Computational and RNA Biology

Read more
101 - 150 out of 1,140Page size: 50
  1. 2006
  2. Published

    Diverse bacterial genomes encode an operon of two genes, one of which is a unusual class-I release factor that potentially recognizes atypical mRNA signals other than normal stop codons

    Baranov, P., Vestergaard, Bente, Hamelryck, Thomas Wim, Gesteland, Nyborg, J. & Atking, J., 2006, In: Biology Direct. 13, p. 1-28 28 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Graphical models and directional statistics capture protein structure

    Boomsma, Wouter, Kent, J. T., Mardia, K. V., Taylor, C. C. & Hamelryck, Thomas Wim, 2006, Interdisciplinary Statistics and Bioinformatics. Barber, S., Baxter, P. D., Mardia, K. V. & Walls, R. E. (eds.). Leeds University Press, p. 91-94 4 p.

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  4. Published

    Identification of physicochemical selective pressure on protein encoding nucleotide sequences

    Wong, W. S. W., Sainudiin, R. & Nielsen, Rasmus, 2006, In: BMC Bioinformatics. 7, 10 p., 148.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Interactions between Barley a-Amylases, Substrates, Inhibitors and Regulatory Proteins

    Hachem, M. A., Bozonnet, S., Willemoës, Martin, Bønsager, B. C., Nielsen, M. M., Fukuda, K., Kramhøft, B., Maeda, K., Sigurskjold, B. W., Hägglund, P., Finnie, C., Mori, H., Robert, X., Jensen, M. H., Tranier, S., Aghajari, N., Haser, R. & Svensson, B., 2006, In: Journal of Applied Glycoscience. 53, 2, p. 163-169

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Molecular contacts for chlorosome envelope proteins revealed by cross-linking studies with chlorosomes from Chlorobium tepidum

    Li, H., Frigaard, Niels-Ulrik & Bryant, D. A., 2006, In: Biochemistry. 45, 30, p. 9095-9103 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Niels Bohr – er det ikke noget med nogen antomer? Personer og kanoner i naturvidenskaben.

    Vogel, U. B. & Willemoës, Martin, 2006, In: Biozoom. 1

    Research output: Contribution to journal › Comment/debate › Research

  8. Published

    Prokaryotic photosynthesis and phototrophy illuminated

    Bryant, D. A. & Frigaard, Niels-Ulrik, 2006, In: Trends in Microbiology. 14, 11, p. 488-496 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Protein structure prediction using tabu search and half-sphere exposure measure

    Paluszewski, M., Hamelryck, Thomas Wim & Winter, Pawel, 2006.

    Research output: Contribution to conference › Poster › Research

  10. Published

    Proteorhodopsin lateral gene transfer between marine planktonic Bacteria and Archaea

    Frigaard, Niels-Ulrik, Martinez, A., Mincer, T. J. & DeLong, E. F., 2006, In: Nature. 439, 7078, p. 847-850 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Reconstructing protein structure from solvent exposure using tabu search

    Paluszewski, M., Hamelryck, Thomas Wim & Winter, Pawel, 2006, In: Algorithms for Molecular Biology. 1, p. 14

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Variants in the 5' region of the neuropeptide Y receptor Y2 gene (NPY2R) are associated with obesity in 5,971 white subjects

    Torekov, Signe Sørensen, Larsen, L. H., Andersen, G., Albrechtsen, Anders, Glümer, C., Borch-Johnsen, K., Jørgensen, Tina, Hansen, Teis Schjals & Pedersen, Oluf Borbye, 2006, In: Diabetologia. 49, 11, p. 2653-8 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. 2007
  14. Published

    Alle bakterier deler gener ved horisontal overførsel

    Frigaard, Niels-Ulrik, 2007, In: Dansk Kemi. 88, 5, p. 28-31 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    A code for transcription initiation in mammalian genomes

    Frith, M. C., Valen, E. D., Krogh, Anders, Hayashizaki, Y., Carninci, P. & Sandelin, Albin Gustav, 2007, In: Genome Research. 18, 1, p. 1-12 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Advantages of combined transmembrane topology and signal peptide prediction--the Phobius web server.

    Käll, L., Krogh, Anders & Sonnhammer, E. L. L., 2007, In: Nucleic Acids Research. 35, Web Server issue, p. W429-32

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    An evolutionary method for learning HMM structure: prediction of protein secondary structure.

    Won, K., Hamelryck, Thomas Wim, Prügel-Bennett, A. & Krogh, Anders, 2007, In: BMC Bioinformatics. 8, p. 357

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Bacteriochlorophyllide c C-82 and C-121 methyltransferases are essential for adaptation to low light in Chlorobaculum tepidum

    Gomez Maqueo Chew, A., Frigaard, Niels-Ulrik & Bryant, D. A., 2007, In: Journal of Bacteriology. 189, 17, p. 6176-6184 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Correlation between mechanical strength of messenger RNA pseudoknots and ribosomal frameshifting.

    Hansen, T. M., Reihani, S. N. S., Oddershede, L. B. & Sørensen, Michael Askvad, 2007, In: Proceedings of the National Academy of Science of the United States of America. 104, 14, p. 5830-5 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Forskningsbaseret undervisning- og hva' så!

    Willemoës, Martin & Vogel, U. B., 2007, In: Biozoom. 3

    Research output: Contribution to journal › Comment/debate › Research

  21. Published

    Genetic analysis of the estrogen-related receptor alpha and studies of association with obesity and type 2 diabetes

    Larsen, L. H., Rose, C. S., Sparsø, T., Overgaard, J., Torekov, Signe Sørensen, Grarup, Niels, Jensen, Dan Funck, Albrechtsen, Anders, Andersen, G., Ek, J., Glümer, C., Borch-Johnsen, K., Jørgensen, Tina, Hansen, Teis Schjals & Pedersen, Oluf Borbye, 2007, In: International Journal of Obesity. 31, 2, p. 365-70 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Intragenomic matching reveals a huge potential for miRNA-mediated regulation in plants.

    Lindow, M., Jacobsen, A., Nygaard, S., Mang, Y. & Krogh, Anders, 2007, In: PLoS Computational Biology. 3, 11, p. e238

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    MASTR: multiple alignment and structure prediction of non-coding RNAs using simulated annealing.

    Lindgreen, S., Gardner, P. P. & Krogh, Anders, 2007, In: Bioinformatics. 23, 24, p. 3304-11 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Mechanism of flavin reduction in the class 1A dihydroorotate dehydrogenase from Lactococcus lactis.

    Fagan, R. L., Jensen, K. F., Björnberg, O. & Palfey, B. A., 2007, In: Biochemistry. 46, 13, p. 4028-36 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Mutational analysis of the nucleotide binding site of Escherichia coli dCTP deaminase

    Thymark, M., Johansson, E., Larsen, Sine & Willemoës, Martin, 2007, In: Archives of Biochemistry and Biophysics. 470, 1, p. 20-6 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    Prediction of Structurally-Determined Coiled-Coil Domains with Hidden Markov Models

    Fariselli, P., Molinini, D., Casadio, R. & Krogh, Anders, 2007, Bioinformatics Research and Development: First International Conference, BIRD 2007 Proceedings. Hochreiter, S. & Wagner, R. (eds.). Springer, p. 292-302 11 p. (Lecture Notes in Bioinformatics, Vol. 4414).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  27. Published

    Pseudouridylation of helix 69 of 23S rRNA is necessary for an effective translation termination.

    Ejby, M., Sørensen, Michael Askvad & Pedersen, Steen, 2007, In: Proceedings of the National Academy of Science of the United States of America. 104, 49, p. 19410-5 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    Radiation and speciation of pelagic organisms during periods of global warming: the case of the common minke whale, Balaenoptera acutorostrata

    Pastene, L. A., Goto, M., Kanda, N., Zerbini, A. N., Kerem, D., Watanabe, K., Bessho, Y., Hasegawa, M., Nielsen, Rasmus, Larsen, F. & Palsbøll, P. J., 2007, In: Molecular Ecology. 16, 7, p. 1481-1495 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    Regulation of dCTP deaminase from Escherichia coli by nonallosteric dTTP binding to an inactive form of the enzyme

    Johansson, E., Thymark, M., Bynck, J. H., Fanø, M., Larsen, Sine & Willemoës, Martin, 2007, In: FEBS Journal. 274, 16, p. 4188-4198 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    Structural and enzymatic investigation of the Sulfolobus solfataricus uridylate kinase shows competitive UTP inhibition and the lack of GTP stimulation.

    Jensen, K. S., Johansson, E. & Jensen, K. F., 2007, In: Biochemistry. 46, 10, p. 2745-57 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    Studies of the common DIO2 Thr92Ala polymorphism and metabolic phenotypes in 7342 Danish white subjects

    Grarup, Niels, Lepola, Mette Andersen, Andreasen, C. H., Albrechtsen, Anders, Borch-Johnsen, K., Jørgensen, T., Auwerx, J., Schmitz, O., Hansen, Torben & Pedersen, Oluf Borbye, 2007, In: Journal of Clinical Endocrinology and Metabolism. 92, 1, p. 363-6 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    Tanimoto's Best Barbecue: Discovering Regulatory Modules using Tanimoto Scores

    Menzel, K. P., Mosig, A. & Stadler, P. F., 2007, Lecture Notes in Informatics: Proceedings of the German Conference on Bioinformatics 2007. Falter, C., Schliep, A., Selbig, J. & Walther, M. V. A. (eds.). p. 68-77 10 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  33. Published

    The GCKR rs780094 polymorphism is associated with elevated fasting serum triacylglycerol, reduced fasting and OGTT-related insulinaemia, and reduced risk of type 2 diabetes

    Sparsø, T., Andersen, G., Nielsen, T., Burgdorf, K. S., Gjesing, A. M. P., Nielsen, A. L., Albrechtsen, Anders, Rasmussen, S. S., Jørgensen, T., Borch-Johnsen, K., Sandbaek, A., Lauritzen, T., Madsbad, Sten, Hansen, Torben & Pedersen, Oluf Borbye, 2007, In: Diabetologia. 51, 1, p. 70-5 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    X-ray scattering and electron cryomicroscopy study on the effect of carotenoid biosynthesis to the structure of Chlorobium tepidum chlorosomes

    Ikonen, T. P., Li, H., Psencík, J., Laurinmäki, P. A., Butcher, S. J., Frigaard, Niels-Ulrik, Serimaa, R. E., Bryant, D. A. & Tuma, R., 2007, In: Biophysical Journal. 93, 2, p. 620-628 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    Bioinformatic and experimental analysis of the secondary structure of amelogenin

    Vilhjalmsson, B., Rasmussen, Anne, Fabi, B., van de Weert, Marco, Hamelryck, Thomas Wim & Lemoult, S., 1 Nov 2007, In: European Cells and Materials. 14, SUPPL.2, 1 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. 2008
  37. Published

    A generative, probabilistic model of local protein structure

    Boomsma, Wouter, Mardia, K. V., Taylor, C. C., Ferkinghoff-Borg, J., Krogh, Anders & Hamelryck, Thomas Wim, 2008, In: Proceedings of the National Academy of Science of the United States of America. 105, 26, p. 8932-8937 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    A genetic analysis of carbon-nanotube-binding proteins

    Brown, Stanley, Jespersen, T. S. & Nygård, Jesper, 2008, In: Small. 4, 4, p. 416-420

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    Asap: a framework for over-representation statistics for transcription factor binding sites.

    Marstrand, T. T., Frellsen, J., Moltke, Ida, Thiim, M., Valen, E., Retelska, D. & Krogh, Anders, 2008, In: PLoS ONE. 3, 2, p. e1623

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    Association testing of novel type 2 diabetes risk alleles in the JAZF1, CDC123/CAMK1D, TSPAN8, THADA, ADAMTS9, and NOTCH2 loci with insulin release, insulin sensitivity, and obesity in a population-based sample of 4,516 glucose-tolerant middle-aged Danes.

    Grarup, Niels, Andersen, G., Krarup, N. T., Albrechtsen, Anders, Schmitz, O., Jørgensen, T., Borch-Johnsen, K., Hansen, Torben & Pedersen, Oluf Borbye, 2008, In: Diabetes. 57, 9, p. 2534-40 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    Embryonic expression of Drosophila IMP in the developing CNS and PNS

    Adolph, S. K., Delotto, R., Nielsen, Finn Cilius & Christiansen, Jan, 2008, In: Gene Expression Patterns. 9, 3, p. 138-143 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    Expression, purification and preliminary diffraction studies of PhnP

    Podzelinska, K., He, S., Soares, A., Zechel, D., Hove-Jensen, B. & Jia, Z., 2008, In: Acta Crystallographica. Section F : Structural Biology and Crystallization Communications. 64, Pt 6, p. 554-7 3 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    Fast phylogenetic DNA barcoding

    Terkelsen, K. M., Boomsma, Wouter, Willerslev, Eske & Nielsen, Rasmus, 2008, In: Philosophical Transactions of the Royal Society of London. Biological Sciences. 363, 1512, p. 3997-4002 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    Genomic Insights into the Sulfur Metabolism of Phototrophic Green Sulfur Bacteria

    Frigaard, Niels-Ulrik & Bryant, D. A., 2008, In: Advances in Photosynthesis and Respiration. 27, p. 337-355 18 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    Genomic and Evolutionary Perspectives on Sulfur Metabolism in Green Sulfur Bacteria

    Frigaard, Niels-Ulrik & Bryant, D. A., 2008, Microbial Sulfur Metabolism. Springer, p. 60-76 16 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research

  46. Published

    Hidden Markov models for prediction of protein features.

    Bystroff, C. & Krogh, Anders, 2008, In: Methods in Molecular Biology. 413, p. 173-98 25 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    Identification of the bchP gene, encoding geranylgeranyl reductase in Chlorobaculum tepidum

    Gomez Maqueo Chew, A., Frigaard, Niels-Ulrik & Bryant, D. A., 2008, In: Journal of Bacteriology. 190, 2, p. 747-749 3 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    Impact of polymorphisms in WFS1 on prediabetic phenotypes in a population-based sample of middle-aged people with normal and abnormal glucose regulation

    Sparsø, T., Andersen, G., Albrechtsen, Anders, Jørgensen, T., Borch-Johnsen, K., Sandbaek, A., Lauritzen, T., Wasson, J., Permutt, M. A., Glaser, B., Madsbad, Sten, Pedersen, Oluf Borbye & Hansen, Torben, 2008, In: Diabetologia. 51, 9, p. 1646-52 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    In vivo and in vitro studies of the neuronal RNA-binding protein Drosophila IMP

    Adolph, S. K., 2008, Biologisk Institut: Museum Tusculanum. 144 p.

    Research output: Book/Report › Ph.D. thesis › Research

  50. Published

    Low physical activity accentuates the effect of the FTO rs9939609 polymorphism on body fat accumulation

    Andreasen, C. H., Stender-Petersen, K. L., Mogensen, M. S., Torekov, Signe Sørensen, Wegner, L., Andersen, G., Nielsen, A. L., Albrechtsen, Anders, Borch-Johnsen, K., Rasmussen, S. S., Clausen, J. O., Sandbaek, A., Lauritzen, T., Hansen, L., Jørgensen, T., Pedersen, Oluf Borbye & Hansen, T., 2008, In: Diabetes. 57, 1, p. 95-101 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  51. Published

    Mechanism of dTTP inhibition of the bifunctional dCTP deaminase:dUTPase encoded by Mycobacterium tuberculosis

    Helt, S. S., Thymark, M., Harris, P., Aagaard, C., Dietrich, J., Larsen, Sine & Willemoës, Martin, 2008, In: Journal of Molecular Biology. 376, 2, p. 554-69 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  52. Published

    Protein Decoy Generation Using Branch and Bound with Efficient Bounding

    Paluszewski, M. & Winter, Pawel, 2008, Algorithms in Bioinformatics: 8th International Workshop, WABI 2008, Karlsruhe, Germany, September 15-19, 2008, Proceedings. Crandall, K. A. & Lagergren, J. (eds.). Springer, p. 382-393 12 p. (Lecture Notes in Computer Science : Lecture Notes in Bioinformatics; No. 5251).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  53. Published

    Protein Structure Prediction Using Bee Colony Optimization Metaheuristic: Extended Abstract

    Fonseca, R., Paluszewski, M. & Winter, Pawel, 2008, In: Koebenhavns Universitet. Datalogisk Institut. Rapport. 12, 11 p.

    Research output: Contribution to journal › Conference abstract in journal › Research

Previous 1 2 3 4 5 6 7 8 ...23 Next