Computational and RNA Biology

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  1. 2022
  2. Published

    Genetics of early-life head circumference and genetic correlations with neurological, psychiatric and cognitive outcomes

    Vogelezang, S., Bradfield, J. P., Early Growth Genetics Consortium, Ahluwalia, T. V. S., Liu, X., Schnurr, T. M., Frithioff-Bøjsøe, C., Bønnelykke, K., Lind, M. V., Lauritzen, L., Michaelsen, K. F., Lund, M. A. V., Melbye, M., Morgen, C. S., Pedersen, O. B., Holm, J-C., Grarup, N., Hansen, T., Nohr, E. A., Bisgaard, H. & 3 others, Grant, S. F. A., Felix, J. F. & Jaddoe, V. W. V., 2022, In: BMC Medical Genomics. 15, 16 p., 124.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Genome-wide study of early and severe childhood asthma identifies interaction between CDHR3 and GSDMB

    Eliasen, A. U., Pedersen, C. E. T., Rasmussen, M. A., Wang, N., Soverini, M., Fritz, A., Stokholm, J., Chawes, B. L., Morin, A., Bork-Jensen, J., Grarup, N., Pedersen, O., Hansen, T., Linneberg, A., Mortensen, P. B., Hougaard, D. M., Bybjerg-Grauholm, J., Bækvad-Hansen, M., Mors, O., Nordentoft, M. & 14 others, Børglum, A. D., Werge, Thomas, Agerbo, E., Söderhall, C., Altman, M. C., Thysen, A. H., McKennan, C. G., Brix, Susanne, Gern, J. E., Ober, C., Ahluwalia, Tarun Veer Singh, Bisgaard, H., Pedersen, A. G. & Bønnelykke, Klaus, 2022, In: Journal of Allergy and Clinical Immunology. 150, 3, p. 622-630

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Genomic evidence refutes the hypothesis that the Bornean banteng is a distinct species

    Sun, X., Ciucani, M. M., Rasmussen, Jacob Agerbo, Gilbert, M Thomas P & Sinding, Mikkel Holger Strander, 2022, In: BMC Ecology and Evolution. 22, 4 p., 110.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Genomic stability and phenotypic characteristics of industrially-produced Lacticaseibacillus rhamnosus GG

    Strickertsson, Marianne Stage, 2022, Department of Biology, Faculty of Science, University of Copenhagen. 112 p.

    Research output: Book/Report › Ph.D. thesis › Research

  6. Published

    Genomic surveillance of SARS-COV-2 reveals diverse circulating variant lineages in Nairobi and Kiambu Counties, Kenya

    Kuja, J. O., Kanoi, B. N., Balboa, Renzo Fidel Ferdinando, Shiluli, C., Maina, M., Waweru, H., Gathii, K., Mungai, M., Masika, M., Anzala, O., Mwau, M., Clark, T. G., Waitumbi, J. & Gitaka, J., 2022, In: BMC Genomics. 23, 1, 8 p., 627.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Genomic variation in baboons from central Mozambique unveils complex evolutionary relationships with other Papio species

    Santander, C., Molinaro, L., Mutti, G., Martínez, F. I., Mathe, J., da Silva, M. J. F., Caldon, M., Oteo-Garcia, G., Aldeias, V., Archer, W., Bamford, M., Biro, D., Bobe, R., Braun, D. R., Hammond, P., Lüdecke, T., Pinto, M. J., Meira Paulo, L., Stalmans, M., Regala, F. T. & 6 others, Bertolini, F., Moltke, Ida, Raveane, A., Pagani, L., Carvalho, S. & Capelli, C., 2022, In: BMC Ecology and Evolution. 22, 16 p., 44.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Grey wolf genomic history reveals a dual ancestry of dogs

    Bergström, A., Stanton, D. W. G., Taron, U. H., Frantz, L., Sinding, M. H. S., Ersmark, E., Pfrengle, S., Cassatt-Johnstone, M., Lebrasseur, O., Girdland-Flink, L., Fernandes, D. M., Ollivier, M., Speidel, L., Gopalakrishnan, S., Westbury, M. V., Ramos-Madrigal, J., Feuerborn, T. R., Reiter, E., Gretzinger, J., Münzel, S. C. & 61 others, Swali, P., Conard, N. J., Carøe, C., Haile, James Seymour, Linderholm, A., Androsov, S., Barnes, I., Baumann, C., Benecke, N., Bocherens, H., Brace, S., Carden, R. F., Drucker, D. G., Fedorov, S., Gasparik, M., Germonpré, M., Grigoriev, S., Groves, P., Hertwig, S. T., Ivanova, V. V., Janssens, L., Jennings, R. P., Kasparov, A. K., Kirillova, I. V., Kurmaniyazov, I., Kuzmin, Y. V., Kosintsev, P. A., Lázničková-Galetová, M., Leduc, C., Nikolskiy, P., Nussbaumer, M., O’Drisceoil, C., Orlando, L., Outram, A., Pavlova, E. Y., Perri, A. R., Pilot, M., Pitulko, V. V., Plotnikov, V. V., Protopopov, A. V., Rehazek, A., Sablin, M., Seguin-Orlando, A., Storå, J., Verjux, C., Zaibert, V. F., Zazula, G., Crombé, P., Hansen, Anders Johannes, Willerslev, Eske, Leonard, J. A., Götherström, A., Pinhasi, R., Schuenemann, V. J., Hofreiter, M., Gilbert, M Thomas P, Shapiro, B., Larson, G., Krause, J., Dalén, L. & Skoglund, P., 2022, In: Nature. 607, 7918, p. 313-320

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Guidelines for evaluating the conservation value of African lion (Panthera leo) translocations

    Becker, M. S., Almeida, J., Begg, C., Bertola, L., Breitenmoser, C., Breitenmoser, U., Coals, P., Funston, P., Gaylard, A., Groom, R., Henschel, P., Ikanda, D., Jorge, A., Kruger, J., Lindsey, P., Maimbo, H., Mandisodza-Chikerema, R., Maude, G., Mbizah, M., Miller, S. M. & 17 others, Mudongo, E., Mwape, H., Mweetwa, T., Naude, V., Nyirenda, V. R., Parker, A., Parker, D., Reid, C., Robson, A., Sayer, E., Selier, S. J., Sichande, M., Simukonda, C., Uiseb, K., Williams, V. L., Zimba, D. & Hunter, L., 2022, In: Frontiers in Conservation Science. 3, 13 p., 963961.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    H3K9 dimethylation safeguards cancer cells against activation of the interferon pathway

    Hansen, A. M., Ge, Y., Schuster, Mikkel Bruhn, Pundhir, Sachin, Jakobsen, J. S., Kalvisa, A., Tapia, Marta Cecylia, Gordon, Sandra, Ambri, F., Bagger, F. O., Pandey, D., Helin, K. & Porse, Bo Torben, 2022, In: Science Advances. 8, 11, eabf8627.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Haplotype and population structure inference using neural networks in whole-genome sequencing data

    Meisner, Jonas & Albrechtsen, Anders, 2022, In: Genome Research. 32, 8, p. 1542-1552 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Integrating convolution and self-attention improves language model of human genome for interpreting non-coding regions at base-resolution

    YANG, Meng, Huang, L., Huang, H., Tang, H., Zhang, N., Yang, H., Wu, J. & Mu, F., 2022, In: Nucleic Acids Research. 50, 14, 19 p., e81.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    JASPAR 2022: the 9th release of the open-access database of transcription factor binding profiles

    Castro-Mondragon, J. A., Riudavets-Puig, R., Rauluseviciute, I., Lemma, R. B., Turchi, L., Blanc-Mathieu, R., Lucas, J., Boddie, P., Khan, A., Perez, N. M., Fornes, O., Leung, T. Y., Aguirre, A., Hammal, F., Schmelter, D., Baranasic, D., Ballester, B., Sandelin, A., Lenhard, B., Vandepoele, K. & 3 others, Wasserman, W. W., Parcy, F. & Mathelier, A., 2022, In: Nucleic acids symposium series. 50, D1, p. D165-D173 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Joint identification of sex and sex-linked scaffolds in non-model organisms using low depth sequencing data

    Nursyifa, Casia, Brüniche-Olsen, Anna, Garcia Erill, Genís, Heller, Rasmus & Albrechtsen, Anders, 2022, In: Molecular Ecology Resources. 22, 2, p. 458-467 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Life-threatening viral disease in a novel form of autosomal recessive IFNAR2 deficiency in the Arctic

    Duncan, C. J. A., Skouboe, M. K., Howarth, S., Hollensen, A. K., Chen, R., Børresen, M. L., Thompson, B. J., Spegarova, J. S., Hatton, C. F., Stæger, F. F., Andersen, M. K., Whittaker, J., Paludan, S. R., Jørgensen, S. E., Thomsen, M. K., Mikkelsen, J. G., Heilmann, C., Buhas, D., Øbro, N. F., Bay, J. T. & 17 others, Marquart, Hanne Vibeke Hansen, Morena, M. T. D. L., Klejka, J. A., Hirschfeld, M., Borgwardt, L., Forss, I., Masmas, T., Poulsen, A., Noya, F., Rouleau, G., Hansen, Torben, Zhou, S., Albrechtsen, Anders, Alizadehfar, R., Allenspach, E. J., Hambleton, S. & Mogensen, T. H., 2022, In: Journal of Experimental Medicine. 219, 6, 26 p., e20212427.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    LocalNgsRelate: a software tool for inferring IBD sharing along the genome between pairs of individuals from low-depth NGS data

    Severson, A. L., Korneliussen, Thorfinn Sand & Moltke, Ida, 2022, In: Bioinformatics. 38, 4, p. 1159-1161 3 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Loss of sucrase-isomaltase function increases acetate levels and improves metabolic health in Greenlandic cohorts

    Andersen, M. K., Skotte, L., Jørsboe, E., Polito, R., Stæger, F. F., Aldiss, P., Hanghøj, K., Waples, R. K., Santander, C. G., Grarup, N., Dahl-Petersen, I. K., Diaz, L. J., Overvad, M., Senftleber, N. K., Søborg, B., Larsen, C. V. L., Lemoine, C., Pedersen, O., Feenstra, B., Bjerregaard, P. & 9 others, Melbye, M., Jørgensen, M. E., Færgeman, N. J., Koch, A., Moritz, Thomas, Gillum, M. P., Moltke, Ida, Hansen, Torben & Albrechtsen, Anders, 2022, In: Gastroenterology. 162, 4, p. 1171-1182.e3

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Massively targeted evaluation of therapeutic CRISPR off-targets in cells

    Pan, X., Qu, K., Yuan, H., Xiang, X., Anthon, C., Pashkova, L., Liang, X., Han, P., Corsi, G. I., Xu, F., Liu, P., Zhong, J., Zhou, Y., Ma, T., Jiang, H., Liu, J., Wang, J., Jessen, N., Bolund, L., Yang, H. & 5 others, Xu, X., Church, G. M., Gorodkin, Jan, Lin, L. & Luo, Y., 2022, In: Nature Communications. 13, 14 p., 4049.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Mechanisms Underlying siRNA Amplification in Arabidopsis thaliana

    Vigh, Maria Louisa, 2022, Department of Biology, Faculty of Science, University of Copenhagen. 201 p.

    Research output: Book/Report › Ph.D. thesis › Research

  20. Published

    Mesenchymal-epithelial crosstalk shapes intestinal regionalisation via Wnt and Shh signalling

    Maimets, Martti, Pedersen, M. T., Guiu, J., Dreier, J., Thodberg, Malte, Antoku, Yasuko, Schweiger, P. J., Rib, Leonor, Bardini Bressan, Raul, Miao, Y., Garcia, K. C., Sandelin, Albin Gustav, Serup, Palle & Jensen, Kim Bak, 2022, In: Nature Communications. 13, 12 p., 715.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Methods for fighting emerging pathogens

    Alcantara, L. C. J., Amenga-Etego, L., Andersson, Robin, Bhaumik, M., Choi, Y. K., Decaluwe, H., Geoghegan, J., Haagmans, B. L., López, S., Mukhtar, M. M., Nelwan, E., Rahal, E. A., Sato, K., Sklan, E. H. & Fang, Y. S. C., 2022, In: Nature Methods. 19, 4, p. 395-397 3 p.

    Research output: Contribution to journal › Comment/debate › Research › peer-review

  22. Published

    Mixture Models for Spherical Data with Applications to Protein Bioinformatics

    Mardia, K. V., Barber, S., Burdett, P. M., Kent, J. T. & Hamelryck, Thomas Wim, 2022, Directional Statistics for Innovative Applications: A Bicentennial Tribute to Florence Nightingale. Springer, p. 15-32 (Forum for Interdisciplinary Mathematics).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  23. Published

    Multiomics signatures of type 1 diabetes with and without albuminuria

    Clos-Garcia, M., Ahluwalia, Tarun Veer Singh, Winther, S. A., Henriksen, P., Ali, M., Fan, Yong, Stankevic, Evelina, Lyu, Liwei, Vogt, J. K., Hansen, Torben, Legido-Quigley, C., Rossing, Peter & Pedersen, Oluf Borbye, 2022, In: Frontiers in Endocrinology. 13, 17 p., 1015557.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    NanoDam identifies Homeobrain (ARX) and Scarecrow (NKX2.1) as conserved temporal factors in the Drosophila central brain and visual system

    Tang, J. L. Y., Hakes, A. E., Krautz, Robert, Suzuki, T., Contreras, E. G., Fox, P. M. & Brand, A. H., 2022, In: Developmental Cell. 57, 9, 23 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    NetSurfP-3.0: accurate and fast prediction of protein structural features by protein language models and deep learning

    Høie, M. H., Kiehl, E. N., Petersen, Bent, Nielsen, M., Winther, Ole, Nielsen, H., Hallgren, J. & Marcatili, P., 2022, In: Nucleic Acids Research. 50, W1, p. W510-W515 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    Non-dipping and higher nocturnal blood pressure are associated with risk of mortality and development of kidney disease in type 1 diabetes

    Hjortkjær, H., Persson, F., Theilade, S., Winther, S. A., Tofte, N., Ahluwalia, Tarun Veer Singh & Rossing, Peter, 2022, In: Journal of Diabetes and its Complications. 36, 9, 6 p., 108270.

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    Nuclear and cytoplasmic RNA exosomes and PELOTA1 prevent miRNA-induced secondary siRNA production in Arabidopsis

    Vigh, Maria Louisa, Bressendorff, Simon, Thieffry, A., Arribas Hernandez, Laura & Brodersen, Peter, 2022, In: Nucleic Acids Research. 50, 3, p. 1396-1415 20 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    Nutrient Availability Does Not Affect Community Assembly in Root-Associated Fungi but Determines Fungal Effects on Plant Growth

    Maciá-Vicente, J. G., Bai, B., Qi, R., Ploch, S., Breider, F. & Thines, M., 2022, In: mSystems. 7, 3, 14 p., e00304-22.

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    Origin and expansion of the world’s most widespread pinniped: Range-wide population genomics of the harbour seal (Phoca vitulina)

    Liu, X., Schjøtt, S. R., Granquist, S. M., Rosing-Asvid, A., Dietz, R., Teilmann, J., Galatius, A., Cammen, K., O’Corry-Crowe, G., Harding, K., Härkönen, T., Hall, A., Carroll, E. L., Kobayashi, Y., Hammill, M., Stenson, G., Kirstine Frie, A., Lydersen, C., Kovacs, K. M., Andersen, L. W. & 6 others, Hoffman, J. I., Goodman, S. J., Vieira, Filipe Garrett, Heller, Rasmus, Moltke, Ida & Olsen, Morten Tange, 2022, In: Molecular Ecology. 31, 6, p. 1682-1699

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    Orthologous microsatellites, transposable elements, and DNA deletions correlate with generation time and body mass in neoavian birds

    Ji, Y., Feng, S., Wu, L., Fang, Q., Brüniche-Olsen, Anna, DeWoody, J. A., Cheng, Y., Zhang, D., Hao, Y., Song, G., Qu, Y., Suh, A., KU, thw266, Hackett, S. J. & Lei, F., 2022, In: Science Advances. 8, 35, 11 p., eabo0099.

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    Overexpression of ATG8/LC3 enhances wound-induced somatic reprogramming in Physcomitrium patens

    Kanne, J. V., Ishikawa, M., Bressendorff, Simon, Ansbøl, Jeppe, Hasebe, M., Rodriguez, Eleazar & Petersen, Morten, 2022, In: Autophagy. 18, 6, p. 1463-1466 4 p.

    Research output: Contribution to journal › Comment/debate › Research › peer-review

  32. Published

    PAMP-triggered genetic reprogramming involves widespread alternative transcription initiation and an immediate transcription factor wave

    Thieffry, A., López Márquez, Diego, Lange, Jette Bornholdt, Gholami Malekroudi, M., Bressendorff, Simon, Barghetti, A., Sandelin, Albin Gustav & Brodersen, Peter, 2022, In: The Plant Cell. 34, 7, 23 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    Palaeoproteomics identifies beaver fur in Danish high-status Viking Age burials - direct evidence of fur trade

    Brandt, Luise Ørsted, Taurozzi, Alberto John, Mackie, Meaghan, Sinding, Mikkel Holger Strander, Vieira, Filipe Garrett, Schmidt, A. L., Rimstad, C., Collins, Matthew James & Mannering, U., 2022, In: PLoS ONE. 17, 7, 14 p., e0270040.

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    Performance characterization of PCR-free whole genome sequencing for clinical diagnosis

    Zhou, G., Zhou, M., Zeng, F., Zhang, N., Sun, Y., Qiao, Z., Guo, X., Zhou, S., Yun, G., Xie, J., Wang, X., Liu, F., Fan, C., Wang, Y., Fang, Z., Tian, Z., Dai, W., Sun, J., Peng, Z. & Song, L., 2022, In: Medicine. 101, 10, 8 p., e28972.

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    Persistent Topology of Protein Space

    Hamilton, W., Borgert, J. E., Hamelryck, Thomas Wim & Marron, J. S., 2022, Research in Computational Topology 2. Springer, p. 223-244 (Association for Women in Mathematics Series, Vol. 30).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  36. Published

    Physiological responses of narwhals to anthropogenic noise: A case study with seismic airguns and vessel traffic in the Arctic

    Williams, T. M., Blackwell, S. B., Tervo, O., Garde, E., Sinding, Mikkel Holger Strander, Richter, B. & Heide-Jørgensen, M. P., 2022, In: Functional Ecology. 36, 9, p. 2251-2266 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    Plant YTHDF proteins are direct effectors of antiviral immunity against an m6A-containing RNA virus

    Martínez-Pérez, M., Aparicio, F., Arribas Hernandez, Laura, Tankmar, Mathias Due, Rennie, Sarah, Brodersen, Peter & Pallas, V., 2022, 36 p.

    Research output: Working paper › Preprint › Research

  38. Published

    Plastome structure of 8 Calanthe s.l. species (Orchidaceae): comparative genomics, phylogenetic analysis

    Nanjala, C., Wanga, V. O., Odago, W., Mutinda, E. S., Waswa, E. N., Oulo, M. A., Mkala, E. M., Kuja, J., Yang, J., Dong, X., Hu, G. & Wang, Q., 2022, In: BMC Plant Biology. 22, 22 p., 387.

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    Polygenic heterogeneity in antidepressant treatment and placebo response

    Nøhr, A. K., Forsingdal, A., Moltke, Ida, Howes, O. D., Vitezic, M., Albrechtsen, Anders & Dalby, M., 2022, In: Translational Psychiatry. 12, 8 p., 456.

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    Promoter sequence and architecture determine expression variability and confer robustness to genetic variants

    Einarsson, H., Salvatore, Marco, Vaagenso, C., Alcaraz, N., Lange, Jette Bornholdt, Rennie, Sarah & Andersson, Robin, 2022, In: eLife. 2022, 36 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    Proteasome inhibition alters mitotic progression through the upregulation of centromeric α-Satellite RNAs

    Cáceres-Gutiérrez, R. E., Andonegui, M. A., Oliva-Rico, D. A., González-Barrios, R., Luna, F., Arriaga-Canon, C., López-Saavedra, A., Prada, D., Castro, C., Parmentier, L., Díaz-Chávez, J., Alfaro-Mora, Y., Navarro-Delgado, E. I., Fabian-Morales, E., Tran, B., Shetty, J., Zhao, Y., Alcaraz, N., De la Rosa, C., Reyes, J. L. & 4 others, Hédouin, S., Hubé, F., Francastel, C. & Herrera, L. A., 2022, In: FEBS Journal. 289, 7, p. 1858-1875 18 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    Pseudoreplication in genomics-scale data sets

    Waples, R. S., Waples, R. K. & Ward, E. J., 2022, In: Molecular Ecology Resources. 22, 2, p. 503-518 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    Reduced chromatin accessibility correlates with resistance to Notch activation

    van den Ameele, J., Krautz, Robert, Cheetham, S. W., Donovan, A. P. A., Llorà-Batlle, O., Yakob, R. & Brand, A. H., 2022, In: Nature Communications. 13, 1, 10 p., 2210.

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    Requirement of a deeply conserved ARGONAUTE phospho-cluster for target- mediated microRNA degradation in plants

    Guo, F., 2022, Department of Biology, Faculty of Science, University of Copenhagen. 118 p.

    Research output: Book/Report › Ph.D. thesis › Research

  45. Published

    Reversible mutations in gliding motility and virulence genes: A flexible and efficient phage defence mechanism in Flavobacterium psychrophilum

    Jørgensen, J., Sundell, K., Castillo, D., Dramshøj, L. S., Jørgensen, N. B., Madsen, S. B., Landor, L., Wiklund, T., Donati, V. L., Madsen, L., Dalsgaard, I. & Middelboe, Mathias, 2022, In: Environmental Microbiology. 24, 10, p. 4915-4930

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    SatuRn: Scalable analysis of differential transcript usage for bulk and single-cell RNA-sequencing applications

    Gilis, J., Vitting-Seerup, K., Van den Berge, K. & Clement, L., 2022, In: F1000Research. 10, 43 p., 374.

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    Semi-automated assembly of high-quality diploid human reference genomes

    Jarvis, E. D., Formenti, G., Rhie, A., Guarracino, A., Yang, C., Wood, J., Tracey, A., Thibaud-Nissen, F., Vollger, M. R., Porubsky, D., Cheng, H., Asri, M., Logsdon, G. A., Carnevali, P., Chaisson, M. J. P., Chin, C. S., Cody, S., Collins, J., Ebert, P., Escalona, M. & 31 others, Fedrigo, O., Fulton, R. S., Fulton, L. L., Garg, S., Gerton, J. L., Ghurye, J., Granat, A., Green, R. E., Harvey, W., Hasenfeld, P., Hastie, A., Haukness, M., Jaeger, E. B., Jain, M., Kirsche, M., Kolmogorov, M., Korbel, J. O., Koren, S., Korlach, J., Lee, J., Li, D., Lindsay, T., Lucas, J., Luo, F., Marschall, T., Mitchell, M. W., McDaniel, J., Nie, F., Zhang, G., Li, H. & Human Pangenome Reference Consortium, H. P. R. C., 2022, In: Nature. 611, 7936, 34 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    SignalP 6.0 predicts all five types of signal peptides using protein language models

    Teufel, Felix Georg, Almagro Armenteros, J. J., Johansen, A. R., Gíslason, M. H., Pihl, S. I., Tsirigos, Konstantinos, Winther, Ole, Brunak, Søren, von Heijne, G. & Nielsen, H., 2022, In: Nature Biotechnology. 40, p. 1023-1025

    Research output: Contribution to journal › Comment/debate › Research

  49. Published

    Single-cell transcriptomic landscape of the sheep rumen provides insights into physiological programming development and adaptation of digestive strategies

    Yuan, Y., Sun, D., Qin, T., Mao, S., Zhu, W., Yin, Y., Huang, J., Heller, Rasmus, Li, Z., Liu, J. & Qiu, Q., 2022, In: Zoological research. 43, 4, p. 634-647 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    Somatic structural variant formation is guided by and influences genome architecture

    Sidiropoulos, N., Mardin, B. R., Rodriguez Gonzalez, Francisco G, Bochkov, I. D., Garg, S., Stuetz, A. M., Korbel, J. O., Aiden, E. L. & Weischenfeldt, Joachim Lütken, 2022, In: Genome Research. 32, 4, p. 643-655

    Research output: Contribution to journal › Journal article › Research › peer-review

  51. Published

    Spatial genetic patterns in African wild dogs reveal signs of effective dispersal across southern Africa

    Tensen, L., Jansen van Vuuren, B., Groom, R., Bertola, Laura, de Iongh, H., Rasmussen, G., Du Plessis, C., Davies-Mostert, H., van der Merwe, D., Fabiano, E., Lages, F., Rocha, F., Monterroso, P. & Godinho, R., 2022, In: Frontiers in Ecology and Evolution. 10, 12 p., 992389.

    Research output: Contribution to journal › Journal article › Research › peer-review

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