- 2022
- E-pub ahead of print
NetSurfP-3.0: accurate and fast prediction of protein structural features by protein language models and deep learning
Høie, Magnus Haraldson, Kiehl, E. N., Petersen, Bent, Nielsen, M., Winther, Ole, Nielsen, H., Hallgren, J. & Marcatili, P., 1 Jun 2022, (E-pub ahead of print) In: Nucleic Acids Research. 6 p., gkac439.Research output: Contribution to journal › Journal article › Research › peer-review
- E-pub ahead of print
Integrating convolution and self-attention improves language model of human genome for interpreting non-coding regions at base-resolution
YANG, Meng, Huang, L., Huang, H., Tang, H., Zhang, N., Yang, H., Wu, J. & Mu, F., 10 May 2022, (E-pub ahead of print) In: Nucleic Acids Research. 19 p.Research output: Contribution to journal › Journal article › Research › peer-review
- E-pub ahead of print
PAMP-triggered genetic reprogramming involves widespread alternative transcription initiation and an immediate transcription factor wave
Thieffry, A., Lopéz Márquez, Diego, Bornholdt, J., Gholami Malekroudi, Mojgan, Bressendorff, S., Barghetti, A., Sandelin, Albin Gustav & Brodersen, Peter, 11 Apr 2022, (E-pub ahead of print) In: The Plant Cell. 23 p.Research output: Contribution to journal › Journal article › Research › peer-review
- E-pub ahead of print
DeepLoc 2.0: multi-label subcellular localization prediction using protein language models
Thumuluri, V., Almagro Armenteros, J. J., Johansen, A. R., Nielsen, H. & Winther, Ole, Apr 2022, (E-pub ahead of print) In: Nucleic Acids Research.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
African climate and geomorphology drive evolution and ghost introgression in sable antelope
Rocha, J. L., Vaz Pinto, P., Siegismund, Hans Redlef, Meyer, M., Jansen van Vuuren, B., Veríssimo, L., Ferrand, N. & Godinho, R., 2022, In: Molecular Ecology. 31, 10, p. 2968-2984 17 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
An update on principles of m6A targeting
Bai, Bing, 2022, In: Trends in Plant Science. 27, 3, p. 224-226 3 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Ancient and historical DNA in conservation policy
Jensen, E. L., Díez-del-Molino, D., Gilbert, M Thomas P, Bertola, Laura, Borges, F., Cubric-Curik, V., de Navascués, M., Frandsen, P., Heuertz, M., Hvilsom, C., Jiménez-Mena, B., Miettinen, A., Moest, M., Chrzanová Pecnerová, Patrícia, Barnes, I. & Vernesi, C., 2022, In: Trends in Ecology and Evolution. 37, 5, p. 420-429 10 p.Research output: Contribution to journal › Review › Research › peer-review
- Published
Bioinformatics of transcription factor binding prediction
Navarro-Delgado, E. I., Salgado-Albarrán, M., Torres-Arciga, K., Alcaraz, N., Soto-Reyes, E., Herrera, L. A. & González-Barrios, R., 2022, Bioinformatics and Human Genomics Research. CRC Press, p. 203-221 19 p.Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
CRISPR/Cas9 gRNA activity depends on free energy changes and on the target PAM context
Corsi, Giulia, Qu, Kunli, Alkan, F., Pan, X., Luo, Y. & Gorodkin, Jan, 2022, In: Nature Communications. 13, 14 p., 3006.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Calibrated uncertainty for molecular property prediction using ensembles of message passing neural networks
Busk, J., Jørgensen, P. B., Bhowmik, A., Schmidt, M. N., Winther, Ole & Vegge, T., 2022, In: Machine Learning: Science and Technology. 3, 1, 12 p., 015012.Research output: Contribution to journal › Journal article › Research › peer-review
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Reconstructing genome evolution in historic samples of the Irish potato famine pathogen
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Natural selection affects multiple aspects of genetic variation at putatively peutral sites across the human genome
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5078
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True single-molecule DNA sequencing of a pleistocene horse bone
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Latest publications
NetSurfP-3.0: accurate and fast prediction of protein structural features by protein language models and deep learning
Research output: Contribution to journal › Journal article › Research › peer-review
Integrating convolution and self-attention improves language model of human genome for interpreting non-coding regions at base-resolution
Research output: Contribution to journal › Journal article › Research › peer-review
PAMP-triggered genetic reprogramming involves widespread alternative transcription initiation and an immediate transcription factor wave
Research output: Contribution to journal › Journal article › Research › peer-review