Jeppe Vinther
Associate Professor
Computational and RNA Biology
Ole Maaløes Vej 5
2200 København N.
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Identification of let-7-regulated oncofetal genes.
Boyerinas, B., Park, S., Shomron, N., Hedegaard, M. M., Vinther, Jeppe, Andersen, J. S., Feig, C., Xu, J., Burge, C. B. & Peter, M. E., 2008, In: Cancer Research. 68, 8, p. 2587-91 4 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Detection of internal N7-methylguanosine (m7G) RNA modifications by mutational profiling sequencing
Enroth, Christel Hougård, Poulsen, L. D., Iversen, S., Kirpekar, F., Albrechtsen, Anders & Vinther, Jeppe, 2019, In: Nucleic Acids Research. 47, 20, 13 p., e126.Research output: Contribution to journal › Journal article › Research › peer-review
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Excess primer degradation by Exo I improves the preparation of 3' cDNA ligation-based sequencing libraries
Enroth, Christel Hougård, Fehler, A. O., Poulsen, L. D. & Vinther, Jeppe, 2019, In: BioTechniques. 67, 3, p. 110-116Research output: Contribution to journal › Journal article › Research › peer-review
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Flagella disruption in Bacillus subtilis increases amylase production yield
Fehler, A. O., Kallehauge, T. B., Geissler, Adrian Sven, González-Tortuero, E., Seemann, Ernst Stefan, Gorodkin, Jan & Vinther, Jeppe, 2022, In: Microbial Cell Factories. 21, 11 p., 131.Research output: Contribution to journal › Journal article › Research › peer-review
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Mutation of miRNA target sequences during human evolution.
Gardner, P. P. & Vinther, Jeppe, 2008, In: Trends in Genetics. 24, 6, p. 262-5 3 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Light-Dependent Translation Change of Arabidopsis psbA Correlates with RNA Structure Alterations at the Translation Initiation Region
Gawroński, P., Enroth, Christel Hougård, Kindgren, P., Marquardt, Sebastian, Karpiński, S., Leister, D., Jensen, Poul Erik, Vinther, Jeppe & Scharff, L. B., 2021, In: Cells. 10, 2, 22 p., 322.Research output: Contribution to journal › Journal article › Research › peer-review
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The impact of PrsA over-expression on the Bacillus subtilis transcriptome during fed-batch fermentation of alpha-amylase production
Geissler, Adrian Sven, Poulsen, L. D., Doncheva, Nadezhda Tsankova, Anthon, Christian, Seemann, Ernst Stefan, González-Tortuero, E., Breüner, A., Jensen, Lars Juhl, Hjort, C., Vinther, Jeppe & Gorodkin, Jan, 2022, In: Frontiers in Microbiology. 13, 17 p., 909493.Research output: Contribution to journal › Journal article › Research › peer-review
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CRISPRi screen for enhancing heterologous alpha-amylase yield in Bacillus subtilis
Geissler, Adrian Sven, Fehler, A. O., Poulsen, L. D., Gonzalez-Tortuero, E., Kallehauge, T. B., Alkan, F., Anthon, Christian, Seemann, Ernst Stefan, Rasmussen, M. D., Breuener, A., Hjort, C., Vinther, Jeppe & Gorodkin, Jan, 2023, In: Journal of Industrial Microbiology and Biotechnology. 50, 1, 16 p., kuac028.Research output: Contribution to journal › Journal article › Research › peer-review
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Bsgatlas: A unified bacillus subtilis genome and transcriptome annotation atlas with enhanced information access
Geissler, Adrian Sven, Anthon, Christian, Alkan, F., González-Tortuero, E., Poulsen, L. D., Kallehauge, T. B., Breüner, A., Seemann, Ernst Stefan, Vinther, Jeppe & Gorodkin, Jan, 2021, In: Microbial Genomics. 7, 2, 17 p., 000524.Research output: Contribution to journal › Journal article › Research › peer-review
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A putative promotor within the E6 ORF of human papillomavirus type 16 controls the expression of the E7 oncoprotein from a monocistronic mRNA
Glahder, J., Hansen, C. N., Vinther, Jeppe, Madsen, B. S. & Norrild, B., 2003, In: Journal of General Virology. 84, p. 3429-3441Research output: Contribution to journal › Journal article › Research › peer-review
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The early noncoding region of human papillomavirus type 16 is regulated by cytoplasmic polyadenylation factors
Glahder, J. H., Kristiansen, K., Durand, M., Vinther, Jeppe & Norrild, B., 2010, In: Virus Research. 149, 2, p. 217-223 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
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A promoter within the E6 ORF of human papillomavirus type 16 contributes to the expression of the E7 oncoprotein from a monocistronic mRNA
Glahder, J. H., Hansen, C. N., Vinther, Jeppe, Madsen, B. S. & Norrild, B., 2003, In: Journal of General Virology. 84, Pt 12, p. 3429-41 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Origin of introns by 'intronization' of exonic sequences.
Irimia, M., Rukov, J. L., Penny, D., Vinther, Jeppe, Garcia-Fernandez, J. & Roy, S. W., 2008, In: Trends in Genetics.Research output: Contribution to journal › Journal article › Research › peer-review
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Quantitative regulation of alternative splicing in evolution and development
Irimia, M., Rukov, J. L., Roy, S. W., Vinther, Jeppe & Garcia-Fernandez, J., 2009, In: BioEssays. 31, 1, p. 40-50 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Widespread evolutionary conservation of alternatively spliced exons in caenorhabditis.
Irimia, M., Rukov, J. L., Penny, D., Garcia-Fernandez, J., Vinther, Jeppe & Roy, S. W., 2007, In: Molecular Biology and Evolution. 25, 2, p. 375-82 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Detection of reverse transcriptase termination sites using cDNA ligation and massive parallel sequencing
Kielpinski, L. J., Boyd, M., Sandelin, Albin Gustav & Vinther, Jeppe, 2013, In: Methods in molecular biology (Clifton, N.J.). 1038, p. 213-31 19 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Reproducible analysis of sequencing-based RNA structure probing data with user-friendly tools
Kielpinski, L. J., Sidiropoulos, N. & Vinther, Jeppe, 2015, Structures of large RNA molecules and their complexes. Woodson, S. A. & Allain, F. H. T. (eds.). Elsevier, p. 153-180 28 p. (Methods in Enzymology, Vol. 558).Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
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Massive parallel-sequencing-based hydroxyl radical probing of RNA accessibility
Kielpinski, L. J. & Vinther, Jeppe, 2014, In: Nucleic Acids Research. 42, 8, 12 p., e70.Research output: Contribution to journal › Journal article › Research › peer-review
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RNase H sequence preferences influence antisense oligonucleotide efficiency
Kiełpiński, Ł. J., Hagedorn, P. H., Lindow, M. & Vinther, Jeppe, 15 Dec 2017, In: Nucleic Acids Research. 45, 22, p. 12932-12944 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Body fluid identification of blood, saliva and semen using second generation sequencing of micro-RNA
Petersen, C. H., Hjort, B. B., Tvedebrink, T., Kielpinski, L. J., Vinther, Jeppe & Morling, Niels, 2013, In: Forensic Science International: Genetics Supplement Series. 4, 1, p. e204-5 2 p.Research output: Contribution to journal › Journal article › Research › peer-review
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SHAPE selection (SHAPES) enrich for RNA structure signal in SHAPE sequencing-based probing data
Poulsen, L. D., Kielpinski, L. J., Salama, S. R., Krogh, Anders & Vinther, Jeppe, 2015, In: R N A. 21, 5, p. 1042-1052 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
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RNA-Seq for Bacterial Gene Expression
Poulsen, L. D. & Vinther, Jeppe, 2018, In: Current Protocols in Nucleic Acid Chemistry. 73, 1, p. 1-12 e55.Research output: Contribution to journal › Journal article › Research › peer-review
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Identification and characterization of a cluster of transcription start sites located in the E6 ORF of human papillomavirus type 16
Rosenstierne, M. W., Vinther, Jeppe, Hansen, C. N., Prydsoe, M. & Norrild, B., 2003, In: Journal of General Virology. 84, Pt 11, p. 2909-20 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Conserved CPEs in the p53 3' untranslated region influence mRNA stability and protein synthesis
Rosenstierne, M. W., Vinther, Jeppe, Mittler, G., Larsen, L., Mann, M. & Norrild, B., 2008, In: Anticancer Research. 28, 5A, p. 2553-9 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Identification and characterisation of a cluster of transcription start sites in the E6 ORF of the Human Papillomavirus type 16
Rosenstierne, M., Vinther, Jeppe, Hansen, C., Fenger-Grøn, M. & Norrild, B., 2003, In: J.Gen.Virol.. 84, p. 2909-2920Research output: Contribution to journal › Journal article › Research › peer-review
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Pharmacogenomics genes show varying perceptibility to microRNA regulation
Rukov, J. L., Vinther, Jeppe & Shomron, N., 2011, In: Pharmacogenetics and Genomics. 21, 5, p. 251-62 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Pharmaco-miR: linking microRNAs and drug effects
Rukov, J. L., Wilentzik, R., Jaffe, I., Vinther, Jeppe & Shomron, N., 2014, In: Briefings in Bioinformatics. 15, 4, p. 648-659 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Effect of chronic uremia on the transcriptional profile of the calcified aorta analyzed by RNA sequencing
Rukov, J. L., Gravesen, Eva, Mace, M. L., Hofman-Bang, J., Vinther, Jeppe, Andersen, C. B., Lewin, E. & Ølgaard, Klaus, 2016, In: American Journal of Physiology: Renal Physiology. 310, 6, p. F477-F491 18 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Dissecting the target specificity of RNase H recruiting oligonucleotides using massively parallel reporter analysis of short RNA motifs
Rukov, J. L., Hagedorn, P. H., Høy, I. B., Feng, Y., Lindow, M. & Vinther, Jeppe, 2015, In: Nucleic Acids Research. 43, 17, p. 8476-8487 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
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High qualitative and quantitative conservation of alternative splicing in Caenorhabditis elegans and Caenorhabditis briggsae.
Rukov, J. L., Irimia, M., Mørk, S., Lund, Viktor Karlovich, Vinther, Jeppe & Arctander, P., 2007, In: Molecular Biology and Evolution. 24, 4, p. 909-17 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Hepatitis C virus RNA is 5'-capped with flavin adenine dinucleotide
Sherwood, A. V., Rivera-Rangel, L. R., Ryberg, L. A., Larsen, H. S., Anker, K. M., Costa, R., Vågbø, C. B., Jakljevič, E., Pham, L. V., Fernandez-Antunez, C., Indrisiunaite, G., Podolska-Charlery, A., Grothen, J. E. R., Langvad, N. W., Fossat, N., Offersgaard, A., Al-Chaer, A., Nielsen, L., Kuśnierczyk, A., Sølund, C. & 8 others, , 2023, In: Nature. 619, p. 811-818Research output: Contribution to journal › Journal article › Research › peer-review
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MicroRNAs and Their Antagonists as Novel Therapeutics
Vinther, Jeppe, Rukov, J. & Shomron, N., 2012, From Nucleic Acids Sequences to Molecular Medicine. Erdmann, V. A. & Barciszewski, J. (eds.). Springer Publishing Company, p. 503-523 21 p. (RNA Technologies).Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
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Identification of miRNA targets with stable isotope labeling by amino acids in cell culture.
Vinther, Jeppe, Hedegaard, M. M., Gardner, P. P., Andersen, J. S. & Arctander, P., 2006, In: Nucleic Acids Research. 34, 16, p. e107Research output: Contribution to journal › Journal article › Research › peer-review
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The 3' region of human papillomavirus type 16 early nRNAs decrease expression
Vinther, Jeppe, Rosenstierne, M., Kristiansen, K. & Norrild, B., 2005, In: BMC Infect. Dis.. 5, p. 83Research output: Contribution to journal › Journal article › Research › peer-review
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Clearance of cervical human papillomavirus infections
Vinther, Jeppe & Norrild, B., 2003, In: International Journal of Cancer. 104, p. 255-256Research output: Contribution to journal › Journal article › Research › peer-review
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Comment on “DpCoA tagSeq: Barcoding dpCoA-Capped RNA for Direct Nanopore Sequencing via Maleimide-Thiol Reaction”
Vinther, Jeppe, 2024, In: Analytical Chemistry. 96, 1, p. 606-609 4 p.Research output: Contribution to journal › Comment/debate › Research › peer-review
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The 3' region of human papillomavirus type 16 early mRNAs decrease expression
Vinther, Jeppe, Rosenstierne, M. W., Kristiansen, K. & Norrild, B., 2005, In: BMC Infectious Diseases. 5, p. 83Research output: Contribution to journal › Journal article › Research › peer-review
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No Evidence for N7-Methylation of Guanosine (m7G) in Human let-7e
Vinther, Jeppe, 2020, In: Molecular Cell. 79, 2, p. 199-200 2 p.Research output: Contribution to journal › Letter › Research › peer-review
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Use of tiling array data and RNA secondary structure predictions to identify noncoding RNA genes.
Weile, C., Gardner, P. P., Hedegaard, M. M. & Vinther, Jeppe, 2007, In: BMC Genomics. 8, p. 244Research output: Contribution to journal › Journal article › Research › peer-review
ID: 10892
Most downloads
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Body fluid identification of blood, saliva and semen using second generation sequencing of micro-RNA
Research output: Contribution to journal › Journal article › Research › peer-review
Published -
757
downloads
Massive parallel-sequencing-based hydroxyl radical probing of RNA accessibility
Research output: Contribution to journal › Journal article › Research › peer-review
Published -
246
downloads
SHAPE selection (SHAPES) enrich for RNA structure signal in SHAPE sequencing-based probing data
Research output: Contribution to journal › Journal article › Research › peer-review
Published