatore, Marco, Emanuelsson, O., Winther, Ole, von Heijne, G., Elofsson, A. & Nielsen, H., 2019, In: Life Science Alliance. 2, 5, 14 p., 201900429.

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    DeepLoc: prediction of protein subcellular localization using deep learning

    Almagro Armenteros, J. J., Sønderby, C. K., Sønderby, S. K., Nielsen, H. & Winther, Ole, 1 Nov 2017, In: Bioinformatics. 33, 21, p. 3387-3395 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    Genetic evidence for migration of males between schools of the long finned pilot whale, Globicephala melas.

    Andersen, L. W. & Siegismund, Hans Redlef, 1994, In: Marine Ecology - Progress Series. 105, p. 1-7

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    The derived allele of a novel intergenic variant at chromosome 11 associates with lower body mass index and a favorable metabolic phenotype in Greenlanders

    Andersen, M. K., Jørsboe, E., Skotte, L., Hanghøj, K., Sandholt, C. H., Moltke, I., Grarup, N., Kern, T., Mahendran, Y., Søborg, B., Bjerregaard, P., Larsen, C. V. L., Dahl-Petersen, I. K., Tiwari, H. K., Feenstra, B., Koch, A., Wiener, H. W., Hopkins, S. E., Pedersen, O., Melbye, M. & 4 others, Boyer, B. B., Jørgensen, M. E., Albrechtsen, Anders & Hansen, Torben, 2020, In: PLOS Genetics. 16, 1, 17 p., e1008544.

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    Loss of sucrase-isomaltase function increases acetate levels and improves metabolic health in Greenlandic cohorts

    Andersen, M. K., Skotte, L., Jørsboe, E., Polito, R., Stæger, F. F., Aldiss, P., Hanghøj, K., Waples, R. K., Santander, C. G., Grarup, N., Dahl-Petersen, I. K., Diaz, L. J., Overvad, M., Senftleber, N. K., Søborg, B., Larsen, C. V. L., Lemoine, C., Pedersen, O., Feenstra, B., Bjerregaard, P. & 9 others, Melbye, M., Jørgensen, M. E., Færgeman, N. J., Koch, A., Moritz, Thomas, Gillum, M. P., Moltke, Ida, Hansen, Torben & Albrechtsen, Anders, 2022, In: Gastroenterology. 162, 4, p. 1171-1182.e3

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    Genetics of Type 2 diabetes: the power of isolated populations

    Lepola, Mette Andersen, Pedersen, C. T., Moltke, Ida, Hansen, Torben, Albrechtsen, Anders & Grarup, Niels, 2016, In: Current Diabetes Reports. 16, 7, 9 p., 65.

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    Identification of novel genetic determinants of erythrocyte membrane fatty acid composition among Greenlanders

    Lepola, Mette Andersen, Jørsboe, E., Sandholt, C. H., Grarup, Niels, Jørgensen, M. E., Færgeman, N. J., Bjerregaard, P., Pedersen, Oluf Borbye, Moltke, Ida, Hansen, Torben & Albrechtsen, Anders, 2016, In: P L o S Genetics. 12, 6, 19 p., e1006119.

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    Genetic architecture of obesity and related metabolic traits - recent insights from isolated populations

    Lepola, Mette Andersen, Grarup, Niels, Moltke, Ida, Albrechtsen, Anders & Hansen, Torben, 2018, In: Current Opinion in Genetics and Development. 50, p. 74-78 5 p.

    Research output: Contribution to journal › Review › Research › peer-review

  34. Published

    Nuclear stability and transcriptional directionality separate functionally distinct RNA species

    Andersson, Robin, Refsing Andersen, P., Valen, E., Core, L. J., Lange, Jette Bornholdt, Boyd, M., Jensen, T. H. & Sandelin, Albin Gustav, 2014, In: Nature Communications. 5, 10 p., 5336.

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    Promoter or enhancer, what's the difference? Deconstruction of established distinctions and presentation of a unifying model

    Andersson, Robin, 2015, In: BioEssays. 37, 3, p. 314-323 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    An atlas of active enhancers across human cell types and tissues

    Andersson, R., Gebhard, C., Miguel-Escalada, I., Hoof, I., Lange, J. B., Boyd, M., Chen, Y., Zhao, X., Schmidl, C., Suzuki, T., Ntini, E., Arner, E., Valen, E., Li, K., Schwarzfischer, L., Glatz, D., Raithel, J., Lilje, B., Rapin, N., Bagger, F. O. & 30 others, Jørgensen, M., Andersen, P. R., Bertin, N., Rackham, O., Burroughs, A. M., Baillie, J. K., Ishizu, Y., Shimizu, Y., Furuhata, E., Maeda, S., Negishi, Y., Mungall, C. J., Meehan, T. F., Lassmann, T., Itoh, M., Kawaji, H., Kondo, N., Kawai, J., Lennartsson, A., Daub, C. O., Heutink, P., Hume, D. A., Jensen, T. H., Suzuki, H., Hayashizaki, Y., Mueller, F., Forrest, A. R. R., Carninci, P., Rehli, M. & Sandelin, Albin Gustav, 2014, In: Nature. 507, 7493, p. 455-461 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    A unified architecture of transcriptional regulatory elements

    Andersson, Robin, Sandelin, Albin Gustav & Danko, C. G., Aug 2015, In: Trends in Genetics. 31, 8, p. 426-433 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    Human gene promoters are intrinsically bidirectional

    Andersson, Robin, Chen, Y., Core, L., Lis, J. T., Sandelin, Albin Gustav & Jensen, T. H., 2015, In: Molecular Cell. 60, 3, p. 346-347 2 p.

    Research output: Contribution to journal › Letter › Research › peer-review

  39. Published

    Determinants of enhancer and promoter activities of regulatory elements

    Andersson, Robin & Sandelin, Albin Gustav, 2020, In: Nature Reviews Genetics. 21, 2, p. 71-87 17 p.

    Research output: Contribution to journal › Review › Research › peer-review

  40. Published

    Low physical activity accentuates the effect of the FTO rs9939609 polymorphism on body fat accumulation

    Andreasen, C. H., Stender-Petersen, K. L., Mogensen, M. S., Torekov, Signe Sørensen, Wegner, L., Andersen, G., Nielsen, A. L., Albrechtsen, Anders, Borch-Johnsen, K., Rasmussen, S. S., Clausen, J. O., Sandbaek, A., Lauritzen, T., Hansen, L., Jørgensen, T., Pedersen, Oluf Borbye & Hansen, T., 2008, In: Diabetes. 57, 1, p. 95-101 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    Probabilistic Equilibrium Sampling of Protein Structures from SAXS Data and a Coarse Grained Debye Formula

    Andreetta, C., 2013, Department of Biology, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  42. Published

    The Threatened Species Imperative: Conservation assessments would benefit from population genomic insights

    Andrew DeWoody, J., Jeon, J. Y., Bickham, J. W., Heenkenda, E. J., Janjua, S., Lamka, G. F., Mularo, A. J., Black, A., Brüniche-Olsen, Anna & Willoughby, J. R., 2022, In: PNAS. 119, 35, 2 p., e2210685119.

    Research output: Contribution to journal › Letter › Research › peer-review

  43. Published

    Targets of balancing selection in the human genome

    Andrés, A. M., Hubisz, M. J., Indap, A., Torgerson, D. G., Degenhardt, J. D., Boyko, A. R., Gutenkunst, R. N., White, T. J., Green, E. D., Bustamante, C. D., Clark, A. G. & Nielsen, Rasmus, 2009, In: Molecular Biology and Evolution. 26, 12, p. 2755-64 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    Bayesian inference of protein ensembles from SAXS data

    Antonov, L. D., Olsson, S., Boomsma, Wouter & Hamelryck, Thomas Wim, 2016, In: Physical Chemistry Chemical Physics. 18, 8, p. 5832-5838 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    Parallel GPGPU Evaluation of Small Angle X-ray Scattering Profiles in a Markov Chain Monte Carlo Framework

    Antonov, L. D., Andreetta, C. & Hamelryck, Thomas Wim, 2013, Biomedical Engineering Systems and Technologies. Gabriel, J., Schier, J. & Huffel, S. V. (eds.). Springer Science+Business Media, Vol. 357. p. 222-235 14 p. (Communications in Computer and Information Science).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  46. Published

    Genetic determinants of glycated hemoglobin levels in the Greenlandic Inuit population

    Appel, V. R., Moltke, Ida, Jørgensen, M. E., Bjerregaard, P., Linneberg, Allan René, Pedersen, Oluf Borbye, Albrechtsen, Anders, Hansen, Torben & Grarup, Niels, 2018, In: European Journal of Human Genetics. 26, 6, p. 868-875 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    Applying Undertaker to quality assessment

    Archie, J. G., Paluszewski, M. & Karplus, K., 2009, In: Proteins - Structure Function and Bioinformatics. 77, S9, p. 191-195

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    Allosteric regulation and communication between subunits in uracil phosphoribosyltransferase from Sulfolobus solfataricus

    Arent, S., Harris, P., Jensen, K. F. & Larsen, Sine, 2005, In: Biochemistry. 44, 3, p. 883-892

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    SignalP 5.0 improves signal peptide predictions using deep neural networks

    Armenteros, J. J. A., Tsirigos, Konstantinos, Sønderby, C. K., Petersen, T. N., Winther, Ole, Brunak, Søren, von Heijne, G. & Nielsen, H., 18 Feb 2019, In: Nature Biotechnology. 37, 4, p. 420-423

    Research output: Contribution to journal › Journal article › Communication

  50. Published

    Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells

    Arner, E., Daub, C. O., Vitting-Seerup, K., Andersson, R., Lilje, B., Drabløs, F., Lennartsson, A., Rönnerblad, M., Hrydziuszko, O., Vitezic, M., Freeman, T. C., Alhendi, A. M. N., Arner, P., Axton, R., Baillie, J. K., Beckhouse, A., Bodega, B., Briggs, J., Brombacher, F., Davis, M. & 89 others, Detmar, M., Ehrlund, A., Endoh, M., Eslami, A., Fagiolini, M., Fairbairn, L., Faulkner, G. J., Ferrai, C., Fisher, M. E., Forrester, L., Goldowitz, D., Guler, R., Ha, T., Hara, M., Herlyn, M., Ikawa, T., Kai, C., Kawamoto, H., Khachigian, L. M., Klinken, S. P., Kojima, S., Koseki, H., Klein, S., Mejhert, N., Miyaguchi, K., Mizuno, Y., Morimoto, M., Morris, K. J., Mummery, C., Nakachi, Y., Ogishima, S., Okada-Hatakeyama, M., Okazaki, Y., Orlando, V., Ovchinnikov, D., Passier, R., Patrikakis, M., Pombo, A., Qin, X., Roy, S., Sato, H., Savvi, S., Saxena, A., Schwegmann, A., Sugiyama, D., Swoboda, R., Tanaka, H., Tomoiu, A., Winteringham, L. N., Wolvetang, E., Yanagi-Mizuochi, C., Yoneda, M., Zabierowski, S., Zhang, P., Abugessaisa, I., Bertin, N., Diehl, A. D., Fukuda, S., Furuno, M., Harshbarger, J., Hasegawa, A., Hori, F., Ishikawa-Kato, S., Ishizu, Y., Itoh, M., Kawashima, T., Kojima, M., Kondo, N., Lizio, M., Meehan, T. F., Mungall, C. J., Murata, M., Nishiyori-Sueki, H., Sahin, S., Nagao-Sato, S., Severin, J., de Hoon, M. J. L., Kawai, J., Kasukawa, T., Lassmann, T., Suzuki, H., Kawaji, H., Summers, K. M., Wells, C., Hume, D. A., Forrest, A. R. R., Sandelin, Albin Gustav, Carninci, P. & Hayashizaki, Y., 2015, In: Science (New York, N.Y.). 347, 6225, p. 1010-1014 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

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