Computational and RNA Biology

Targeted conservation genetics of the endangered chimpanzee

Frandsen, P., Fontsere, C., Nielsen, S. V., Hanghøj, Kristian Ebbesen, Castejon-Fernandez, N., Lizano, E., Hughes, D., Hernandez-Rodriguez, J., Korneliussen, Thorfinn Sand, Carlsen, F., Siegismund, Hans Redlef, Mailund, T., Marques-Bonet, T. & Hvilsom, C., 2020, In: Heredity. 125, 1-2, p. 15-27 13 p.

Research output: Contribution to journal › Journal article › Research › peer-review

The Draft Genome of Red Lechwe, Kobus leche leche

Wang, B., Wang, Z., Zhou, J., Liu, W., Lin, Z., Zhang, C., Liu, G., Zhou, B., Wan, W., Zhao, R., Wang, W., Heller, Rasmus & Chen, L., 2020, In: Frontiers in Genetics. 11, 7 p., 582638.

Research output: Contribution to journal › Journal article › Research › peer-review

The RNA exosome shapes the expression of key protein-coding genes

Wu, M., Karadoulama, Evdoxia, Lloret-llinares, M., Rouviere, J. O., Vaagensø, C. S., Moravec, M., Li, B., Wang, J., Wu, G., Gockert, M. A. M., Pelechano, V., Jensen, T. H. & Sandelin, Albin Gustav, 2020, In: Nucleic Acids Research. 48, 15, p. 8509-8528

Research output: Contribution to journal › Journal article › Research › peer-review

The Transcriptional Network That Controls Growth Arrest and Macrophage Differentiation in the Human Myeloid Leukemia Cell Line THP-1

Gazova, I., Lefevre, L., Bush, S. J., Clohisey, S., Arner, E., de Hoon, M., Severin, J., van Duin, Lucas, Andersson, Robin, Lengeling, A., Hume, D. A. & Summers, K. M., 2020, In: Frontiers in Cell and Developmental Biology. 8, 21 p., 498.

Research output: Contribution to journal › Journal article › Research › peer-review

The derived allele of a novel intergenic variant at chromosome 11 associates with lower body mass index and a favorable metabolic phenotype in Greenlanders

Andersen, M. K., Jørsboe, E., Skotte, L., Hanghøj, K., Sandholt, C. H., Moltke, I., Grarup, N., Kern, T., Mahendran, Y., Søborg, B., Bjerregaard, P., Larsen, C. V. L., Dahl-Petersen, I. K., Tiwari, H. K., Feenstra, B., Koch, A., Wiener, H. W., Hopkins, S. E., Pedersen, O., Melbye, M. & 4 others, Boyer, B. B., Jørgensen, M. E., Albrechtsen, Anders & Hansen, Torben, 2020, In: PLOS Genetics. 16, 1, 17 p., e1008544.

Research output: Contribution to journal › Journal article › Research › peer-review

The effect of diabetes and the common diabetogenic TBC1D4 p.Arg684Ter variant on cardiovascular risk in Inuit in Greenland

Overvad, M., Diaz, L. J., Bjerregaard, P., Pedersen, M. L., Larsen, C. V. L., Senftleber, N., Grarup, Niels, Hansen, Torben & Jørgensen, M. E., 2020, In: Scientific Reports. 10, 9 p., 22081.

Research output: Contribution to journal › Journal article › Research › peer-review

The genetic architecture of sporadic and multiple consecutive miscarriage

Laisk, T., Soares, A. L. G., Ferreira, T., Painter, J. N., Censin, J. C., Laber, S., Bacelis, J., Chen, C. Y., Lepamets, M., Lin, K., Liu, S., Millwood, I. Y., Ramu, A., Southcombe, J., Andersen, M. S., Yang, L., Becker, C. M., Børglum, A. D., Gordon, S. D., Bybjerg-Grauholm, J. & 35 others, Helgeland, Ø., Hougaard, D. M., Jin, X., Johansson, S., Juodakis, J., Kartsonaki, C., Kukushkina, V., Lind, P. A., Metspalu, A., Montgomery, G. W., Morris, A. P., Mors, O., Mortensen, P. B., Njølstad, P. R., Nordentoft, Merete, Nyholt, D. R., Lippincott, M., Seminara, S., Salumets, A., Snieder, H., Zondervan, K., Werge, Thomas, Chen, Z., Conrad, D. F., Jacobsson, B., Li, L., Martin, N. G., Neale, B. M., Nielsen, Rasmus, Walters, R. G., Granne, I., Medland, S. E., Mägi, R., Lawlor, D. A. & Lindgren, C. M., 2020, In: Nature Communications. 11, 5980.

Research output: Contribution to journal › Journal article › Research › peer-review

The origin of domestication genes in goats

Zheng, Z., Wang, X., Li, M., Li, Y., Yang, Z., Wang, X., Pan, X., Gong, M., Zhang, Y., Guo, Y., Wang, Y., Liu, J., Cai, Y., Chen, Q., Okpeku, M., Colli, L., Cai, D., Wang, K., Huang, S., Sonstegard, T. S. & 16 others, Esmailizadeh, A., Zhang, W., Zhang, T., Xu, Y., Xu, N., Yang, Y., Han, J., Chen, L., Lesur, J., Daly, K. G., Bradley, D. G., Heller, Rasmus, KU, thw266, Wang, W., Chen, Y. & Jiang, Y., 2020, In: Science Advances. 6, 21, eaaz5216.

Research output: Contribution to journal › Journal article › Research › peer-review

scVAE: variational auto-encoders for single-cell gene expression data

Grønbech, Christopher Heje, Vording, M. F., Timshel, P., Sønderby, C. K., Pers, Tune H & Winther, Ole, 2020, In: Bioinformatics. 36, 16, p. 4415-4422 8 p.

Research output: Contribution to journal › Journal article › Research › peer-review

ERG Controls B Cell Development by Promoting Igh V-to-DJ Recombination

Søndergaard, E., Rauch, A., Michaut, Magali, Rapin, N., Rehn, M., Wilhelmson, Anna, Camponeschi, A., Hasemann, M. S., Bagger, F. O., Jendholm, J., Knudsen, K. J., Mandrup, S., Mårtensson, I. L. & Porse, Bo Torben, 26 Nov 2019, In: Cell Reports. 29, 9, p. 2756-2769.e6 21 p.

Research output: Contribution to journal › Journal article › Research › peer-review

A step-by-step guide to analyzing CAGE data using R/Bioconductor

Thodberg, Malte & Sandelin, Albin Gustav, 18 Jun 2019, In: F1000Research. 8, 49 p., 886.

Research output: Contribution to journal › Journal article › Research › peer-review

Fast and accurate relatedness estimation from high-throughput sequencing data in the presence of inbreeding

Hanghøj, Kristian Ebbesen, Moltke, Ida, Andersen, P. A., Manica, A. & Korneliussen, Thorfinn Sand, May 2019, In: GigaScience. 8, 5, 9 p., giz034.

Research output: Contribution to journal › Journal article › Research › peer-review

Multiplex Genome Engineering for Optimizing Bioproduction in Saccharomyces cerevisiae

Auxillos, Jamie Yam, Garcia-Ruiz, E., Jones, S., Li, T., Jiang, S., Dai, J. & Cai, Y., 19 Mar 2019, In: Biochemistry. 58, 11, p. 1492-1500 9 p.

Research output: Contribution to journal › Review › Research › peer-review

Comprehensive profiling of the fission yeast transcription start site activity during stress and media response

Thodberg, Malte, Thieffry, A., Lange, Jette Bornholdt, Boyd, M., Holmberg, Christian, Azad, A., Workman, C. T., Chen, Y., Ekwall, K., Nielsen, Olaf & Sandelin, Albin Gustav, 28 Feb 2019, In: Nucleic Acids Research. 47, 4, p. 1671-1691 21 p.

Research output: Contribution to journal › Journal article › Research › peer-review

SignalP 5.0 improves signal peptide predictions using deep neural networks

Armenteros, J. J. A., Tsirigos, Konstantinos, Sønderby, C. K., Petersen, T. N., Winther, Ole, Brunak, Søren, von Heijne, G. & Nielsen, H., 18 Feb 2019, In: Nature Biotechnology. 37, 4, p. 420-423

Research output: Contribution to journal › Journal article › Communication

Global network of computational biology communities: ISCB's Regional Student Groups breaking barriers [version 1; peer review: not peer reviewed]

Shome, S., Parra, R. G., Fatima, N., Monzon, A. M., Cuypers, B., Moosa, Y., Coimbra, N. D. R., Assis, J., Giner-Delgado, C., Dönertaş, H. M., Cuesta-Astroz, Y., Saarunya, G., Allali, I., Gupta, S., Srivastava, A., Kalsan, M., Valdivia, C., Olguin-Orellana, G. J., Papadimitriou, S., Parisi, D. & 22 others, Kristensen, N. P., Rib, Leonor, Guebila, M. B., Bauer, E., Zaffaroni, G., Bekkar, A., Ashano, E., Paladin, L., Necci, M., Moreyra, N. N., Rydén, M., Villalobos-Solís, J., Papadopoulos, N., Rafael, C., Karakulak, T., Kaya, Y., Gladbach, Y., Dhanda, S. K., Šoštarić, N., Alex, A., DeBlasio, D. & Rahman, F., 1 Jan 2019, In: F1000Research. 8, 9 p., 1574.

Research output: Contribution to journal › Editorial › Research

A Functional Link between Nuclear RNA Decay and Transcriptional Control Mediated by the Polycomb Repressive Complex 2

Garland, W., Comet, I., Wu, M., Radzisheuskaya, A., Rib, Leonor, Vitting-Seerup, K., Lloret-Llinares, M., Sandelin, Albin Gustav, Helin, K. & Jensen, T. H., 2019, In: Cell Reports. 29, 7, p. 1800-1811 12 p.

Research output: Contribution to journal › Journal article › Research › peer-review

A perspective on inverse design of battery interphases using multi-scale modelling, experiments and generative deep learning

Bhowmik, A., Castelli, I. E., Garcia-Lastra, J. M., Bjørn-Jørgensen, P., Winther, Ole & Vegge, T., 2019, In: Energy Storage Materials. 21, p. 446-456

Research output: Contribution to journal › Review › Research › peer-review

Allele frequency-free inference of close familial relationships from genotypes or low-depth sequencing data

Waples, R. K., Albrechtsen, Anders & Moltke, Ida, 2019, In: Molecular Ecology. 28, 1, p. 35-48 14 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Ancestry-specific association mapping in admixed populations

Skotte, L., Jørsboe, E., Korneliussen, Thorfinn Sand, Moltke, Ida & Albrechtsen, Anders, 2019, In: Genetic Epidemiology. 43, 5, p. 506-521

Research output: Contribution to journal › Journal article › Research › peer-review

Biological adaptations in the Arctic cervid, the reindeer (Rangifer tarandus)

Lin, Z., Chen, L., Chen, X., Zhong, Y., Yang, Y., Xia, W., Liu, C., Zhu, W., Wang, H., Yan, B., Yang, Y., Liu, X., Kvie, K. S., Røed, K. H., Wang, K., Xiao, W., Wei, H., Li, G., Heller, R., Gilbert, M. T. P. & 3 others, Qiu, Q., Wang, W. & Li, Z., 2019, In: Science. 364, 6446, p. 1154-+ 7 p., eaav6312.

Research output: Contribution to journal › Journal article › Research › peer-review

CAGEfightR: analysis of 5'-end data using R/Bioconductor

Thodberg, Malte, Thieffry, A., Vitting-Seerup, K., Andersson, Robin & Sandelin, Albin Gustav, 2019, In: BMC Bioinformatics. 20, 13 p., 487.

Research output: Contribution to journal › Journal article › Research › peer-review

Catchment properties and the photosynthetic trait composition of freshwater plant communities

Iversen, L. L., Winkel, A., Baastrup-Spohr, L., Hinke, A. B., Alahuhta, J., Baattrup-Pedersen, A., Birk, S., Brodersen, P., Chambers, P. A., Ecke, F., Feldmann, T., Gebler, D., Heino, J., Jespersen, T. S., Moe, S. J., Riis, T., Sass, L., Vestergaard, O., Maberly, S. C., Sand-jensen, K. & 1 others, Pedersen, Ole, 2019, In: Science. 366, 6467, p. 878-881 4 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Complete Inactivation of Sebum-Producing Genes Parallels the Loss of Sebaceous Glands in Cetacea

Lopes-Marques, M., Machado, A. M., Alves, L. Q., Fonseca, M. M., Barbosa, S., Sinding, M. S., Rasmussen, M. H., Iversen, M. R., Bertelsen, Mads Frost, Campos, P. F., Rodrigues da Fonseca, Rute Andreia, Ruivo, R. & Castro, L. F. C., 2019, In: MOLECULAR BIOLOGY AND EVOLUTION . 36, 6, p. 1270-1280

Research output: Contribution to journal › Journal article › Research › peer-review

Comprehensive search for accessory proteins encoded with archaeal and bacterial type III CRISPR-cas gene cassettes reveals 39 new cas gene families

Shah, S. A., Alkhnbashi, O. S., Behler, J., Han, W., She, Q., Hess, W. R., Garrett, Roger Antony & Backofen, R., 2019, In: RNA Biology. 16, 4, p. 530-542 13 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Computational and cellular studies reveal structural destabilization and degradation of MLH1 variants in Lynch syndrome

Abildgaard, A. B., Stein, Amelie, Nielsen, S. V., Schultz-Knudsen, Katrine, Papaleo, E., Shrikhande, A., Hoffmann, Eva, Bernstein, I., Gerdes, Anne-Marie Axø, Takahashi, M., Ishioka, C., Lindorff-Larsen, Kresten & Hartmann-Petersen, Rasmus, 2019, In: eLife. 8, 28 p., e49138 .

Research output: Contribution to journal › Journal article › Research › peer-review

Consequences of breed formation on patterns of genomic diversity and differentiation: the case of highly diverse peripheral Iberian cattle

Rodrigues da Fonseca, Rute Andreia, Urena, I., Afonso, S., Pires, A. E., Jørsboe, E., Chikhi, L. & Ginja, C., 2019, In: BMC Genomics. 20, p. 1-13 334.

Research output: Contribution to journal › Journal article › Research › peer-review

DamMet: ancient methylome mapping accounting for errors, true variants, and post-mortem DNA damage

Hanghøj, Kristian Ebbesen, Renaud, Gabriel, Albrechtsen, Anders & Orlando, L., 2019, In: GigaScience. 8, 4, 6 p., giz025.

Research output: Contribution to journal › Journal article › Research › peer-review

Deconvolution of autoencoders to learn biological regulatory modules from single cell mRNA sequencing data

Kinalis, S., Nielsen, Finn Cilius, Winther, Ole & Bagger, F. O., 2019, In: BMC Bioinformatics. 20, 9 p., 379.

Research output: Contribution to journal › Journal article › Research › peer-review

Detecting sequence signals in targeting peptides using deep learning

Almagro Armenteros, J. J., Salvatore, Marco, Emanuelsson, O., Winther, Ole, von Heijne, G., Elofsson, A. & Nielsen, H., 2019, In: Life Science Alliance. 2, 5, 14 p., 201900429.

Research output: Contribution to journal › Journal article › Research › peer-review

Detection of internal N7-methylguanosine (m⁷G) RNA modifications by mutational profiling sequencing

Enroth, Christel Hougård, Poulsen, L. D., Iversen, S., Kirpekar, F., Albrechtsen, Anders & Vinther, Jeppe, 2019, In: Nucleic Acids Research. 47, 20, 13 p., e126.

Research output: Contribution to journal › Journal article › Research › peer-review

Excess primer degradation by Exo I improves the preparation of 3' cDNA ligation-based sequencing libraries

Enroth, Christel Hougård, Fehler, A. O., Poulsen, L. D. & Vinther, Jeppe, 2019, In: BioTechniques. 67, 3, p. 110-116

Research output: Contribution to journal › Journal article › Research › peer-review

Fast Translation within the First 45 Codons Decreases mRNA Stability and Increases Premature Transcription Termination in E. coli

Pedersen, Steen, Terkelsen, Thilde Bagger, Eriksen, M., Hauge, M. K., Lund, C. C., Sneppen, Kim & Mitarai, Namiko, 2019, In: Journal of Molecular Biology. 431, 6, p. 1088-1097 10 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Genetic basis of ruminant headgear and rapid antler regeneration

Wang, Y., Zhang, C., Wang, N., Li, Z., Heller, R., Liu, R., Zhao, Y., Han, J., Pan, X., Zheng, Z., Dai, X., Chen, C., Dou, M., Peng, S., Chen, X., Liu, J., Li, M., Wang, K., Liu, C., Lin, Z. & 18 others, Chen, L., Hao, F., Zhu, W., Song, C., Zhao, C., Zheng, C., Wang, J., Hu, S., Li, C., Yang, H., Jiang, L., Li, G., Liu, M., Sonstegard, T. S., KU, thw266, Jiang, Y., Wang, W. & Qiu, Q., 2019, In: Science. 364, 6446, p. 1153-+ eaav6335.

Research output: Contribution to journal › Journal article › Research › peer-review

Genomic diversity and novel genome-wide association with fruit morphology in Capsicum, from 746k polymorphic sites

Colonna, V., D’Agostino, N., Garrison, E., Albrechtsen, Anders, Meisner, Jonas, Facchiano, A., Cardi, T. & Tripodi, P., 2019, In: Scientific Reports. 9, 14 p., 10067.

Research output: Contribution to journal › Journal article › Research › peer-review

Global phylogeography and ancient evolution of the widespread human gut virus crAssphage

Edwards, R. A., Vega, A. A., Norman, H. M., Ohaeri, M., Levi, K., Dinsdale, E. A., Cinek, O., Aziz, R. K., McNair, K., Barr, J. J., Bibby, K., Brouns, S. J. J., Cazares, A., de Jonge, P. A., Desnues, C., Díaz Muñoz, S. L., Fineran, P. C., Kurilshikov, A., Lavigne, R., Mazankova, K. & 97 others, McCarthy, D. T., Nobrega, F. L., Reyes Muñoz, A., Tapia, G., Trefault, N., Tyakht, A. V., Vinuesa, P., Wagemans, J., Zhernakova, A., Aarestrup, F. M., Ahmadov, G., Alassaf, A., Anton, J., Asangba, A., Billings, E. K., Cantu, V. A., Carlton, J. M., Cazares, D., Cho, G., Condeff, T., Cortés, P., Cranfield, M., Cuevas, D. A., De la Iglesia, R., Decewicz, P., Doane, M. P., Dominy, N. J., Dziewit, L., Elwasila, B. M., Eren, A. M., Franz, C., Fu, J., Garcia-Aljaro, C., Ghedin, E., Gulino, K. M., Haggerty, J. M., Head, S. R., Hendriksen, R. S., Hill, C., Hyöty, H., Ilina, E. N., Irwin, M. T., Jeffries, T. C., Jofre, J., Junge, R. E., Kelley, S. T., Khan Mirzaei, M., Kowalewski, M., Kumaresan, D., Leigh, S. R., Lipson, D., Lisitsyna, E. S., Llagostera, M., Maritz, J. M., Marr, L. C., McCann, A., Molshanski-Mor, S., Monteiro, S., Moreira-Grez, B., Morris, M., Mugisha, L., Muniesa, M., Neve, H., Nguyen, N. P., Nigro, O. D., Nilsson, A. S., O’Connell, T., Odeh, R., Oliver, A., Piuri, M., Prussin, A. J., Qimron, U., Quan, Z. X., Rainetova, P., Ramírez-Rojas, A., Raya, R., Reasor, K., Rice, G. A. O., Rossi, A., Santos, R., Shimashita, J., Stachler, E. N., Stene, L. C., Strain, R., Stumpf, R., Torres, P. J., Twaddle, A., Ugochi Ibekwe, M. A., Villagra, N., Wandro, S., White, B., Whiteley, A., Whiteson, K. L., Wijmenga, C., Zambrano, M. M., Zschach, Henrike & Dutilh, B. E., 2019, In: Nature Microbiology. 4, p. 1727-1736

Research output: Contribution to journal › Journal article › Research › peer-review

IsoformSwitchAnalyzeR: analysis of changes in genome-wide patterns of alternative splicing and its functional consequences

Vitting-Seerup, K. & Sandelin, Albin Gustav, 2019, In: Bioinformatics. 35, 21, p. 4469-4471

Research output: Contribution to journal › Journal article › Research › peer-review

Joint Estimates of Heterozygosity and Runs of Homozygosity for Modern and Ancient Samples

Renaud, Gabriel, Hanghøj, Kristian Ebbesen, Korneliussen, Thorfinn Sand, Willerslev, Eske & Orlando, L., 2019, In: Genetics (Print). 212, 3, p. 587-614 28 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Lack of the Major Multifunctional Catalase KatA in Pseudomonas aeruginosa Accelerates Evolution of Antibiotic Resistance in Ciprofloxacin-Treated Biofilms

Ahmed, M. N., Porse, A., Abdelsamad, A., Sommer, M., Høiby, Niels & Ciofu, Oana, 2019, In: Antimicrobial Agents and Chemotherapy. 63, 10, 12 p., e00766-19.

Research output: Contribution to journal › Journal article › Research › peer-review

Langevin diffusions on the torus: estimation and applications

García-Portugués, E., Sørensen, Michael, Mardia, K. V. & Hamelryck, Thomas Wim, 2019, In: Statistics and Computing. 29, 1, p. 1-22 22 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Large expert-curated database for benchmarking document similarity detection in biomedical literature search

Brown, P., Tan, A-C., El-Esawi, M. A., Liehr, T., Blanck, O., Gladue, D. P., Almeida, G. M. F., Cernava, T., Sorzano, C. O., Yeung, A. W. K., Engel, M. S., Chandrasekaran, A. R., Muth, T., Staege, M. S., Daulatabad, S. V., Widera, D., Zhang, J., Meule, A., Honjo, K., Pourret, O. & 1,560 others, Yin, C., Zhang, Z., Cascella, M., Flegel, W. A., Goodyear, C. S., van Raaij, M. J., Bukowy-Bieryllo, Z., Campana, L. G., Kurniawan, N. A., Lalaouna, D., Huttner, F. J., Ammerman, B. A., Ehret, F., Cobine, P. A., Tan, E., Han, H., Xia, W., McCrum, C., Dings, R. P. M., Marinello, F., Nilsson, H., Nixon, B., Voskarides, K., Yang, L., Costa, V. D., Bengtsson-Palme, J., Bradshaw, W., Grimm, D. G., Kumar, N., Martis, E., Prieto, D., Sabnis, S. C., Amer, S. E. D. R., Liew, A. W. C., Perco, P., Rahimi, F., Riva, G., Zhang, C., Devkota, H. P., Ogami, K., Basharat, Z., Fierz, W., Siebers, R., Tan, K., Boehme, K. A., Brenneisen, P., Brown, J. A. L., Dalrymple, B. P., Harvey, D. J., Ng, G., Werten, S., Bleackley, M., Dai, Z., Dhariwal, R., Gelfer, Y., Hartmann, M. D., Miotla, P., Tamaian, R., Govender, P., Gurney-Champion, O. J., Kauppila, J. H., Zhang, X., Echeverria, N., Subhash, S., Sallmon, H., Tofani, M., Bae, T., Bosch, O., Cuiv, P. O., Danchin, A., Diouf, B., Eerola, T., Evangelou, E., Filipp, F. V., Klump, H., Kurgan, L., Smith, S. S., Terrier, O., Tuttle, N., Ascher, D. B., Janga, S. C., Schulte, L. N., Becker, D., Browngardt, C., Bush, S. J., Gaullier, G., Ide, K., Meseko, C., Werner, G. D. A., Zaucha, J., Al-Farha, A. A., Greenwald, N. F., Popoola, S. I., Rahman, M. S., Xu, J., Yang, S. Y., Hiroi, N., Alper, O. M., Baker, C. I., Bitzer, M., Chacko, G., Debrabant, B., Dixon, R., Forano, E., Gilliham, M., Kelly, S., Klempnauer, K., Lidbury, B. A., Lin, M. Z., Lynch, I., Ma, W., Maibach, E. W., Mather, D. E., Nandakumar, K. S., Ohgami, R. S., Parchi, P., Tressoldi, P., Xue, Y., Armitage, C., Barraud, P., Chatzitheochari, S., Coelho, L. P., Diao, J., Doxey, A. C., Gobet, A., Hu, P., Kaiser, S., Mitchell, K. M., Salama, M. F., Shabalin, I. G., Song, H., Stevanovic, D., Yadollahpour, A., Zeng, E., Zinke, K., Alimba, C. G., Beyene, T. J., Cao, Z., Chan, S. S., Gatchell, M., Kleppe, A., Piotrowski, M., Torga, G., Woldesemayat, A. A., Cosacak, M. I., Haston, S., Ross, S. A., Williams, R., Wong, A., Abramowitz, M. K., Effiong, A., Lee, S., Abid, M. B., Agarabi, C., Alaux, C., Albrecht, D. R., Atkins, G. J., Beck, C. R., Bonvin, A. M. J. J., Bourke, E., Brand, T., Braun, R. J., Bull, J. A., Cardoso, P., Carter, D., Delahay, R. M., Ducommun, B., Duijf, P. H. G., Epp, T., Eskelinen, E., Fallah, M., Farber, D. B., Fernandez-Triana, J., Feyerabend, F., Florio, T., Friebe, M., Furuta, S., Gabrielsen, M., Gruber, J., Grybos, M., Han, Q., Heinrich, M., Helantera, H., Huber, M., Jeltsch, A., Jiang, F., Josse, C., Jurman, G., Kamiya, H., de Keersmaecker, K., Kristiansson, E., de Leeuw, F., Li, J., Liang, S., Lopez-Escamez, J. A., Lopez-Ruiz, F. J., Marchbank, K. J., Marschalek, R., Martin, C. S., Miele, A. E., Montagutelli, X., Morcillo, E., Nicoletti, R., Niehof, M., O'Toole, R., Ohtomo, T., Oster, H., Palma, J., Paterson, R., Peifer, M., Portilla, M., Portillo, M. C., Pritchard, A. L., Pusch, S., Raghava, G. P. S., Roberts, N. J., Ross, K., Schuele, B., Sergeant, K., Shen, J., Stella, A., Sukocheva, O., Uversky, V. N., Vanneste, S., Villet, M. H., Viveiros, M., Vorholt, J. A., Weinstock, C., Yamato, M., Zabetakis, I., Zhao, X., Ziegler, A., Aizat, W. M., Atlas, L., Bridges, K. M., Chakraborty, S., Deschodt, M., Domingues, H. S., Esfahlani, S. S., Falk, S., Guisado, J. L., Kane, N. C., Kueberuwa, G., Lau, C. L., Liang, D., Liu, E., Luu, A. M., Ma, C., Ma, L., Moyer, R., Norris, A. D., Panthee, S., Parsons, J. R., Peng, Y., Pinto, I. M., Reschke, C. R., Sillanpaa, E., Stewart, C. J., Uhle, F., Yang, H., Zhou, K., Zhu, S., Ashry, M., Bergsland, N., Berthold, M., Chen, C., Colella, V., Cuypers, M., Eskew, E. 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Research output: Contribution to journal › Journal article › Research › peer-review

Large-scale ruminant genome sequencing provides insights into their evolution and distinct traits

Chen, L., Qin, Q., Jiang, Y., Wang, K., Lin, Z., Li, Z., Bibi, F., Yang, Y., Wang, J., Nie, W., Su, W., Liu, G., Li, Q., Fu, W., Pan, X., Liu, C., Yang, J., Zhang, C., Yin, Y., Wang, Y. & 32 others, Zhao, Y., Zhang, C., Wang, Z., Qin, Y., Liu, W., Wang, B., Ren, Y., Zhang, R., Zeng, Y., Rodrigues da Fonseca, Rute Andreia, Wei, B., Li, R., Wan, W., Zhao, R., Zhu, W., Wang, Y., Duan, S., Gao, Y., Zhang, Y. E., Chen, C., Hvilsom, C., Epps, C. W., Chemnick, L. G., Doug, Y., Mirarab, S., Siegismund, Hans Redlef, Ryder, O. A., Gilbert, M Thomas P, Lewin, H. A., KU, thw266, Heller, Rasmus & Wang, W., 2019, In: Science. 364, 6446, p. 1152-

Research output: Contribution to journal › Journal article › Research › peer-review

More grist for the mill? Species delimitation in the genomic era and its implications for conservation

Stanton, D. W. G., Frandsen, P., Waples, R. K., Heller, Rasmus, Russo, I. M., Orozco-terWengel, P. A., Pedersen, C. T., Siegismund, Hans Redlef & Bruford, M. W., 2019, In: Conservation Genetics. 20, 1, p. 101-113

Research output: Contribution to journal › Journal article › Research › peer-review

Mutant CEBPA directly drives the expression of the targetable tumor-promoting factor CD73 in AML

Jakobsen, J. S., Laursen, L. G., Schuster, Mikkel Bruhn, Pundhir, Sachin, Schoof, E., Ge, Y., d'Altri, T., Vitting-Seerup, K., Rapin, N., Gentil, C., Jendholm, J., Theilgaard-Mønch, Kim, Reckzeh, K., Bullinger, L., Döhner, K., Hokland, P., Fitzgibbon, J. & Porse, Bo Torben, 2019, In: Science Advances. 5, 7, p. 1-16 16 p., eaaw4304.

Research output: Contribution to journal › Journal article › Research › peer-review

NetSurfP-2.0: improved prediction of protein structural features by integrated deep learning

Klausen, M. S., Jespersen, M. C., Nielsen, H., Jensen, K. K., Jurtz, V. I., Sønderby, C. K., Sommer, M. O. A., Winther, Ole, Nielsen, M., Petersen, Bent & Marcatili, P., 2019, In: Proteins: Structure, Function and Bioinformatics. 87, 6, p. 520-527

Research output: Contribution to journal › Journal article › Research › peer-review