- 2001
- Published
Implications of secondary structure prediction and amino acid sequence comparison of class I and class II phosphoribosyl diphosphate synthases on catalysis, regulation, and quaternary structure.
Krath, B. N. & Hove-Jensen, B., 2001, In: Protein Science. 10, 11, p. 2317-24 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
On the total number of genes and their length distribution in complete microbial genomes
Skovgaard, M., Jensen, Lars Juhl, Brunak, Søren, Ussery, D. & Krogh, Anders, 2001, In: Trends in Genetics. 17, 8, p. 425-8 4 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The remarkable chlorosome
Frigaard, Niels-Ulrik, Vassilieva, E. V., Li, H., Milks, K. J., Zhao, J. & Bryant, D. A., 2001, Proceedings of the 12th International Congress on Photosynthesis. CSIRO Publishing, p. S1-003 6 p.Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
- 2002
- Published
Chlorobium tepidum mutant lacking bacteriochlorophyll c made by inactivation of the bchK gene, encoding bacteriochlorophyll c synthase
Frigaard, Niels-Ulrik, Voigt, G. D. & Bryant, D. A., 2002, In: Journal of Bacteriology. 184, 12, p. 3368-3376 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
E. coli dihydroorotate dehydrogenase reveals structural and functional distinctions between different classes of dihydroorotate dehydrogenases.
Nørager, S., Jensen, K. F., Björnberg, O. & Larsen, Sine, 2002, In: Structure. 10, p. 1211-1223Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Molecular identification of the insect adipokinetic hormone receptors.
Staubli, F., Jørgensen, T. J. D., Cazzamali, G., Williamson, M., Lenz, C., Søndergaard, Leif, Roepstorff, P. & Grimmelikhuijzen, Cornelis (Cok), 2002, In: Proceedings of the National Academy of Science of the United States of America. 99, 6, p. 3446-51 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Selective Protein Extraction from Chlorobium tepidum Chlorosomes Using Detergents. Evidence That CsmA Forms Multimers and Binds Bacteriochlorophyll a
Bryant, D. A., Vassilieva, E. V., Frigaard, Niels-Ulrik & Li, H., 2002, In: Biochemistry. 41, 48, p. 14403-14411 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Selective advantage of ray florets in Scalesia affinis and S. pedunculata (Asteraceae), two endemic species from the Galápagos
Nielsen, Lene Rostgaard, Philipp, M. & Siegismund, Hans Redlef, 2002, In: Evolutionary Ecology. 16, 2, p. 139-153 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Subcellular localization of chlorosome proteins in Chlorobium tepidum and characterization of three new chlorosome proteins: CsmF, CsmH, and CsmX
Vassilieva, E. V., Stirewalt, V. L., Jakobs, C. U., Frigaard, Niels-Ulrik, Inoue-Sakamoto, K., Baker, M. A., Sotak, A. & Bryant, D. A., 2002, In: Biochemistry. 41, p. 4358-4370 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The Motion of a Single Molecule, the Lambda-Receptor, in the Bacterial Outer Membrane
Oddershede, L., Dreyer, J. K., Grego, S., Brown, Stanley & Berg-Sørensen, K., 2002, In: Biophysical Journal. 83, 6, p. 3152-61 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2003
- Published
Chlorobium Tepidum: Insights into the Structure, Physiology, and Metabolism of a Green Sulfur Bacterium Derived from the Complete Genome Sequence
Frigaard, Niels-Ulrik, Chew, A. G. M., Li, H., Maresca, J. A. & Bryant, D. A., 2003, In: Photosynthesis Research. 78, 2, p. 93-117 24 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
EasyGene - a prokaryotic gene finder that ranks ORFs by statistical significance
Larsen, T. S. & Krogh, Anders, 2003, In: BMC Bioinformatics. 4(1), p. 21Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
Hove-Jensen, B., Rosenkrantz, T. J., Haldimann, A. & Wanner, B. L., 2003, In: Journal of Bacteriology. 185, 9, p. 2793-801 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Gene flow from oilseed rape (Brassica napus) and beet (Beta vulgaris) to wild relatives: Effects of herbicide tolerant cultivars
J�rgensen, R. B., Hauser, T. P., Hansen, L. B., Siegismund, Hans Redlef, Andersen, B., Lelley, T., Balazs, E. & Tepfer, M., 2003, Ecological impact of GMO dissemination in agro-ecosystems.Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
Molecular cloning, functional expression, and gene silencing of two Drosophila receptors for the Drosophila neuropeptide pyrokinin-2.
Rosenkilde, C., Cazzamali, G., Williamson, M., Hauser, Frank, Søndergaard, Leif, DeLotto, R. & Grimmelikhuijzen, Cornelis (Cok), 2003, In: Biochemical and Biophysical Research Communications. 309, 2, p. 485-94 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Prediction of lipoprotein signal peptides in Gram-negative bacteria.
Juncker, A. S., Willenbrock, H., Heijne, G. V., Nielsen, H. & Krogh, Anders, 2003, In: Protein Science. 12(8), p. 1652-1662Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Reliability measures for membrane protein topology prediction algorithms
Melén, K., Krogh, Anders & Heijne, G. V., 2003, In: Journal of Molecular Biology. 327(3), p. 735-744Research output: Contribution to journal › Journal article › Research › peer-review
- Published
RpoD promoters in Campylobacter jejuni exhibit a strong periodic signal instead of a -35 box
Petersen, L., Larsen, T. S., Ussery, D. W., On, S. L. W. & Krogh, Anders, 2003, In: Journal of Molecular Biology. 326(5), p. 1361-1372Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Single-cell Analysis of Lambda Immunity Regulation
Bæk, K. T., Svenningsen, Sine Lo, Eisen, H., Sneppen, Kim & Brown, Stanley, 2003, In: Journal of Molecular Biology. 334, 3, p. 363-372 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Partial self-incompatibility in the polyploid endemic species Scalesia affinis (Asteraceae) from the Galápagos: remnants of a self-incompatibility system?
Nielsen, Lene Rostgaard, Siegismund, Hans Redlef & PHILIPP, M., 1 May 2003, In: Botanical Journal of the Linnean Society. 142, 1, p. 93-101 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Morphometric, AFLP and plastid microsatellite variation in populations of Scalesia divisa and S. incisa (Asteraceae) from the Galápagos Islands
Nielsen, Lene Rostgaard, Cowan, R. S., Siegismund, Hans Redlef, Adsersen, Henning Emil, PHILIPP, M. & Fay, M. F., 1 Nov 2003, In: Botanical Journal of the Linnean Society. 143, 3, p. 243-254 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2004
- Published
A Combined Transmembrane Topology and Signal Peptide Prediction Method
Kall, L., Krogh, Anders & Sonnhammer, E. L., 2004, In: Journal of Molecular Biology. Vol. 338 (5), p. 1027-36Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A New Paradigm for General Architecture Routing
Paluszewski, M., Winter, Pawel & Zachariasen, M., 2004, Proceedings of the 14th ACM Great Lakes Symposium on VLSI. New York, NY, USA: Association for Computing Machinery, p. 202-207Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research
- Published
Adaptive evolution of cytochrome c oxidase: Infrastructure for a carnivorous plant radiation
Jobson, R. W., Nielsen, Rasmus, Laakkonen, L., Wikström, M. & Albert, V. A., 2004, In: Proceedings of the National Academy of Sciences of the United States of America. 101, 52, p. 18064-18068 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Dwarfism and impaired gut development in insulin-like growth factor II mRNA-binding protein 1-deficient mice
Hansen, Thomas van Overeem, Hammer, N. A., Nielsen, J., Madsen, Mette, Dalbaeck, C., Wewer, Ulla M., Christiansen, Jan & Nielsen, Finn Cilius, 2004, In: Molecular and Cellular Biology. 24, 10, p. 4448-64 17 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Gene Inactivation in the Cyanobacterium Synechococcus sp. PCC 7002 and the Green Sulfur Bacterium Chlorobium tepidum Using In Vitro-Made DNA Constructs and Natural Transformation
Frigaard, Niels-Ulrik, Sakuragi, Y. & Bryant, D. A., 2004, In: Methods in Molecular Biology. 274, p. 325-340 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genetic manipulation of carotenoid biosynthesis in the green sulfur bacterium Chlorobium tepidum
Frigaard, Niels-Ulrik, Maresca, J. A., Yunker, C. E., Jones, A. D. & Bryant, D. A., 2004, In: Journal of Bacteriology. 186, 16, p. 5210-5220 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Heterooligomeric phosphoribosyl diphosphate synthase of Saccharomyces cerevisiae: Combinatorial expression of the five PRS genes in Escherichia coli
Hove-Jensen, B., 2004, In: Journal of Biological Chemistry. 279, 39, p. 40345-50 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Nine mutants of Chlorobium tepidum each unable to synthesize a different chlorosome protein still assemble functional chlorosomes
Frigaard, Niels-Ulrik, Li, H., Milks, K. J. & Bryant, D. A., 2004, In: Journal of Bacteriology. 186, 3, p. 646-653 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Seeing green bacteria in a new light: genomics-enabled studies of the photosynthetic apparatus in green sulfur bacteria and filamentous anoxygenic phototrophic bacteria
Frigaard, Niels-Ulrik & Bryant, D. A., 2004, In: Archives of Microbiology. 182, 4, p. 265-276 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Structural, kinetic, and mutational studies of the zinc ion environment in tetrameric cytidine deaminase
Johansson, E., Neuhard, J., Willemoës, Martin & Larsen, Sine, 2004, In: Biochemistry. 43, 20, p. 6020-9 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Surface exposed amino acid differences between mesophilic and thermophilic phosphoribosyl diphosphate synthase.
Hove-Jensen, B. & McGuire, J. N., 2004, In: European Journal of Biochemistry. 271, 22, p. 4526-33 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Teaching computers to fold proteins
Winther, O. & Krogh, Anders, 2004, In: Physical Review E (Statistical, Nonlinear, and Soft Matter Physics). Vol. 70 (3) pt. 1, p. 030903Research output: Contribution to journal › Journal article › Research
- Published
The bchU gene of Chlorobium tepidum encodes the C-20 methyltransferase in bacteriochlorophyll c biosynthesis
Maresca, J. A., Gomez Maqueo Chew, A., Ponsatí, M. R., Frigaard, Niels-Ulrik, Ormerod, J. G. & Bryant, D. A., 2004, In: Journal of Bacteriology. 186, 9, p. 2558-2566 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The Block Hidden Markov Model for Biological Sequence Analysis
Won, K. J., Prügel-Bennett, A. & Krogh, Anders, 2004, Knowledge-BasedIntelligent Informationand Engineering Systems: 8th International Conference, KES 2004, Proceedings. Negoita, M. G., Howlett, R. J. & Jain, L. (eds.). Springer, Vol. 1. p. 64-70 7 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Vol. 3213).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
- Published
The fission yeast heterochromatin protein Rik1 is required for telomere clustering during meiosis
Tuzon, C. T., Borgstrøm, B., Weilguny, D., Egel, Richard, Cooper, J. P. & Nielsen, Olaf, 2004, In: Journal of Cell Biology. 165, 6, p. 759-65 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Training HMM structure with genetic algorithm for biological sequence analysis
Won, K. J. & Krogh, Anders, 2004, In: Bioinformatics. Vol. 20 (18), p. 3613-9Research output: Contribution to journal › Journal article › Research › peer-review
- 2005
- Published
Allosteric regulation and communication between subunits in uracil phosphoribosyltransferase from Sulfolobus solfataricus
Arent, S., Harris, P., Jensen, K. F. & Larsen, Sine, 2005, In: Biochemistry. 44, 3, p. 883-892Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Catalytic residues Lys197 and Arg199 of Bacillus subtilis phosphoribosyl diphosphate synthase. Alanine-scanning mutagenesis of the flexible catalytic loop.
Hove-Jensen, B., Bentsen, A. K. & Harlow, K. W., 2005, In: FEBS Journal. 272, 14, p. 3631-9 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Characterization of different crystal forms of the a-glucosidase MalA from Sulfolobus solfataricus
Ernst, H. A., Willemoës, Martin, Lo Leggio, Leila, Leonard, G., Blum, P. & Larsen, Sine, 2005, In: Acta Crystallographica Section F. 61, p. 1039-1042Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Characterization of different crystal forms of the alpha-glucosidase MalA from Sulfolobus solfataricus
Ernst, H. A., Willemoës, Martin, Lo Leggio, Leila, Leonard, G., Blum, P. & Larsen, Sine, 2005, In: Acta Crystallographica. Section F : Structural Biology and Crystallization Communications. 61, Pt 12, p. 1039-42 3 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Evolving hidden Markov models for protein secondary structure prediction
Won, K. J., Hamelryck, Thomas Wim, Prügel-Bennett, A. & Krogh, Anders, 2005, The 2005 IEEE Congress on Evolutionary Computation, IEEE CEC 2005: Proceedings. IEEE, Vol. 3. p. 33-40 8 p.Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
- Published
Expression of IGF-II mRNA-binding proteins (IMPs) in gonads and testicular cancer
Hammer, N. A., Hansen, Thomas van Overeem, Byskov, A. G., Rajpert-De Meyts, E., Grøndahl, M. L., Bredkjaer, H. E., Wewer, Ulla M., Christiansen, Jan & Nielsen, Finn Cilius, 2005, In: Reproduction. 130, 2, p. 203-12 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Full cyclic coordinate descent: solving the protein loop closure problem in Cα space
Boomsma, Wouter & Hamelryck, Thomas Wim, 2005, In: BMC Bioinformatics. 6, 10 p., 159.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Isolation and Characterization of Carotenosomes from a Bacteriochlorophyll c-less Mutant of Chlorobium tepidum
Frigaard, Niels-Ulrik, Li, H., Martinsson, P., Das, S. K., Frank, H. A., Aartsma, T. J. & Bryant, D. A., 2005, In: Photosynthesis Research. 86, 1-2, p. 101-11 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Novel class III phosphoribosyl diphosphate synthase: structure and properties of the tetrameric, phosphate-activated, non-allosterically inhibited enzyme from Methanocaldococcus jannaschii.
Kadziola, Anders, Jepsen, C. H., Johansson, E., McGuire, J., Larsen, Sine & Hove-Jensen, B., 2005, In: Journal of Molecular Biology. 354, 4, p. 815-28 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Når enzymer tøver - CTP - biosyntesen i mælkesyrebakterier
Martinussen, J., Willemoës, Martin, Kilstrup, M., Jensen, P. R. & Hammer, K., 2005, In: Dansk Kemi. 86, 8, p. 20-22Research output: Contribution to journal › Comment/debate › Research
- Published
Structures of dCTP deaminase from Escherichia coli with bound substrate and product: reaction mechanism and determinants of mono- and bifunctionality for a family of enzymes
Johansson, E., Fanø, M., Bynck, J. H., Neuhard, J., Larsen, S., Sigurskjold, B. W., Christensen, U. & Willemoës, Martin, 2005, In: Journal of Biological Chemistry. 280, 4, p. 3051-9 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2006
- Published
A hidden Markov model approach for determining expression from genomic tiling micro arrays
Terkelsen, K. M., Gardner, P. P., Arctander, P. & Krogh, Anders, 2006, In: BMC Bioinformatics. 7, 239Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Community genomics among stratified microbial assemblages in the ocean's interior
DeLong, E. F., Preston, C. M., Mincer, T., Rich, V., Hallam, S. J., Frigaard, Niels-Ulrik, Martinez, A., Sullivan, M. B., Edwards, R., Brito, B. R., Chisholm, S. W. & Karl, D. M., 2006, In: Science. 311, 5760, p. 496-503 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Reconstructing genome evolution in historic samples of the Irish potato famine pathogen
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Natural selection affects multiple aspects of genetic variation at putatively peutral sites across the human genome
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True single-molecule DNA sequencing of a pleistocene horse bone
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