Søren Johannes Sørensen
Professor
Microbiology
Universitetsparken 15
2100 København Ø
- 2024
- Published
A comparison of short-read, HiFi long-read, and hybrid strategies for genome-resolved metagenomics
Eisenhofer Philipona, Raphael A, Nesme, J., Santos-Bay, Luisa, Koziol, Adam Leslie, Sørensen, Søren Johannes, Alberdi, Antton & Aizpurua Arrieta, Ostaizka, 2024, In: Microbiology Spectrum. 12, 4, 14 p., e03590-23.Research output: Contribution to journal › Journal article › Research › peer-review
- E-pub ahead of print
Antibiotic implant irrigation and deep infection: A retrospective study of 1508 patients undergoing breast reconstruction with implants
Hemmingsen, Mathilde Nejrup, Bennedsen, A. K., Kullab, R. B., Weltz, T. K., Ørholt, M., Norlin, C. B., Kalstrup, J., Bredgaard, R., Sørensen, Søren Johannes, Bjarnsholt, Thomas, Hølmich, Lisbet Rosenkrantz, Damsgaard, T. E., Vester-Glowinski, Peter Viktor & Herly, Mikkel, 2024, (E-pub ahead of print) In: Plastic and Reconstructive Surgery. 26 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Horizontal transmission of a multidrug-resistant IncN plasmid isolated from urban wastewater
Yu, Z., Wang, Q., Pinilla Redondo, Rafael, Madsen, Jonas Stenløkke, Clasen, K. A. D., Ananbeh, H., Olesen, Asmus Kalckar, Gong, Zhuang, Yang, Nan, Dechesne, A., Smets, B., Nesme, Joseph & Sørensen, Søren Johannes, 2024, In: Ecotoxicology and Environmental Safety. 271, 12 p., 115971.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Insights into the circular: The cryptic plasmidome and its derived antibiotic resistome in the urban water systems
Yu, Z., He, Wanli, Klincke, F., Madsen, Jonas Stenløkke, Kot, Witold, Hansen, Lars Hestbjerg, Quintela-Baluja, M., Balboa, S., Dechesne, A., Smets, B., Nesme, Joseph & Sørensen, Søren Johannes, 2024, In: Environment International. 183, 12 p., 108351.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Interspecific interactions facilitate keystone species in a multispecies biofilm that promotes plant growth
Yang, Nan, Røder, Henriette Lyng, Wicaksono, W. A., Wassermann, B., Russel, J., Li, Xuan Ji, Nesme, Joseph, Berg, G., Sørensen, Søren Johannes & Burmølle, Mette, 2024, In: The ISME Journal. 18, 1, 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Long-term conservation tillage with reduced nitrogen fertilization intensity can improve winter wheat health via positive plant–microorganism feedback in the rhizosphere
Behr, J. H., Kuhl-Nagel, T., Sommermann, L., Moradtalab, N., Chowdhury, S. P., Schloter, M., Windisch, S., Schellenberg, I., Maccario, Lorrie, Sørensen, Søren Johannes, Rothballer, M., Geistlinger, J., Smalla, K., Ludewig, U., Neumann, G., Grosch, R. & Babin, D., 2024, In: FEMS Microbiology Ecology. 100, 2, 18 p., fiae003.Research output: Contribution to journal › Journal article › Research › peer-review
- 2023
- Published
Hordeum vulgare differentiates its response to beneficial bacteria
Duan, Y., Han, M., Grimm, M., Schierstaedt, J., Imani, J., Cardinale, M., Le Jean, M., Nesme, Joseph, Sørensen, Søren Johannes & Schikora, A., 2023, In: BMC Plant Biology. 23, 1, 16 p., 460.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
An overview of plasmid transfer in the plant microbiome
Sanchez Salazar, Angela Maria, Taparia, Tanvi, Olesen, Asmus Kalckar, Acuña, J. J., Sørensen, Søren Johannes & Jorquera, M. A., 2023, In: Plasmid. 127, 11 p., 102695.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Associational Resistance to Predation by Protists in a Mixed Species Biofilm
Goh, Y. F., Røder, Henriette Lyng, Chan, S. H., Ismail, M. H., Madsen, Jonas Stenløkke, Lee, K. W. K., Sørensen, Søren Johannes, Givskov, Michael, Burmølle, Mette, Rice, S. A. & McDougald, D., 2023, In: Applied and Environmental Microbiology. 89, 2, 16 p., e0174122.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Bacteriophages suppress CRISPR–Cas immunity using RNA-based anti-CRISPRs
Camara, Sarah, Mayo-Muñoz, D., Russel, J., Fagerlund, R. D., Madsen, Jonas Stenløkke, Fineran, P. C., Sørensen, Søren Johannes & Pinilla Redondo, Rafael, 2023, In: Nature. 623, 7987, p. 601-607 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Centenarians have a diverse gut virome with the potential to modulate metabolism and promote healthy lifespan
Johansen, Joachim, Atarashi, K., Arai, Y., Hirose, N., Sørensen, Søren Johannes, Vatanen, T., Knip, M., Honda, K., Xavier, R. J., Rasmussen, Simon & Plichta, D. R., 2023, In: Nature Microbiology. 8, p. 1064-1078 18 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Cooperative microbial interactions drive spatial segregation in porous environments
Wu, Y., Fu, C., Peacock, C. L., Sørensen, Søren Johannes, Redmile-Gordon, M. A., Xiao, K. Q., Gao, C., Liu, J., Huang, Q., Li, Z., Song, P., Zhu, Y., Zhou, J. & Cai, P., 2023, In: Nature Communications. 14, 1, 14 p., 4226.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Differential responses of the gut microbiome and resistome to antibiotic exposures in infants and adults
Li, Xuan Ji, Brejnrod, A., Thorsen, J., Zachariasen, Trine, Trivedi, Urvish, Russel, J., Vestergaard, G. A., Stokholm, Jakob, Rasmussen, Morten Arendt & Sørensen, Søren Johannes, 2023, In: Nature Communications. 14, 1, 16 p., 8526.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Draft genomes of seven isolates from Danish wastewater facilities belonging to Pseudomonas, Bacillus, Pseudochrobactrum, Brevundimonas, and Pandoraea
Maccario, Lorrie, Silva, A. F., Nesme, Joseph, Amador Hierro, Cristina Isabel, Sørensen, Søren Johannes, Cooper, V. S. & Røder, Henriette Lyng, 2023, In: Microbiology resource announcements. 12, 12, 4 p.Research output: Contribution to journal › Letter › Research › peer-review
- Published
Expanding known viral diversity in the healthy infant gut
Shah, S. A., Deng, L., Thorsen, J., Pedersen, A. G., Dion, M. B., Castro-Mejía, J. L., Silins, R., Romme, F. O., Sausset, R., Jessen, L. E., Ndela, E. O., Hjelmsø, M., Rasmussen, M. A., Redgwell, T. A., Rodríguez, C. L., Vestergaard, G., Zhang, Y., Chawes, B., Bønnelykke, K., Sørensen, S. J. & 6 others, , 2023, In: Nature Microbiology. 8, p. 986–998Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Fungi and bacteria in the beds of rural and urban infants correlate with later risk of atopic diseases
Lehtimäki, J., Gupta, S., Hjelmsø, M., Shah, S., Thorsen, Jonathan Jan Ilve, Rasmussen, Morten Arendt, Soverini, M., Li, Xuan Ji, Russel, J., Trivedi, Urvish, Brix, S., Bønnelykke, Klaus, Chawes, Bo Lund Krogsgaard, Bisgaard, H., Sørensen, Søren Johannes & Stokholm, Jakob, 2023, In: Clinical and Experimental Allergy. 53, 12, p. 1268-1278 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Oropharyngeal Microbiota Clusters in Children with Asthma or Wheeze Associate with Allergy, Blood Transcriptomic Immune Pathways, and Exacerbation Risk
U-BIOPRED Study Group, U. S. G., 2023, In: American Journal of Respiratory and Critical Care Medicine. 208, 2, p. 142-154 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Pharmacokinetics of Locally Applied Antibiotic Prophylaxis for Implant-Based Breast Reconstruction
Hemmingsen, Mathilde Nejrup, Bennedsen, A. K., Kullab, R. B., Norlin, C. B., Ørholt, M., Larsen, A., Bue, M., Lichtenberg, Mads, Hertz, Frederik Boëtius, Damsgaard, T. E., Vester-Glowinski, Peter Viktor, Sørensen, Søren Johannes, Bjarnsholt, Thomas & Herly, Mikkel, 2023, In: JAMA network open. 6, 12, 11 p., E2348414.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Plasmid permissiveness of wastewater microbiomes can be predicted from 16S rRNA sequences by machine learning
Moradigaravand, D., Li, L., Dechesne, A., Nesme, Joseph, de la Cruz, R., Ahmad, H., Banzhaf, M., Sørensen, Søren Johannes, Smets, B. F. & Kreft, J. U., 2023, In: Bioinformatics (Oxford, England). 39, 7, 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The airway microbiota of neonates colonized with asthma-associated pathogenic bacteria
Thorsen, Jonathan Jan Ilve, Li, Xuan Ji, Peng, Shuang, Sunde, R. B., Shah, S. A., Bhattacharyya, M., Poulsen, C. S., Poulsen, Christina Egeø, Leal Rodriguez, C., Widdowson, Michael Lawrence, Neumann, A. U., Trivedi, Urvish, Chawes, Bo Lund Krogsgaard, Bønnelykke, Klaus, Bisgaard, H., Sørensen, Søren Johannes & Stokholm, Jakob, 2023, In: Nature Communications. 14, 12 p., 6668.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The infant gut virome is associated with preschool asthma risk independently of bacteria
Rodríguez, C. L., Shah, S. A., Rasmussen, Morten Arendt, Thorsen, J., Boulund, U., Pedersen, C. T., Castro-Mejía, J. L., Poulsen, Christina Egeø, Poulsen, C. S., Deng, Ling, Larsen, Frej Andreas Nøhr, Widdowson, Michael Lawrence, Zhang, Yichang, Sørensen, Søren Johannes, Moineau, S., Petit, M. A., Chawes, Bo Lund Krogsgaard, Bønnelykke, Klaus, Nielsen, Dennis Sandris & Stokholm, Jakob, 2023, In: Nature Medicine. 30, p. 138-148 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Warmer winters result in reshaping of the European beech forest soil microbiome (bacteria, archaea and fungi) - With potential implications for ecosystem functioning
Dahl, M. B., Kreyling, J., Petters, S., Wang, H., Mortensen, M. S., Maccario, Lorrie, Sørensen, Søren Johannes, Urich, T. & Weigel, R., 2023, In: Environmental Microbiology. 25, 6, 18 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2022
- Published
A novel and affordable bioaugmentation strategy with microbial extracts to accelerate the biodegradation of emerging contaminants in different media
Aguilar-Romero, I., van Dillewijn, P., Nesme, Joseph, Sørensen, Søren Johannes, Nogales, R., Delgado-Moreno, L. & Romero, E., 2022, In: Science of the Total Environment. 834, 10 p., 155234.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Artificial selection of stable rhizosphere microbiota leads to heritable plant phenotype changes
Jacquiod, S., Spor, A., Wei, S., Munkager, V., Bru, D., Sørensen, Søren Johannes, Salon, C., Philippot, L. & Blouin, M., 2022, In: Ecology Letters. 25, 1, p. 189-201 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Asthma and Wheeze Severity and the Oropharyngeal Microbiota in Children and Adolescents
Thorsen, J., Stokholm, J., Rasmussen, M. A., Roggenbuck-Wedemeyer, M., Vissing, N. H., Mortensen, M. S., Brejnrod, A. D., Fleming, L., Bush, A., Roberts, G., Singer, F., Frey, U., Hedlin, G., Nordlund, B., Murray, C. S., Abdel-Aziz, M. I., Hashimoto, S., van Aalderen, W., Maitland-van der Zee, A. H., Shaw, D. & 13 others, , 2022, In: Annals of the American Thoracic Society. 19, 12, p. 2031-2043 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Barley Rhizosphere Microbiome Transplantation: A Strategy to Decrease Susceptibility of Barley Grown in Soils With Low Microbial Diversity to Powdery Mildew
Bziuk, N., Maccario, Lorrie, Sørensen, Søren Johannes, Schikora, A. & Smalla, K., 2022, In: Frontiers in Microbiology. 13, 14 p., 830905.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Biosolids for safe land application: does wastewater treatment plant size matters when considering antibiotics, pollutants, microbiome, mobile genetic elements and associated resistance genes?
Wolters, B., Hauschild, K., Blau, K., Mulder, I., Heyde, B. J., Sørensen, Søren Johannes, Siemens, J., Jechalke, S., Smalla, K. & Nesme, Joseph, 2022, In: Environmental Microbiology. 24, 3, p. 1573-1589 17 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
CRISPR-Cas systems are widespread accessory elements across bacterial and archaeal plasmids
Pinilla Redondo, Rafael, Russel, J., Mayo-Muñoz, D., Shah, S. A., Garrett, Roger Antony, Nesme, Joseph, Madsen, Jonas Stenløkke, Fineran, P. C. & Sørensen, Søren Johannes, 2022, In: Nucleic Acids Research. 50, 8, p. 4315-4328Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Critical Assessment of Metagenome Interpretation: the second round of challenges
Meyer, F., Fritz, A., Deng, Z. L., Koslicki, D., Lesker, T. R., Gurevich, A., Robertson, G., Alser, M., Antipov, D., Beghini, F., Bertrand, D., Brito, J. J., Brown, C. T., Buchmann, J., Buluç, A., Chen, B., Chikhi, R., Clausen, P. T. L. C., Cristian, A., Dabrowski, P. W. & 83 others, , 2022, In: Nature Methods. 19, 4, p. 429-440Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Deciphering bacteria associated with a pre-parasitic stage of the root-knot nematode Meloidogyne hapla in nemato-suppressive and nemato-conducive soils
Topalović, O., Santos, S. S., Heuer, H., Nesme, Joseph, Kanfra, X., Hallmann, J., Sørensen, Søren Johannes & Vestergård, M., 2022, In: Applied Soil Ecology. 172, 9 p., 104344.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genome binning of viral entities from bulk metagenomics data
Johansen, Joachim, Plichta, D. R., Nissen, J. N., Jespersen, Marie Louise, Shah, S. A., Deng, Ling, Stokholm, Jakob, Bisgaard, H., Nielsen, Dennis Sandris, Sørensen, Søren Johannes & Rasmussen, Simon, 2022, In: Nature Communications. 13, 12 p., 965.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Horizontal Gene Transfer of an IncP1 Plasmid to Soil Bacterial Community Introduced by Escherichia coli through Manure Amendment in Soil Microcosms
Macedo, G., Olesen, Asmus Kalckar, Maccario, Lorrie, Leal, L. H., v. d. Maas, P., Heederik, D., Mevius, D., Sørensen, Søren Johannes & Schmitt, H., 2022, In: Environmental Science & Technology. 56, 16, p. 11398-11408 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Impact of intensive lifestyle intervention on gut microbiota composition in type 2 diabetes: a post-hoc analysis of a randomized clinical trial
Wei, S., Brejnrod, A. D., Trivedi, Urvish, Mortensen, M. S., Johansen, M. Y., Karstoft, Kristian, Vaag, A. A., Ried-Larsen, M. & Sørensen, Søren Johannes, 2022, In: Gut Microbes. 14, 1, 15 p., 2005407.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Importance of substrate quality and clay content on microbial extracellular polymeric substances production and aggregate stability in soils
Olagoke, F. K., Bettermann, A., Nguyen, P. T. B., Redmile-Gordon, M., Babin, D., Smalla, K., Nesme, Joseph, Sørensen, Søren Johannes, Kalbitz, K. & Vogel, C., 2022, In: Biology and Fertility of Soils. 58, 4, p. 435-457 23 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
IncHI1A plasmids potentially facilitate horizontal flow of antibiotic resistance genes to pathogens in microbial communities of urban residential sewage
Olesen, Asmus Kalckar, Pinilla Redondo, Rafael, Hansen, Mads Frederik, Russel, J., Dechesne, A., Smets, B. F., Madsen, Jonas Stenløkke, Nesme, Joseph & Sørensen, Søren Johannes, 2022, In: Molecular Ecology. 31, 5, p. 1595-1608Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Influence of sewage sludge stabilization method on microbial community and the abundance of antibiotic resistance genes
Major, N., Jechalke, S., Nesme, Joseph, Goreta Ban, S., Černe, M., Sørensen, Søren Johannes, Ban, D., Grosch, R., Schikora, A. & Schierstaedt, J., 2022, In: Waste Management. 154, p. 126-135 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Long-Range PCR Reveals the Genetic Cargo of IncP-1 Plasmids in the Complex Microbial Community of an On-Farm Biopurification System Treating Pesticide-Contaminated Wastewater
Dunon, V., Holmsgaard, P. N., Dealtry, S., Lavigne, R., Sørensen, Søren Johannes, Smalla, K., Top, E. M. & Springael, D., 2022, In: Applied and Environmental Microbiology. 88, 3, 17 p., e01648-21.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Long-Term Fertilization Strategy Impacts Rhizoctonia solani–Microbe Interactions in Soil and Rhizosphere and Defense Responses in Lettuce
Sommermann, L., Babin, D., Behr, J. H., Chowdhury, S. P., Sandmann, M., Windisch, S., Neumann, G., Nesme, Joseph, Sørensen, Søren Johannes, Schellenberg, I., Rothballer, M., Geistlinger, J., Smalla, K. & Grosch, R., 2022, In: Microorganisms. 10, 9, 27 p., 1717.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Metabolic Profiling of Interspecies Interactions During Sessile Bacterial Cultivation Reveals Growth and Sporulation Induction in Paenibacillus amylolyticus in Response to Xanthomonas retroflexus
Herschend, J., Ernst, M., Koren, K., Melnik, A. V., da Silva, R. R., Røder, Henriette Lyng, Damholt, Z. B. V., Hägglund, Per Mårten, Svensson, B., Sørensen, Søren Johannes, Kühl, Michael, Dorrestein, P. C. & Burmølle, Mette, 2022, In: Frontiers in Cellular and Infection Microbiology. 12, 17 p., 805473.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Metagenomic evidence for co-occurrence of antibiotic, biocide and metal resistance genes in pigs
Li, Xuan Ji, Rensing, C., Vestergaard, G., Arumugam, Mani, Nesme, Joseph, Gupta, S., Brejnrod, A. D. & Sørensen, Søren Johannes, 2022, In: Environment International. 158, 10 p., 106899.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Neonatal metabolome of caesarean section and risk of childhood asthma
Gürdeniz, G., Ernst, M., Rago, D., Kim, M., Courraud, J., Stokholm, Jakob, Bønnelykke, Klaus, Björkbom, A., Trivedi, Urvish, Sørensen, Søren Johannes, Brix, Susanne, Hougaard, D., Rasmussen, Morten Arendt, Cohen, A. S., Bisgaard, H. & Chawes, Bo Lund Krogsgaard, 2022, In: The European Respiratory Journal. 59, 6, 11 p., 2102406.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Prophylactic treatment of breast implants with a solution of gentamicin, vancomycin and cefazolin antibiotics for women undergoing breast reconstructive surgery: protocol for a randomised, double-blind, placebo-controlled trial (The BREAST-AB trial)
Hemmingsen, M. N., Larsen, A., Weltz, T. K., Ørholt, M., Wiberg, S., Bennedsen, A. K., Bille, C., Carstensen, L. F., Jensen, L. T., Bredgaard, R., Koudahl, V., Schmidt, Volker-Jürgen, Vester-Glowinski, Peter Viktor, Hølmich, Lisbet Rosenkrantz, Sørensen, Søren Johannes, Bjarnsholt, Thomas, Damsgaard, Tine M Engberg & Herly, Mikkel, 2022, In: BMJ Open. 12, 9, p. e058697Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Soil texture is a stronger driver of the maize rhizosphere microbiome and extracellular enzyme activities than soil depth or the presence of root hairs
Yim, B., Ibrahim, Z., Rüger, L., Ganther, M., Maccario, Lorrie, Sørensen, Søren Johannes, Heintz-Buschart, A., Tarkka, M. T., Vetterlein, D., Bonkowski, M., Blagodatskaya, E. & Smalla, K., 2022, In: Plant and Soil. 478, 1-2, p. 229-251 23 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The developing airway and gut microbiota in early life is influenced by age of older siblings
Christensen, E. D., Hjelmsø, M. H., Thorsen, Jonathan Jan Ilve, Shah, S., Redgwell, T., Poulsen, Christina Egeø, Trivedi, Urvish, Russel, J., Gupta, S., Chawes, Bo Lund Krogsgaard, Bønnelykke, Klaus, Sørensen, Søren Johannes, Rasmussen, Morten Arendt, Bisgaard, H. & Stokholm, Jakob, 2022, In: Microbiome. 10, 15 p., 106.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Unexpected diversity among small-scale sample replicates of defined plant root compartments
Attia, S., Russel, J., Mortensen, M. S., Madsen, Jonas Stenløkke & Sørensen, Søren Johannes, 2022, In: ISME Journal. 16, 4, p. 997-1003 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Vaginal dysbiosis in pregnancy associates with risk of emergency caesarean section: a prospective cohort study
Haahr, T., Clausen, Tine Dalsgaard, Thorsen, J., Rasmussen, Morten Arendt, Mortensen, M. S., Lehtimäki, J., Shah, S. A., Hjelmsø, M. H., Bønnelykke, Klaus, Chawes, Bo Lund Krogsgaard, Vestergaard, G., Jacobsson, B., Larsson, P., Brix, S., Sørensen, Søren Johannes, Bisgaard, H. & Stokholm, Jakob, 2022, In: Clinical Microbiology and Infection. 28, 4, p. Pages 588-595Research output: Contribution to journal › Journal article › Research › peer-review
- 2021
- Published
A community resource for paired genomic and metabolomic data mining
Schorn, M. A., Verhoeven, S., Ridder, L., Huber, F., Acharya, D. D., Aksenov, A. A., Aleti, G., Moghaddam, J. A., Aron, A. T., Aziz, S., Bauermeister, A., Bauman, K. D., Baunach, M., Beemelmanns, C., Beman, J. M., Berlanga-Clavero, M. V., Blacutt, A. A., Bode, H. B., Boullie, A., Brejnrod, A. & 90 others, , 2021, In: Nature Chemical Biology. 17, 4, p. 363-368Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Broad Dissemination of Plasmids across Groundwater-Fed Rapid Sand Filter Microbiomes
Pinilla Redondo, Rafael, Olesen, Asmus Kalckar, Russel, J., de Vries, L. E., Christensen, L. D., Musovic, S., Nesme, Joseph & Sørensen, Søren Johannes, 2021, In: mBio. 12, 6, 13 p., e0306821.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Comparative Genomics Analysis of Keratin-Degrading Chryseobacterium Species Reveals Their Keratinolytic Potential for Secondary Metabolite Production
Kang, D., Shoaie, S., Jacquiod, S., Sørensen, Søren Johannes & Ledesma-Amaro, R., 2021, In: Microorganisms. 9, 5, 15 p., 1042.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Comparative analysis of the alveolar microbiome in COPD, ECOPD, Sarcoidosis, and ILD patients to identify respiratory illnesses specific microbial signatures
Gupta, S., Shariff, M., Chaturvedi, G., Sharma, A., Goel, N., Yadav, M., Mortensen, M. S., Sørensen, Søren Johannes, Mukerji, M. & Chauhan, N. S., 2021, In: Scientific Reports. 11, 11 p., 3963.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Distinct rhizomicrobiota assemblages and plant performance in lettuce grown in soils with different agricultural management histories
Babin, D., Sommermann, L., Chowdhury, S. P., Behr, J. H., Sandmann, M., Neumann, G., Nesme, Joseph, Sørensen, Søren Johannes, Schellenberg, I., Rothballer, M., Geistlinger, J., Smalla, K. & Grosch, R., 2021, In: FEMS Microbiology Ecology. 97, 4, 21 p., fiab027.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
EMBRACE-WATERS statement: Recommendations for reporting of studies on antimicrobial resistance in wastewater and related aquatic environments
Hassoun-Kheir, N., Stabholz, Y., Kreft, J-U., de la Cruz, R., Dechesne, A., Smets, B. F., Romalde, J. L., Lema, A., Balboa, S., García-Riestra, C., Torres-Sangiao, E., Neuberger, A., Graham, D., Quintela-Baluja, M., Stekel, D. J., Graham, J., Pruden, A., Nesme, J., Sørensen, S. J., Hough, R. & 1 others, , 2021, In: One Health. 13, 9 p., 100339.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Emergent bacterial community properties induce enhanced drought tolerance in Arabidopsis
Yang, Nan, Nesme, Joseph, Røder, Henriette Lyng, Li, Xuan Ji, Zuo, Zhangli Thomsen, Petersen, Morten, Burmølle, Mette & Sørensen, Søren Johannes, 2021, In: npj Biofilms and Microbiomes. 7, 11 p., 82.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Extended-Spectrum β-Lactamase and Carbapenemase Genes are Substantially and Sequentially Reduced during Conveyance and Treatment of Urban Sewage
Li, L., Nesme, Joseph, Quintela-Baluja, M., Balboa, S., Hashsham, S., Williams, M. R., Yu, Z., Sørensen, Søren Johannes, Graham, D. W., Romalde, J. L., Dechesne, A. & Smets, B. F., 2021, In: Environmental Science & Technology. 55, 9, p. 5939-5949 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Identification of Beneficial Microbial Consortia and Bioactive Compounds with Potential as Plant Biostimulants for a Sustainable Agriculture
Tabacchioni, S., Passato, S., Ambrosino, P., Huang, L., Caldara, M., Cantale, C., Hett, J., Del Fiore, A., Fiore, A., Schlüter, A., Sczyrba, A., Maestri, E., Marmiroli, N., Neuhoff, D., Nesme, J., Sørensen, S. J., Aprea, G., Nobili, C., Presenti, O., Giovannetti, G. & 4 others, , 2021, In: Microorganisms. 9, 2, 23 p., 426.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Impact of Long-Term Organic and Mineral Fertilization on Rhizosphere Metabolites, Root–Microbial Interactions and Plant Health of Lettuce
Windisch, S., Sommermann, L., Babin, D., Chowdhury, S. P., Grosch, R., Moradtalab, N., Walker, F., Höglinger, B., El-Hasan, A., Armbruster, W., Nesme, Joseph, Sørensen, Søren Johannes, Schellenberg, I., Geistlinger, J., Smalla, K., Rothballer, M., Ludewig, U. & Neumann, G., 2021, In: Frontiers in Microbiology. 11, 26 p., 597745.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Impact of Tellurite on the Metabolism of Paenibacillus pabuli AL109b With Flagellin Production Explaining High Reduction Capacity
Farias, P., Francisco, R., Maccario, Lorrie, Herschend, J., Piedade, A. P., Sørensen, Søren Johannes & Morais, P. V., 2021, In: Frontiers in Microbiology. 12, 15 p., 718963.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Importance of microbial communities at the root-soil interface for extracellular polymeric substances and soil aggregation in semiarid grasslands
Bettermann, A., Zethof, J. H. T., Babin, D., Cammeraat, E. L. H., Solé-Benet, A., Lázaro, R., Luna, L., Nesme, Joseph, Sørensen, Søren Johannes, Kalbitz, K., Smalla, K. & Vogel, C., 2021, In: Soil Biology & Biochemistry. 159, 14 p., 108301.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Kin discrimination promotes horizontal gene transfer between unrelated strains in Bacillus subtilis
Stefanic, P., Belcijan, K., Kraigher, B., Kostanjšek, R., Nesme, Joseph, Madsen, Jonas Stenløkke, Kovac, J., Sørensen, Søren Johannes, Vos, M. & Mandic-Mulec, I., 2021, In: Nature Communications. 12, 11 p., 3457.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Large-scale association analyses identify host factors influencing human gut microbiome composition
Kurilshikov, A., Medina-Gomez, C., Bacigalupe, R., Radjabzadeh, D., Wang, J., Demirkan, A., Le Roy, C. I., Raygoza Garay, J. A., Finnicum, C. T., Liu, X., Zhernakova, D. V., Bonder, M. J., Hansen, T. H., Frost, F., Rühlemann, M. C., Turpin, W., Moon, J. Y., Kim, H. N., Lüll, K., Barkan, E. & 84 others, , 2021, In: Nature Genetics. 53, p. 156-165 19 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Lead Drives Complex Dynamics of a Conjugative Plasmid in a Bacterial Community
Cyriaque, V., Madsen, Jonas Stenløkke, Fievez, L., Leroy, B., Hansen, Lars Hestbjerg, Bureau, F., Sørensen, Søren Johannes & Wattiez, R., 2021, In: Frontiers in Microbiology. 12, 14 p., 655903.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Metagenomic analysis of a keratin-degrading bacterial consortium provides insight into the keratinolytic mechanisms
Kang, D., Huang, Y., Nesme, Joseph, Herschend, J., Jacquiod, S., Kot, Witold, Hansen, Lars Hestbjerg, Lange, L. & Sørensen, Søren Johannes, 2021, In: Science of the Total Environment. 761, 9 p., 143281.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Microbial community analysis of soils under different soybean cropping regimes in the Argentinean south-eastern Humid Pampas
Fernandez-Gnecco, G., Smalla, K., Maccario, Lorrie, Sørensen, Søren Johannes, Barbieri, P., Consolo, V. F., Covacevich, F. & Babin, D., 2021, In: FEMS Microbiology Ecology. 97, 3, 14 p., fiab007.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Modeling transfer of vaginal microbiota from mother to infant in early life
Mortensen, M. S., Rasmussen, Morten Arendt, Stokholm, Jakob, Brejnrod, A. D., Balle, C., Thorsen, J., Krogfelt, K. A., Bisgaard, H. & Sørensen, Søren Johannes, 2021, In: eLife. 10, 19 p., e57051.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Reduced tillage, cover crops and organic amendments affect soil microbiota and improve soil health in Uruguayan vegetable farming systems
Cerecetto, V., Smalla, K., Nesme, Joseph, Garaycochea, S., Fresia, P., Sørensen, Søren Johannes, Babin, D. & Leoni, C., 2021, In: FEMS Microbiology Ecology. 97, 3, 14 p., fiab023.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Root exposure to apple replant disease soil triggers local defense response and rhizoplane microbiome dysbiosis
Balbín-Suárez, A., Jacquiod, S., Rohr, A. D., Liu, B., Flachowsky, H., Winkelmann, T., Beerhues, L., Nesme, Joseph, Sørensen, Søren Johannes, Vetterlein, D. & Smalla, K., 2021, In: FEMS Microbiology Ecology. 97, 4, 14 p., fiab031.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Spatial analysis of the root system coupled to microbial community inoculation shed light on rhizosphere bacterial community assembly
Wei, S., Jacquiod, S., Philippot, L., Blouin, M. & Sørensen, Søren Johannes, 2021, In: Biology and Fertility of Soils. 57, 7, p. 973-989 17 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Temporal oral microbiome changes with brushing in children with cleft lip and palate
Rodrigues, R., Chung, A. P., Mortensen, M. S., Fernandes, M. H., Monteiro, A. B., Furfuro, R., Silva, C. C., Manso, M. C., Sørensen, Søren Johannes & Morais, P. V., 2021, In: Heliyon. 7, 9 p., e06513.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The Airway Microbiota Modulates Effect of Azithromycin Treatment for Episodes of Recurrent Asthma-like Symptoms in Preschool Children: A Randomized Clinical Trial
Thorsen, Jonathan Jan Ilve, Stokholm, Jakob, Rasmussen, Morten Arendt, Mortensen, M. S., Brejnrod, A. D., Hjelmsø, M., Shah, S., Chawes, Bo Lund Krogsgaard, Bønnelykke, Klaus, Sørensen, Søren Johannes & Bisgaard, H., 2021, In: American Journal of Respiratory and Critical Care Medicine. 204, 2, p. 149-158Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The effect of early probiotic exposure on the preterm infant gut microbiome development
Hui, Y., Smith, Birgitte, Mortensen, M. S., Krych, Lukasz, Sørensen, Søren Johannes, Greisen, Gorm, Krogfelt, K. A. & Nielsen, Dennis Sandris, 2021, In: Gut Microbes. 13, 1, 15 p., 1951113.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The infant gut resistome associates with E. coli, environmental exposures, gut microbiome maturity, and asthma-associated bacterial composition
Li, Xuan Ji, Stokholm, Jakob, Brejnrod, A., Vestergaard, G. A., Russel, J., Trivedi, Urvish, Thorsen, Jonathan Jan Ilve, Gupta, S., Hjelmsø, M. H., Shah, S. A., Rasmussen, Morten Arendt, Bisgaard, H. & Sørensen, Søren Johannes, 2021, In: Cell Host & Microbe. 29, 6, p. 975–987.e4 17 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The initial inoculation ratio regulates bacterial coculture interactions and metabolic capacity
Gao, C., Cao, H., Cai, P. & Sørensen, Søren Johannes, 2021, In: ISME Journal. 15, p. 29-40 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The treasure inside barley seeds: microbial diversity and plant beneficial bacteria
Bziuk, N., Maccario, Lorrie, Straube, B., Wehner, G., Sørensen, Søren Johannes, Schikora, A. & Smalla, K., 2021, In: Environmental Microbiomes. 16, 21 p., 20.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Tillage shapes the soil and rhizosphere microbiome of barley - but not its susceptibility towards Blumeria graminis f. sp. hordei
Bziuk, N., Maccario, Lorrie, Douchkov, D., Lueck, S., Babin, D., Sørensen, Søren Johannes, Schikora, A. & Smalla, K., 2021, In: FEMS Microbiology Ecology. 97, 3, 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Urbanized microbiota in infants, immune constitution and later risk of atopic diseases
Lehtimäki, J., Thorsen, Jonathan Jan Ilve, Rasmussen, Morten Arendt, Hjelmsø, M., Shah, S., Mortensen, M. S., Trivedi, Urvish, Vestergaard, G., Bønnelykke, Klaus, Chawes, Bo Lund Krogsgaard, Brix, S., Sørensen, Søren Johannes, Bisgaard, H. & Stokholm, Jakob, 2021, In: Journal of Allergy and Clinical Immunology. 148, 1, p. 234-243 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2020
- Published
Salmonella persistence in soil depends on reciprocal interactions with indigenous microorganisms
Schierstaedt, J., Jechalke, S., Nesme, Joseph, Neuhaus, K., Sørensen, Søren Johannes, Grosch, R., Smalla, K. & Schikora, A., 2020, In: Environmental Microbiology. 22, 7, p. 2639-2652 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A converging subset of soil bacterial taxa is permissive to the IncP-1 plasmid pKJK5 across a range of soil copper contamination
Song, J., Klümper, U., Riber, Leise, Dechesne, A., Smets, B. F., Sørensen, Søren Johannes & Brandt, Kristian Koefoed, 2020, In: FEMS Microbiology Ecology. 96, 11, 10 p., fiaa200.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Azo dying of α-keratin material improves microbial keratinase screening and standardization
Gonzalo, M., Espersen, R., Al-Soud, W. A., Cristiano Falco, F., Hägglund, Per Mårten, Sørensen, Søren Johannes, Svensson, B. & Jacquiod, S., 2020, In: Microbial Biotechnology. 13, 4, p. 984-996Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Biocontrol of Bacterial Wilt Disease Through Complex Interaction Between Tomato Plant, Antagonists, the Indigenous Rhizosphere Microbiota, and Ralstonia solanacearum
Elsayed, T. R., Jacquiod, S., Nour, E. H., Sørensen, Søren Johannes & Smalla, K., 2020, In: Frontiers in Microbiology. 10, 15 p., 2835.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
CRISPRCasTyper: Automated Identification, Annotation, and Classification of CRISPR-Cas Loci
Russel, J., Pinilla Redondo, Rafael, Mayo-Muñoz, D., Shah, S. A. & Sørensen, Søren Johannes, 2020, In: CRISPR Journal. 3, 6, p. 462-469 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Community-intrinsic properties enhance keratin degradation from bacterial consortia
Nasipuri, P., Herschend, J., Brejnrod, A. D., Madsen, Jonas Stenløkke, Espersen, R., Svensson, B., Burmølle, Mette, Jacquiod, S. & Sørensen, Søren Johannes, 2020, In: PLoS ONE. 15, 1, 26 p., e0228108.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Comparison of antibiotic-resistant bacteria and antibiotic resistance genes abundance in hospital and community wastewater: A systematic review
Hassoun-Kheir, N., Stabholz, Y., Kreft, J., de la Cruz, R., Romalde, J. L., Nesme, Joseph, Sørensen, Søren Johannes, Smets, B. F., Graham, D. & Paul, M., 2020, In: Science of the Total Environment. 743, 11 p., 140804.Research output: Contribution to journal › Review › Research › peer-review
- Published
Compatibility of X-ray computed tomography with plant gene expression, rhizosphere bacterial communities and enzyme activities
Ganther, M., Yim, B., Ibrahim, Z., Bienert, M. D., Lippold, E., Maccario, Lorrie, Sørensen, Søren Johannes, Bienert, G. P., Vetterlein, D., Heintz-Buschart, A., Blagodatskaya, E., Smalla, K. & Tarkka, M. T., 2020, In: Journal of Experimental Botany. 71, 18, p. 5603-5614 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Composted sewage sludge influences the microbiome and persistence of human pathogens in soil
Major, N., Schierstaedt, J., Jechalke, S., Nesme, Joseph, Ban, S. G., Černe, M., Sørensen, Søren Johannes, Ban, D. & Schikora, A., 2020, In: Microorganisms. 8, 7, 14 p., 1020.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Construction of Simplified Microbial Consortia to Degrade Recalcitrant Materials Based on Enrichment and Dilution-to-Extinction Cultures
Kang, D., Jacquiod, S., Herschend, J., Wei, S., Nesme, Joseph & Sørensen, Søren Johannes, 2020, In: Frontiers in Microbiology. 10, 10 p., 3010.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Delivery mode and gut microbial changes correlate with an increased risk of childhood asthma
Stokholm, Jakob, Thorsen, Jonathan Jan Ilve, Blaser, M. J., Rasmussen, Morten Arendt, Hjelmsø, M., Shah, S., Christensen, E. D., Chawes, Bo Lund Krogsgaard, Bønnelykke, Klaus, Brix, S., Mortensen, M. S., Brejnrod, A., Vestergaard, G., Trivedi, Urvish, Sørensen, Søren Johannes & Bisgaard, H., 2020, In: Science Translational Medicine. 12, 569, 14 p., eaax9929.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Discovery of multiple anti-CRISPRs highlights anti-defense gene clustering in mobile genetic elements
Pinilla Redondo, Rafael, Shehreen, S., Marino, N. D., Fagerlund, R. D., Brown, C. M., Sørensen, Søren Johannes, Fineran, P. C. & Bondy-Denomy, J., 2020, In: Nature Communications. 11, 11 p., 5652.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Ecological succession in the vaginal microbiota during pregnancy and birth
Rasmussen, Morten Arendt, Thorsen, Jonathan Jan Ilve, Dominguez-Bello, M. G., Blaser, M. J., Mortensen, M. S., Brejnrod, A. D., Shah, S. A., Hjelmsø, M. H., Lehtimäki, J., Trivedi, Urvish, Bisgaard, H., Sørensen, Søren Johannes & Stokholm, Jakob, 2020, In: The ISME Journal. 14, 9, p. 2325-2335 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Environmental shaping of the bacterial and fungal community in infant bed dust and correlations with the airway microbiota
Gupta, S., Hjelmsø, M. H., Lehtimäki, J., Li, Xuan Ji, Mortensen, M. S., Russel, J., Trivedi, Urvish, Rasmussen, Morten Arendt, Stokholm, Jakob, Bisgaard, H. & Sørensen, Søren Johannes, 2020, In: Microbiome. 8, 16 p., 115.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Epigenetic landscape links upper airway microbiota in infancy with allergic rhinitis at 6 years of age
Morin, A., McKennan, C. G., Pedersen, C. T., Stokholm, Jakob, Chawes, Bo Lund Krogsgaard, Schoos, A. M., Naughton, K. A., Thorsen, Jonathan Jan Ilve, Mortensen, M. S., Vercelli, D., Trivedi, Urvish, Sørensen, Søren Johannes, Bisgaard, H., Nicolae, D. L., Bønnelykke, Klaus & Ober, C., 2020, In: Journal of Allergy and Clinical Immunology. 146, 6, p. 1358-1366Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Exploring microbial determinants of apple replant disease (ARD): a microhabitat approach under split-root design
Balbín-Suárez, A., Lucas, M., Vetterlein, D., Sørensen, Søren Johannes, Winkelmann, T., Smalla, K. & Jacquiod, S., 2020, In: FEMS Microbiology Ecology. 96, 12, 12 p., fiaa211.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Interspecific interactions in dual-species biofilms of soil bacteria: effects of fertilization practices
Sun, X., Cai, P., Sørensen, Søren Johannes, Mortimer, M., Gao, C., Huang, Q., Wang, Y., Lin, X., Wu, Y., Zhu, D. & Chen, R., 2020, In: Journal of Soils and Sediments. 20, 3, p. 1494-1501 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Metal-induced bacterial interactions promote diversity in river-sediment microbiomes
Cyriaque, V., Géron, A., Billon, G., Nesme, Joseph, Werner, J., Gillan, D. C., Sørensen, Søren Johannes & Wattiez, R., 2020, In: F E M S Microbiology Ecology. 96, 6, 12 p., fiaa076.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Persistence and progression of staphylococcal infection in the presence of public goods
Trivedi, Urvish, Fell, C., Madsen, Jonas Stenløkke, Everett, J., Burmølle, Mette, Rumbaugh, K. P. & Sørensen, Søren Johannes, 2020, In: npj Biofilms and Microbiomes. 6, 5 p., 55.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Plasmids persist in a microbial community by providing fitness benefit to multiple phylotypes
Li, L., Dechesne, A., Madsen, Jonas Stenløkke, Nesme, Joseph, Sørensen, Søren Johannes & Smets, B. F., 2020, In: I S M E Journal. 14, 5, p. 1170-1181 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Prenatal dietary supplements influence the infant airway microbiota in a randomized factorial clinical trial
Hjelmsø, M. H., Shah, S. A., Thorsen, Jonathan Jan Ilve, Rasmussen, Morten Arendt, Vestergaard, G., Mortensen, M. S., Brejnrod, A., Brix, S., Chawes, Bo Lund Krogsgaard, Bønnelykke, Klaus, Sørensen, Søren Johannes, Stokholm, Jakob & Bisgaard, H., 2020, In: Nature Communications. 11, 10 p., 426.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Prokaryotic Community Composition and Extracellular Polymeric Substances Affect Soil Microaggregation in Carbonate Containing Semiarid Grasslands
Zethof, J. H. T., Bettermann, A., Vogel, C., Babin, D., Cammeraat, E. L. H., Solé-Benet, A., Lázaro, R., Luna, L., Nesme, Joseph, Woche, S. K., Sørensen, Søren Johannes, Smalla, K. & Kalbitz, K., 2020, In: Frontiers in Environmental Science. 8, 19 p., 51.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Rhizosphere microbial communities associated to rose replant disease: links to plant growth and root metabolites
Yim, B., Baumann, A., Grunewaldt-Stöcker, G., Liu, B., Beerhues, L., Zühlke, S., Sapp, M., Nesme, Joseph, Sørensen, Søren Johannes, Smalla, K. & Winkelmann, T., 2020, In: Horticulture Research. 7, 16 p., 144.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Rose replant disease: detailed analyses of plant reactions, root endophytes and rhizosphere microbial communities
Baumann, A., Yim, B., Grunewaldt-Stöcker, G., Liu, B., Beerhues, L., Sapp, M., Nesme, Joseph, Sørensen, Søren Johannes, Smalla, K. & Winkelmann, T., 2020, In: Acta Horticulturae. 1283, p. 97-104 8 p.Research output: Contribution to journal › Conference article › Research › peer-review
- Published
Selection and propagation of IncP conjugative plasmids following long-term anthropogenic metal pollution in river sediments
Cyriaque, V., Jacquiod, S. J. A., Riber, Leise, Abu Al-Soud, W., Gillan, D. C., Sørensen, Søren Johannes & Wattiez, R., 2020, In: Journal of Hazardous Materials. 382, 10 p., 121173.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The microbiome of captive hamadryas baboons
Li, Xuan Ji, Trivedi, Urvish, Brejnrod, A. D., Vestergaard, G. A., Mortensen, M. S., Bertelsen, Mads Frost & Sørensen, Søren Johannes, 2020, In: BMC Animal Microbiome. 2, 10 p., 25.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Type IV CRISPR-Cas systems are highly diverse and involved in competition between plasmids
Pinilla Redondo, Rafael, Mayo-Muñoz, D., Russel, J., Garrett, Roger Antony, Randau, L., Sørensen, Søren Johannes & Shah, S. A., 2020, In: Nucleic Acids Research. 48, 4, p. 2000-2012 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Unravelling plasmidome distribution and interaction with its hosting microbiome
Kav, A. B., Rozov, R., Bogumil, D., Sørensen, Søren Johannes, Hansen, Lars Hestbjerg, Benhar, I., Halperin, E., Shamir, R. & Mizrahi, I., 2020, In: Environmental Microbiology. 22, 1, p. 32-44Research output: Contribution to journal › Journal article › Research › peer-review
- 2019
- Published
Amplicon sequencing provides more accurate microbiome information in healthy children compared to culturing
Gupta, S., Mortensen, M. S., Schjørring, S., Trivedi, Urvish, Vestergaard, G., Stokholm, Jakob, Bisgaard, H., Krogfelt, K. A. & Sørensen, Søren Johannes, 2019, In: Communications Biology. 2, p. 1-7 7 p., 291.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Bacterial community analysis for investigating bacterial transfer from tonsils to the pig carcass
Jakobsen, A. M., Bahl, M. I., Buschhardt, T., Hansen, T. B., Abu Al-Soud, W., Brejnrod, A. D., Sørensen, Søren Johannes, Nesbakken, T. & Aabo, S., 2019, In: International Journal of Food Microbiology. 295, p. 8-18 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
DNA-and RNA-SIP Reveal Nitrospira spp. as Key Drivers of Nitrification in Groundwater-Fed Biofilters
Gülay, A., Fowler, S. J., Tatari, K., Thamdrup, B., Albrechtsen, H., Abu Al-Soud, W., Sørensen, Søren Johannes & Smets, B. F., 2019, In: mBio. 10, 6, 14 p., e01870-19.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Deciphering links between bacterial interactions and spatial organization in multispecies biofilms
Liu, W., Jacquiod, S., Brejnrod, A., Russel, J., Burmølle, Mette & Sørensen, Søren Johannes, 2019, In: ISME Journal. 13, 12, p. 3054-3066 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Different Degrees of Niche Differentiation for Bacteria, Fungi, and Myxomycetes Within an Elevational Transect in the German Alps
Dahl, M. B., Brejnrod, A. D., Russel, J., Sørensen, Søren Johannes & Schnittler, M., 2019, In: Microbial Ecology. 78, 3, p. 764-780Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Effect of long-term organic and mineral fertilization strategies on rhizosphere microbiota assemblage and performance of lettuce
Paul Chowdhury, S., Babin, D., Sandmann, M., Jacquiod, S., Sommermann, L., Sørensen, Søren Johannes, Fliessbach, A., Mäder, P., Geistlinger, J., Smalla, K., Rothballer, M. & Grosch, R., 2019, In: Environmental Microbiology. 21, 7, p. 2426-2439Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Fate of CMY-2-Encoding Plasmids Introduced into the Human Fecal Microbiota by Exogenous Escherichia coli
Anjum, M., Madsen, Jonas Stenløkke, Nesme, Joseph, Jana, B., Wiese, M., Jasinskyte, D., Nielsen, Dennis Sandris, Sørensen, Søren Johannes, Dalsgaard, Anders, Moodley, Arshnee, Bortolaia, V. & Guardabassi, Luca, 2019, In: Antimicrobial Agents and Chemotherapy. 63, 5, 13 p., e02528-18.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Heavy metal exposure causes changes in the metabolic health-associated gut microbiome and metabolites
Li, Xuan Ji, Brejnrod, A. D., Ernst, M., Rykær, M., Herschend, J., Olsen, N. M. C., Dorrestein, P. C., Rensing, C. & Sørensen, Søren Johannes, 2019, In: Environment International. 126, p. 454-467 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Impact of long-term agricultural management practices on soil prokaryotic communities
Babin, D., Deubel, A., Jacquiod, S. J. A., Sørensen, Søren Johannes, Geistlinger, J., Grosch, R. & Smalla, K., 2019, In: Soil Biology & Biochemistry. 129, p. 17-28Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Improvement of pesticide removal in contaminated media using aqueous extracts from contaminated biopurification systems
Romero, I. A., van Dillewijn, P., Nesme, Joseph, Sørensen, Søren Johannes & Romero, E., 2019, In: Science of the Total Environment. 691, p. 749-759 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Infant airway microbiota and topical immune perturbations in the origins of childhood asthma
Thorsen, Jonathan Jan Ilve, Rasmussen, Morten Arendt, Waage, J., Mortensen, M., Brejnrod, A., Bønnelykke, Klaus, Chawes, Bo Lund Krogsgaard, Brix, S., Sørensen, Søren Johannes, Stokholm, Jakob & Bisgaard, H., 2019, In: Nature Communications. 10, 8 p., 5001.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Interspecies interactions reduce selection for a biofilm-optimized variant in a four-species biofilm model
Røder, Henriette Lyng, Liu, W., Sørensen, Søren Johannes, Madsen, Jonas Stenløkke & Burmølle, Mette, 2019, In: Environmental Microbiology Reports. 11, 6, p. 835-839 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Intra- and inter-field diversity of 2,4-dichlorophenoxyacetic acid-degradative plasmids and their tfd catabolic genes in rice fields of the Mekong delta in Vietnam
Nguyen, T. P. O., Hansen, M. A., Hansen, Lars Hestbjerg, Horemans, B., Sørensen, Søren Johannes, De Mot, R. & Springael, D., 2019, In: FEMS Microbiology Ecology. 95, 1, p. 1-11 fiy214.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Manure and Doxycycline Affect the Bacterial Community and Its Resistome in Lettuce Rhizosphere and Bulk Soil
Blau, K., Jacquiod, S., Sørensen, Søren Johannes, Su, J., Zhu, Y., Smalla, K. & Jechalke, S., 2019, In: Frontiers in Microbiology. 10, p. 1-15 725.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Priority of Early Colonizers but No Effect on Cohabitants in a Synergistic Biofilm Community
Olsen, N. M. C., Røder, Henriette Lyng, Russel, J., Madsen, Jonas Stenløkke, Sørensen, Søren Johannes & Burmølle, Mette, 2019, In: Frontiers in Microbiology. 10, 8 p., 1949.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Quantitative Flow Cytometry to Understand Population Heterogeneity in Response to Changes in Substrate Availability in Escherichia coli and Saccharomyces cerevisiae Chemostats
Heins, A., Johanson, T., Han, S., Lundin, L., Carlquist, M., Gernaey, K. V., Sørensen, Søren Johannes & Lantz, A. E., 2019, In: Frontiers in Bioengineering and Biotechnology. 7, 15 p., 187.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Soil amendment with sewage sludge affects soil prokaryotic community composition, mobilome and resistome
Wolters, B., Fornefeld, E., Jechalke, S., Su, J., Zhu, Y., Sørensen, Søren Johannes, Smalla, K. & Jacquiod, S., 2019, In: F E M S Microbiology Reviews. 95, 1, p. 1-14 fiy193.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Tailings microbial community profile and prediction of its functionality in basins of tungsten mine
Chung, A. P., Coimbra, C., Farias, P., Francisco, R., Branco, R., Simão, F. V., Gomes, E., Pereira, A., Vila, M. C., Fiúza, A., Mortensen, M. S., Sørensen, Søren Johannes & Morais, P. V., 2019, In: Scientific Reports. 9, 13 p., 19596.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The effect of acetate on population heterogeneity in different cellular characteristics of Escherichia coli in aerobic batch cultures
Heins, A., Lundin, L., Nunes, I., Gernaey, K. V., Sørensen, Søren Johannes & Eliasson Lantz, A., 2019, In: Biotechnology Progress. 35, 3, e2796.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The needle mycobiome of Picea glauca – A dynamic system reflecting surrounding environment and tree phenological traits
Würth, D. G., Dahl, M. B., Trouillier, M., Wilmking, M., Unterseher, M., Scholler, M., Sørensen, Søren Johannes, Mortensen, M. & Schnittler, M., 2019, In: Fungal Ecology. 41, p. 177-186 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The scent of symbiosis: gut bacteria may affect social interactions in leaf-cutting ants
Teseo, S., van Zweden, J. S., Pontieri, L., Kooij, P. W., Sørensen, Søren Johannes, Wenseleers, T., Poulsen, Michael, Boomsma, Jacobus J. & Sapountzis, P., 2019, In: Animal Behaviour. 150, p. 239-254Research output: Contribution to journal › Journal article › Research › peer-review
- 2018
- Published
Staphylococcus aureus coagulases are exploitable yet stable public goods in clinically relevant conditions
Trivedi, Urvish, Madsen, Jonas Stenløkke, Everett, J., Fell, C., Russel, J., Haaber, J., Crosby, H. A., Horswill, A. R., Burmølle, Mette, Rumbaugh, K. P. & Sørensen, Søren Johannes, 11 Dec 2018, In: Proceedings of the National Academy of Sciences of the United States of America. 115, 50, p. E11771-E11779Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Enhanced bacterial mutualism through an evolved biofilm phenotype
Røder, Henriette Lyng, Herschend, J., Russel, J., Andersen, M. F., Madsen, Jonas Stenløkke, Sørensen, Søren Johannes & Burmølle, Mette, 1 Nov 2018, In: I S M E Journal. 12, p. 2608-2618 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A culture-independent method for studying transfer of IncI1 plasmids from wild-type Escherichia coli in complex microbial communities
Anjum, M., Madsen, Jonas Stenløkke, Espinosa-Gongora, C., Jana, B., Wiese, M., Nielsen, Dennis Sandris, Sørensen, Søren Johannes, Moodley, Arshnee, Bortolaia, V. & Guardabassi, Luca, Sep 2018, In: Journal of Microbiological Methods. 152, p. 18-26 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Estimating the Transfer Range of Plasmids Encoding Antimicrobial Resistance in a Wastewater Treatment Plant Microbial Community
Li, L., Dechesne, A., He, Z., Madsen, Jonas Stenløkke, Nesme, Joseph, Sørensen, Søren Johannes & Smets, B. F., 8 May 2018, In: Environmental Science & Technology Letters. 5, 5, p. 260-265 6 p.Research output: Contribution to journal › Letter › Research › peer-review
- Published
Genetic barcoding of dark-spored myxomycetes (Amoebozoa): identification, evaluation and application of a sequence similarity threshold for species differentiation in NGS studies
Dahl, M. B., Brejnrod, A. D., Unterseher, M., Hoppe, T., Feng, Y., Novozhilov, Y., Sørensen, Søren Johannes & Schnittler, M., Mar 2018, In: Molecular Ecology Resources. 18, 2, p. 306-318 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Long-term industrial metal contamination unexpectedly shaped diversity and activity response of sediment microbiome
Jacquiod, S. J. A., Cyriaque, V., Riber, Leise, Al-Soud, W. A., Gillan, D. C., Wattiez, R. & Sørensen, Søren Johannes, 15 Feb 2018, In: Journal of Hazardous Materials. 344, p. 299-307 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Soil bacteria show different tolerance ranges to an unprecedented disturbance
Nunes, I. M., Jurburg, S., Jacquiod, S. J. A., Brejnrod, A. D., Falcão Salles, J., Priemé, Anders & Sørensen, Søren Johannes, Feb 2018, In: Biology and Fertility of Soils. 54, 2, p. 189–202 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Microbial indicators for soil quality
Schloter, M., Nannipieri, P., Sørensen, Søren Johannes & van Elsas, J. D., Jan 2018, In: Biology and Fertility of Soils. 54, 1, p. 1-10 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Rifaximin has minor effects on bacterial composition, inflammation and bacterial translocation in cirrhosis: a randomized trial
Kimer, N., Pedersen, J. S., Tavenier, J., Christensen, J. E., Busk, T. M., Hobolth, L., Krag, A., Abu Al-Soud, W., Mortensen, M. S., Sørensen, Søren Johannes, Møller, Søren & Bendtsen, Flemming, Jan 2018, In: Journal of Gastroenterology and Hepatology. 33, 1, p. 307-314 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
In situ metabolomic- and transcriptomic-profiling of the host-associated cyanobacteria Prochloron and Acaryochloris marina
Behrendt, L., Raina, J., Lutz, A., Kot, W., Albertsen, M., Nielsen, P. H., Sørensen, Søren Johannes, Larkum, A. W. D. & Kühl, Michael, 2018, In: I S M E Journal. 12, p. 556–567 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
An intriguing relationship between the cyclic diguanylate signaling system and horizontal gene transfer
Madsen, Jonas Stenløkke, Hylling, Ole, Jacquiod, S. J. A., Pécastaings, S., Hansen, L. H., Riber, Leise, Vestergaard, G. A. & Sørensen, Søren Johannes, 2018, In: ISME Journal. 12, 9, p. 2330-2334 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Bacterial social interactions and the emergence of community-intrinsic properties
Madsen, Jonas Stenløkke, Sørensen, Søren Johannes & Burmølle, Mette, 2018, In: Current Opinion in Microbiology. 42, p. 104-109 6 p.Research output: Contribution to journal › Review › Research › peer-review
- Published
Bulk soil and maize rhizosphere resistance genes, mobile genetic elements and microbial communities are differently impacted by organic and inorganic fertilization
Wolters, B., Jacquiod, S. J. A., Sørensen, Søren Johannes, Widyasari-Mehta, A., Bech, T. B., Kreuzig, R. & Smalla, K., 2018, In: F E M S Microbiology Ecology. 94, 4, 13 p., fiy027.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Changes in rumen bacterial and archaeal communities over the transition period in primiparous Holstein dairy cows
Zhu, Z., Kristensen, L., Difford, G. F., Poulsen, M., Noel, S. J., Abu Al-Soud, W., Sørensen, Søren Johannes, Lassen, J., Løvendahl, P. & Højberg, O., 2018, In: Journal of Dairy Science. 101, 11, p. 9847-9862Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Enrichment and characterization of an environmental microbial consortium displaying efficient keratinolytic activity
Kang, D., Herschend, J., Abu Al-Soud, W., Mortensen, M. S., Gonzalo, M., Jacquiod, S. J. A. & Sørensen, Søren Johannes, 2018, In: Bioresource Technology. 270, p. 303-310Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Fluorescence recovery allows theimplementation of a fluorescence reporter gene platform applicable for the detection and quantification of horizontal gene transfer in anoxic environments
Pinilla Redondo, Rafael, Riber, Leise & Sørensen, Søren Johannes, 2018, In: Applied and Environmental Microbiology. 84, 6, 9 p., e02507-17.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Free-Living Nematodes Together With Associated Microbes Play an Essential Role in Apple Replant Disease
Kanfra, X., Liu, B., Beerhues, L., Sørensen, Søren Johannes & Heuer, H., 2018, In: Frontiers in Plant Science. 9, p. 1-13 1666.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
How Microbial Aggregates Protect against Nanoparticle Toxicity
Tang, J., Wu, Y., Esquivel-Elizondo, S., Sørensen, Søren Johannes & Rittmann, B. E., 2018, In: Trends in Biotechnology. 36, 11, p. 1171-1182Research output: Contribution to journal › Review › Research › peer-review
- Published
Investigation of the bacteriophage community in induced lysates of undefined mesophilic mixed-strain DL-cultures using classical and metagenomic approaches
Muhammed, Musemma Kedir, Olsen, M. L., Kot, Witold, Neve, H., Castro Mejia, J. L., Janzen, T., Hansen, L. H., Nielsen, Dennis Sandris, Sørensen, Søren Johannes, Heller, K. J. & Vogensen, Finn Kvist, 2018, In: International Journal of Food Microbiology. 272, p. 61-72 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Long-term soil metal exposure impaired temporal variation in microbial metatranscriptomes and enriched active phages
Jacquiod, S., Nunes, I., Brejnrod, A., Hansen, M. A., Holm, Peter Engelund, Johansen, A., Brandt, Kristian Koefoed, Priemé, Anders & Sørensen, Søren Johannes, 2018, In: Microbiome. 6, p. 1-14 223.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Maturation of the gut microbiome and risk of asthma in childhood
Stokholm, Jakob, Blaser, M. J., Thorsen, Jonathan Jan Ilve, Rasmussen, Morten Arendt, Waage, J. E., Vinding, R. K., Schoos, A. M., Kunøe, A., Fink, N. R., Chawes, Bo Lund Krogsgaard, Bønnelykke, Klaus, Brejnrod, A. D., Mortensen, M. S., Abu Al-Soud, W., Sørensen, Søren Johannes & Bisgaard, H., 2018, In: Nature Communications. 9, 10 p., 141.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Micro-scale intermixing: a requisite for stable and synergistic co-establishment in a four-species biofilm
Liu, W., Russel, J., Burmølle, Mette, Sørensen, Søren Johannes & Madsen, Jonas Stenløkke, 2018, In: I S M E Journal. 12, p. 1940-1951 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Microbial diversity and putative opportunistic pathogens in dishwasher biofilm communities
Raghupathi, P. K., Zupančič, J., Brejnrod, A. D., Jacquiod, S. J. A., Houf, K., Burmølle, Mette, Gunde-Cimerman, N. & Sørensen, Søren Johannes, 2018, In: Applied and Environmental Microbiology. 84, 5, 17 p., e02755-17.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Monitoring plasmid-mediated horizontal gene transfer in microbiomes: recent advances and future perspectives
Pinilla Redondo, Rafael, Cyriaque, V., Jacquiod, S., Sørensen, Søren Johannes & Riber, Leise, 2018, In: Plasmid. 99, p. 56-67Research output: Contribution to journal › Review › Research › peer-review
- Published
Nutrient Fortification of Human Donor Milk Affects Intestinal Function and Protein Metabolism in Preterm Pigs
Sun, Jing, Li, Y., Nguyen, Duc Ninh, Mortensen, M. S., van den Akker, C. H. P., Skeath, T., Pors, S. E., Pankratova, Stanislava, Rudloff, S., Sørensen, Søren Johannes, Burrin, D. G., Thymann, Thomas & Sangild, Per Torp, 2018, In: Journal of Nutrition. 148, 3, p. 336-347 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Short- and long-term impacts of azithromycin treatment on the gut microbiota in children: a double-blind, randomized, placebo-controlled trial
Wei, S., Mortensen, M. S., Stokholm, Jakob, Brejnrod, A. D., Thorsen, Jonathan Jan Ilve, Rasmussen, Morten Arendt, Trivedi, Urvish, Bisgaard, H. & Sørensen, Søren Johannes, 2018, In: EBioMedicine. 38, p. 265-272Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Stability and resilience of the intestinal microbiota in children in daycare - a 12 month cohort study
Mortensen, M. S., Jensen, Betina Hebbelstrup, Williams, J., Brejnrod, A. D., Andersen, L. O., Röser, D., Andreassen, B. U., Petersen, Andreas Munk, Stensvold, C. R., Sørensen, Søren Johannes & Krogfelt, K. A., 2018, In: BMC Microbiology. 18, 11 p., 223.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Synergistic Interactions in Microbial Biofilms Facilitate the Establishment of Opportunistic Pathogenic Fungi in Household Dishwashers
Zupancic, J., Raghupathi, P. K., Houf, K., Burmølle, Mette, Sørensen, Søren Johannes & Gunde-Cimerman, N., 2018, In: Frontiers in Microbiology. 9, 13 p., 21.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Synergistic Interactions within a Multispecies Biofilm Enhance Individual Species Protection against Grazing by a Pelagic Protozoan
Raghupathi, P. K., Liu, W., Sabbe, K., Houf, K., Burmølle, Mette & Sørensen, Søren Johannes, 2018, In: Frontiers in Microbiology. 8, 11 p., 2649.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The bacterial microbiota in first-void urine from men with and without idiopathic urethritis
Frølund, M., Wikström, A., Lidbrink, P., Abu Al-Soud, W., Larsen, N., Harder, C. B., Sørensen, Søren Johannes, Jensen, J. S. & Ahrens, P., 2018, In: PLoS ONE. 13, 7, p. 1-19 e0201380.Research output: Contribution to journal › Journal article › Research › peer-review
- 2017
- Published
A meta-proteomics approach to study the interspecies interactions affecting microbial biofilm development in a model community
Herschend, J., Damholt, Z. B. V., Marquard, A. M., Svensson, B., Sørensen, Søren Johannes, Hägglund, Per Mårten & Burmølle, Mette, 28 Nov 2017, In: Scientific Reports. 7, 13 p., 16483.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Community structure of the metabolically active rumen bacterial and archaeal communities of dairy cows over the transition period
Zhu, Z., Noel, S. J., Difford, G. F., Abu Al-Soud, W., Brejnrod, A. D., Sørensen, Søren Johannes, Lassen, J., Løvendahl, P. & Højberg, O., 8 Nov 2017, In: PLoS ONE. 12, 11, 24 p., e0187858.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A novel baiting microcosm approach used to identify the bacterial community associated with Penicillium bilaii hyphae in soil
Ghodsalavi, B., Svenningsen, N. B., Hao, X., Olsson, S., Nicolaisen, Mette Haubjerg, Al-Soud, W. A., Sørensen, Søren Johannes & Nybroe, O., 27 Oct 2017, In: PLOS ONE. 12, 10, 14 p., e0187116.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Antagonism correlates with metabolic similarity in diverse bacteria
Russel, J., Røder, Henriette Lyng, Madsen, Jonas Stenløkke, Burmølle, Mette & Sørensen, Søren Johannes, 3 Oct 2017, In: Proceedings of the National Academy of Science of the United States of America. 114, 40, p. 10684-10688 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Response of the bacterial community in an on-farm biopurification system, to which diverse pesticides are introduced over an agricultural season
Holmsgaard, P. N., Dealtry, S., Dunon, V., Heuer, H., Hansen, Lars Hestbjerg, Springael, D., Smalla, K., Riber, Leise & Sørensen, Søren Johannes, Oct 2017, In: Environmental Pollution. 229, p. 854-862 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Effects of soil pre-treatment with Basamid© granules, Brassica juncea, Raphanus sativus, and Tagetes patula on bacterial and fungal communities at two apple replant disease sites
Yim, B., Nitt, H., Wrede, A., Jacquiod, S. J. A., Sørensen, Søren Johannes, Winkelmann, T. & Smalla, K., 1 Sep 2017, In: Frontiers in Microbiology. 8, 15 p., 1604.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Deciphering conjugative plasmid permissiveness in wastewater microbiomes
Jacquiod, S. J. A., Brejnrod, A. D., Milani, S. M., Abu Al-Soud, W., Sørensen, Søren Johannes & Riber, Leise, Jul 2017, In: Molecular Ecology. 26, 13, p. 3556-3571 16 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Microbiomes associated with infective stages of root-knot and lesion nematodes in soil
Elhadyl, A., Giné, A., Topalovic, O., Jacquiod, S. J. A., Sørensen, Søren Johannes, Javier Sorribas, F. & Heuer, H., 4 May 2017, In: PLoS ONE. 12, 5, 17 p., e0177145.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Autogenic succession and deterministic recovery following disturbance in soil bacterial communities
Jurburg, S. D., Nunes, I. M., Stegen, J. C., Le Roux, X., Priemé, Anders, Sørensen, Søren Johannes & Salles, J. F., 6 Apr 2017, In: Scientific Reports. 7, 11 p., 45691.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Alterations of the murine gut microbiome in allergic airway disease are independent of surfactant protein D
Barfod, K. K., Roggenbuck, M., Al-Shuweli, S., Fakih, D., Sørensen, Søren Johannes & Sørensen, G. L., Mar 2017, In: Heliyon. 3, 3, 19 p., e00262.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A post-planktonic era of in vitro infectious models: issues and changes addressed by a clinically relevant wound like media
Trivedi, Urvish, Madsen, Jonas Stenløkke, Rumbaugh, K. P., Wolcott, R. D., Burmølle, Mette & Sørensen, Søren Johannes, 2017, In: Critical Reviews in Microbiology. 43, 4, p. 453-465 12 p.Research output: Contribution to journal › Review › Research › peer-review
- Published
Comparative genomic analysis reveals ecological differentiation in the genus Carnobacterium
Iskandar, C. F., Borges, F., Taminiau, B., Daube, G., Zagorec, M., Remenant, B., Leisner, Jørgen, Hansen, M. A., Sørensen, Søren Johannes, Mangavel, C., Cailliez-Grimal, C. & Revol-Junelles, A., 2017, In: Frontiers in Microbiology. 8, 14 p., 357.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Critical Assessment of Metagenome Interpretation: a benchmark of metagenomics software
Sczyrba, A., Hofmann, P., Belmann, P., Koslicki, D., Janssen, S., Dröge, J., Gregor, I., Majda, S., Fiedler, J., Dahms, E., Bremges, A., Fritz, A., Garrido-Oter, R., Jørgensen, T. S., Shapiro, N., Blood, P. D., Gurevich, A., Bai, Y., Turaev, D., DeMaere, M. Z. & 47 others, , 2017, In: Nature Methods. 14, 11, p. 1063-1071 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Distinct gene expression profile of Xanthomonas retroflexus engaged in synergistic multispecies biofilm formation
Hansen, L. B. S., Ren, D., Burmølle, Mette & Sørensen, Søren Johannes, 2017, In: The ISME Journal. 11, 1, p. 300-303 4 p.Research output: Contribution to journal › Letter › Research › peer-review
- Published
It is elemental: soil nutrient stoichiometry drives bacterial diversity
Delgado-Baquerizo, M., Reich, P. B., Khachane, A. N., Campbell, C. D., Thomas, N., Freitag, T. E., Abu Al-Soud, W., Sørensen, Søren Johannes, Bardgett, R. D. & Singh, B. K., 2017, In: Environmental Microbiology. 19, 3, p. 1176-1188 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Legacy Effects on the Recovery of Soil Bacterial Communities from Extreme Temperature Perturbation
Jurburg, S. D., Nunes, I. M., Brejnrod, A. D., Jacquiod, S. J. A., Priemé, Anders, Sørensen, Søren Johannes, Van Elsas, J. D. & Salles, J. F., 2017, In: Frontiers in Microbiology. 8, 13 p., 1832.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Low-abundant species facilitates specific spatial organization that promotes multispecies biofilm formation
Liu, W., Russel, J., Røder, Henriette Lyng, Madsen, Jonas Stenløkke, Burmølle, Mette & Sørensen, Søren Johannes, 2017, In: Environmental Microbiology. 19, 7, p. 2893-2905 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Metagenomic analysis of dairy bacteriophages: extraction method and pilot study on whey samples derived from using undefined and defined mesophilic starter cultures
Muhammed, Musemma Kedir, Kot, Witold, Neve, H., Mahony, J., Castro Mejia, J. L., Krych, Lukasz, Hansen, L. H., Nielsen, Dennis Sandris, Sørensen, Søren Johannes, Heller, K. J., van Sinderen, D. & Vogensen, Finn Kvist, 2017, In: Applied and Environmental Microbiology. 83, 19, 15 p., e00888-17.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Metal stressors consistently modulate bacterial conjugal plasmid uptake potential in a phylogenetically conserved manner
Klümper, U., Dechesne, A., Riber, Leise, Brandt, Kristian Koefoed, Gülay, A., Sørensen, Søren Johannes & Smets, B. F., 2017, In: The ISME Journal. 11, 1, p. 152-165 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Plasmids, viruses, and other circular elements in rat gut
Jørgensen, T. S., Hansen, M. A., Xu, Z., Tabak, M. A., Sørensen, Søren Johannes & Hansen, Lars Hestbjerg, 2017, Cold Spring Harbor Laboratory Press, 30 p.Research output: Working paper › Research
- Published
Whole-genome sequence of Pseudomonas fluorescens EK007-RG4, a promising biocontrol agent against a broad range of bacteria, including the fire blight bacterium Erwinia amylovora
Habibi, R., Tarighi, S., Behravan, J., Taheri, P., Kjøller, Annelise Helene, Brejnrod, A. D., Madsen, Jonas Stenløkke & Sørensen, Søren Johannes, 2017, In: Genome Announcements. 5, 13, 2 p., e00026-17.Research output: Contribution to journal › Journal article › Research › peer-review
- 2016
- Published
Back to the future of soil metagenomics
Nesme, J., Achouak, W., Agathos, S. N., Bailey, M., Baldrian, P., Brunel, D., Frostegard, A., Heulin, T., Jansson, J. K., Jurkevitch, E., Kruus, K. L., Kowalchuk, G. A., Lagares, A., Lappin-Scott, H. M., Lemanceau, P., Le Paslier, D., Mandic-Mulec, I., Murrell, J. C., Myrold, D. D., Nalin, R. & 28 others, , 2016, In: Frontiers in Microbiology. 7, 5 p., 73.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Bacterial communities in termite fungus combs are comprised of consistent gut deposits and contributions from the environment
Otani, S., Hansen, Lars Hestbjerg, Sørensen, Søren Johannes & Poulsen, Michael, 2016, In: Microbial Ecology. 71, 1, p. 207-220 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Coexistence facilitates interspecific biofilm formation in complex microbial communities
Madsen, Jonas Stenløkke, Røder, Henriette Lyng, Russel, J., Sørensen, Helle, Burmølle, Mette & Sørensen, Søren Johannes, 2016, In: Environmental Microbiology. 18, 8, p. 2565–2574Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Coping with copper: legacy effect of copper on potential activity of soil bacteria following a century of exposure
Nunes, I. M., Jacquiod, S. J. A., Brejnrod, A. D., Holm, Peter Engelund, Johansen, A., Brandt, Kristian Koefoed, Priemé, Anders & Sørensen, Søren Johannes, 2016, In: F E M S Microbiology Ecology. 92, 11, 12 p., fiw175.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Diverse gene functions in a soil mobilome
Luo, W., Xu, Z., Riber, Leise, Hansen, Lars Hestbjerg & Sørensen, Søren Johannes, 2016, In: Soil Biology & Biochemistry. 101, p. 175-183 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Draft genome assembly of two Pseudoclavibacter helvolus strains, G8 and W3, isolated from slaughterhouse environments
Raghupathi, P. K., Herschend, J., Røder, Henriette Lyng, Sørensen, Søren Johannes & Burmølle, Mette, 2016, In: Genome Announcements. 4, 2, 1 p., e00077-16.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Draft genome sequences of two Kocuria isolates, K. salsicia G1 and K. rhizophila G2, isolated from a slaughterhouse in Denmark
Herschend, J., Raghupathi, P. K., Røder, Henriette Lyng, Sørensen, Søren Johannes & Burmølle, Mette, 2016, In: Genome Announcements. 4, 2, 2 p., e00075-16.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Ecological patterns, diversity and core taxa of microbial communities in groundwater-fed rapid gravity filters
Gülay, A., Musovic, S., Albrechtsen, H., Abu Al-Soud, W., Sørensen, Søren Johannes & Smets, B. F., 2016, In: The ISME Journal. 10, 9, p. 2209-2222 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Enhanced plasmid loss in bacterial populations exposed to the antimicrobial compound irgasan delivered from interpenetrating polymer network silicone hydrogels
Riber, Leise, Burmølle, Mette, Alm, M., Milani, S. M., Thomsen, P., Hansen, Lars Hestbjerg & Sørensen, Søren Johannes, 2016, In: Plasmid. 87-88, p. 72-78 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Exploring the complex response to linuron of bacterial communities from biopurification systems by means of cultivation-independent methods
Dealtry, S., Nour, E. H., Holmsgaard, P. N., Ding, G. C., Weichelt, V., Dunon, V., Heuer, H., Hansen, Lars Hestbjerg, Sørensen, Søren Johannes, Springael, D. & Smalla, K., 2016, In: F E M S Microbiology Ecology. 92, 2, 12 p., fiv157.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genome sequence of Arthrobacter antarcticus strain W2, isolated from a slaughterhouse
Herschend, J., Raghupathi, P. K., Røder, Henriette Lyng, Sørensen, Søren Johannes & Burmølle, Mette, 2016, In: Genome Announcements. 4, 2, 2 p., e00073-16.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genome sequence of Kocuria palustris strain W4
Herschend, J., Raghupathi, P. K., Røder, Henriette Lyng, Sørensen, Søren Johannes & Burmølle, Mette, 2016, In: Genome Announcements. 4, 2, 1 p., e00074-16.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genome sequence of Kocuria varians G6 ssolated from a slaughterhouse in Denmark
Raghupathi, P. K., Herschend, J., Røder, Henriette Lyng, Sørensen, Søren Johannes & Burmølle, Mette, 2016, In: Genome Announcements. 4, 2, 2 p., e00076-16.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genome sequence of Psychrobacter cibarius strain W1
Raghupathi, P. K., Herschend, J., Røder, Henriette Lyng, Sørensen, Søren Johannes & Burmølle, Mette, 2016, In: Genome Announcements. 4, 3, 1 p., e00078-16.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genomic and exoproteomic analyses of cold- and alkaline-adapted bacteria reveal an abundance of secreted subtilisin-like proteases
Lylloff, J. E., Hansen, L. B. S., Jepsen, M., Sanggaard, K. W., Vester, J. K., Enghild, J. J., Sørensen, Søren Johannes, Stougaard, P. & Glaring, M. A., 2016, In: Microbial Biotechnology. 9, 2, p. 245-256 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
High frequencies of antibiotic resistance genes in infants' meconium and early fecal samples
Gosalbes, M. J., Vallès, Y., Jiménez-Hernández, N., Balle, C., Riva, P., Miravet-Verde, S., de Vries, Lisbeth Elvira, Llop, S., Agersø, Y., Sørensen, Søren Johannes, Ballester, F. & Francino, M. P., 2016, In: Journal of Developmental Origins of Health and Disease. 7, 01, p. 35-44 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Interspecific bacterial interactions are reflected in multispecies biofilm spatial organization
Liu, W., Røder, Henriette Lyng, Madsen, Jonas Stenløkke, Bjarnsholt, Thomas, Sørensen, Søren Johannes & Burmølle, Mette, 2016, In: Frontiers in Microbiology. 7, 8 p., 1366.Research output: Contribution to journal › Review › Research › peer-review
- Published
Large-scale benchmarking reveals false discoveries and count transformation sensitivity in 16S rRNA gene amplicon data analysis methods used in microbiome studies
Thorsen, Jonathan Jan Ilve, Brejnrod, A. D., Mortensen, M. S., Rasmussen, Morten Arendt, Stokholm, Jakob, Abu Al-Soud, W., Sørensen, Søren Johannes, Bisgaard, H. & Waage, J. E., 2016, In: Microbiome. 4, 14 p., 62.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Metagenomes provide valuable comparative information on soil microeukaryotes
Jacquiod, S. J. A., Stenbæk, J., Santos, S. S., Winding, A., Sørensen, Søren Johannes & Priemé, Anders, 2016, In: Research in Microbiology. 167, 5, p. 436-450 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Natural decay process affects the abundance and community structure of Bacteria and Archaea in Picea abies logs
Rinta-Kanto, J. M., Sinkko, H., Rajala, T., Abu Al-Soud, W., Sørensen, Søren Johannes, Tamminen, M. V. & Timonen, S., 2016, In: F E M S Microbiology Ecology. 92, 7, 10 p., fiw087.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Plasmid metagenomics reveals multiple antibiotic resistance gene classes among the gut microbiomes of hospitalised patients
Jitwasinkul, T., Suriyaphol, P., Tangphatsornruang, S., Hansen, M. A., Hansen, Lars Hestbjerg, Sørensen, Søren Johannes, Permpikul, C., Rongrungruang, Y. & Tribuddharat, C., 2016, In: Journal of Global Antimicrobial Resistance. 6, p. 57-66 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Studying bacterial multispecies biofilms: where to start?
Røder, Henriette Lyng, Sørensen, Søren Johannes & Burmølle, Mette, 2016, In: Trends in Microbiology. 24, 6, p. 503-513 11 p.Research output: Contribution to journal › Review › Research › peer-review
- Published
The developing hypopharyngeal microbiota in early life
Mortensen, M. S., Brejnrod, A. D., Roggenbuck, M., Abu Al-Soud, W., Balle, C., Krogfelt, K. A., Stokholm, Jakob, Thorsen, Jonathan Jan Ilve, Waage, J. E., Rasmussen, Morten Arendt, Bisgaard, H. & Sørensen, Søren Johannes, 2016, In: Microbiome. 4, 12 p., 70.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Type 3 fimbriae encoded on plasmids are expressed from a unique promoter without affecting host motility, facilitating an exceptional phenotype that enhances conjugal plasmid transfer
Madsen, Jonas Stenløkke, Riber, Leise, Kot, Witold, Basfeld, A., Burmølle, Mette, Hansen, Lars Hestbjerg & Sørensen, Søren Johannes, 2016, In: P L o S One. 11, 9, 19 p., e0162390.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Vitamin D and allergic airway disease shape the murine lung microbiome in a sex-specific manner
Roggenbuck, M., Anderson, D., Barfod, K. K., Feelisch, M., Geldenhuys, S., Sørensen, Søren Johannes, Weeden, C. E., Hart, P. H. & Gorman, S., 2016, In: Respiratory Research. 17, 18 p., 116.Research output: Contribution to journal › Journal article › Research › peer-review
- 2015
- Published
High prevalence of biofilm synergy among bacterial soil isolates in cocultures indicates bacterial interspecific cooperation
Ren, D., Madsen, Jonas Stenløkke, Sørensen, Søren Johannes & Burmølle, Mette, 11 Jan 2015, In: ISME Journal. 9, p. 81-89 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Acromyrmex leaf-cutting ants have simple gut microbiota with nitrogen-fixing potential
Sapountzis, P., Zhukova, M., Hansen, Lars Hestbjerg, Sørensen, Søren Johannes, Schiøtt, M. & Boomsma, Jacobus J., 2015, In: Applied and Environmental Microbiology. 81, 16, p. 5527-5537 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Bacterial symbiont sharing in Megalomyrmex social parasites and their fungus-growing ant hosts
Liberti, J., Sapountzis, P., Hansen, Lars Hestbjerg, Sørensen, Søren Johannes, Adams, R. M. M. & Boomsma, Jacobus J., 2015, In: Molecular Ecology. 24, 12, p. 3151-3169 19 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Broad host range plasmids can invade an unexpectedly diverse fraction of a soil bacterial community
Klümper, U., Riber, Leise, Dechesne, A., Sannazzaro, A. I., Hansen, Lars Hestbjerg, Sørensen, Søren Johannes & Smets, B. F., 2015, In: I S M E Journal. 9, p. 934-945 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Chlorophyll f-driven photosynthesis in a cavernous cyanobacterium
Behrendt, L., Brejnrod, A. D., Schliep, M., Sørensen, Søren Johannes, Larkum, A. W. D. & Kühl, Michael, 2015, In: The ISME Journal. 9, 9, p. 2108-2111 4 p.Research output: Contribution to journal › Letter › Research › peer-review
- Published
Current strategies for mobilome research
Jørgensen, T. S., Kiil, A. S., Hansen, M. A., Sørensen, Søren Johannes & Hansen, Lars Hestbjerg, 2015, In: Frontiers in Microbiology. 5, 6 p., 750.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Draft genome sequences of two protease-producing strains of Arsukibacterium, isolated from two cold and alkaline environments
Lylloff, J. E., Hansen, L. B. S., Jepsen, M., Hallin, P. F., Sørensen, Søren Johannes, Stougaard, P. & Glaring, M. A., 2015, In: Genome Announcements. 3, 3, 2 p., e00585-15.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Facultative control of matrix production optimizes competitive fitness in Pseudomonas aeruginosa PA14 biofilm models
Madsen, Jonas Stenløkke, Lin, Y. C., Squyres, G. R., Price-Whelan, A., Torio, A. D. S., Song, A., Cornell, W. C., Sørensen, Søren Johannes, Xavier, J. B. & Dietrich, L. E. P., 2015, In: Applied and Environmental Microbiology. 81, 24, p. 8414-8426 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Identification of the amidase BbdA that initiates biodegradation of the groundwater micropollutant 2,6-dichlorobenzamide (BAM) in Aminobacter sp. MSH1
T'Syen, J., Tassoni, R., Hansen, Lars Hestbjerg, Sørensen, Søren Johannes, Leroy, B., Sekhar, A., Wattiez, R., De Mot, R. & Springael, D., 2015, In: Environmental Science & Technology (Washington). 49, 19, p. 11703-11713 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Identifying qualitative effects of different grazing types on below-ground communities and function in a long-term field experiment
Macdonald, C. A., Crawley, M. J., Wright, D. J., Kuczynski, J., Robinson, L., Knight, R., Abu Al-Soud, W., Sørensen, Søren Johannes, Deng, Y., Zhou, J. & Singh, B. K., 2015, In: Environmental Microbiology. 17, 3, p. 841-854 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Interspecies interactions result in enhanced biofilm formation by co-cultures of bacteria isolated from a food processing environment
Røder, Henriette Lyng, Raghupathi, P. K., Herschend, J., Brejnrod, A. D., Knoechel, Susanne, Sørensen, Søren Johannes & Burmølle, Mette, 2015, In: Food Microbiology. 51, p. 18-24 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Maize lines with different nitrogen use efficiency select bacterial communities with different β-glucosidase-encoding genes and glucosidase activity in the rhizosphere
Pathan, S. I., Ceccherini, M. T., Hansen, M. A., Giagnoni, L., Ascher, J., Arenella, M., Sørensen, Søren Johannes, Pietramellara, G., Nannipieri, P. & Renella, G., 2015, In: Biology and Fertility of Soils. 51, 8, p. 995-1004 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Microbial diversity and dynamics throughout manufacturing and ripening of surface ripened semi-hard Danish Danbo cheeses investigated by culture-independent techniques
Ryssel, M., Johansen, P., Abu Al-Soud, W., Sørensen, Søren Johannes, Arneborg, Nils & Jespersen, Lene, 2015, In: International Journal of Food Microbiology. 215, p. 124-30 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Microbial diversity in a permanently cold and alkaline environment in Greenland
Glaring, M. A., Vester, J. K., Lylloff, J. E., Abu Al-Soud, W., Sørensen, Søren Johannes & Stougaard, P., 2015, In: PLoS ONE. 10, 4, 22 p., e0124863.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Natural hot spots for gain of multiple resistances: arsenic and antibiotic resistances in heterotrophic, aerobic bacteria from marine hydrothermal vent fields
Farias, P., Santo, C. E., Branco, R., Francisco, R., Santos, S., Hansen, Lars Hestbjerg, Sørensen, Søren Johannes & Morais, P. V., 2015, In: Applied and Environmental Microbiology. 81, 7, p. 2534-2543 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Phenotypic variability in bioprocessing conditions can be tracked on the basis of on-line flow cytometry and fits to a scaling law
Baert, J., Kinet, R., Brognaux, A., Delepierre, A., Telek, S., Sørensen, Søren Johannes, Riber, Leise, Fickers, P. & Delvigne, F., 2015, In: Biotechnology Journal. 10, 8, p. 1316-1325 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Shifts in the microbial community structure explain the response of soil respiration to land-use change but not to climate warming
Nazaries, L., Tottey, W., Robinson, L., Khachane, A., Abu Al-Soud, W., Sørensen, Søren Johannes & Singh, B. K., 2015, In: Soil Biology & Biochemistry. 89, p. 123-134 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Similar sponge-associated bacteria can be acquired via both vertical and horizontal transmission
Sipkema, D., de Caralt, S., Morillo, J. A., Abu Al-Soud, W., Sørensen, Søren Johannes, Smidt, H. & Uriz, M. J., 2015, In: Environmental Microbiology. 17, 10, p. 3807-3821 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2014
- Published
An improved method for including upper size range plasmids in metamobilomes
Norman, A., Riber, Leise, Luo, W., Li, L., Hansen, Lars Hestbjerg & Sørensen, Søren Johannes, 2014, In: PLoS ONE. 9, 8, 12 p., e104405.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Bioinformatic approaches reveal metagenomic characterization of soil microbial community
Xu, Z., Hansen, M. A., Hansen, Lars Hestbjerg, Jacquiod, S. J. A. & Sørensen, Søren Johannes, 2014, In: P L o S One. 9, 4, 11 p., e93445.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Characterization of the gut microbiota in leptin deficient obese mice: correlation to inflammatory and diabetic parameters
Ellekilde, M., Krych, Lukasz, Hansen, Camilla Hartmann Friis, Hufeldt, M. R., Dahl, K., Hansen, Lars Hestbjerg, Sørensen, Søren Johannes, Vogensen, Finn Kvist, Nielsen, Dennis Sandris & Hansen, Axel Kornerup, 2014, In: Research in Veterinary Science. 96, 2, p. 241-250 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Complete genome sequences of four novel Lactococcus lactis phages distantly related to the Rare 1706 Phage Species
Kot, Witold, Neve, H., Vogensen, Finn Kvist, Heller, K. J., Sørensen, Søren Johannes & Hansen, L. H., 2014, In: Genome Announcements. 2, 4, 2 p., e00265-14.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
DPS - a rapid method for genome sequencing of DNA-containing bacteriophages directly from a single plaque
Kot, Witold, Vogensen, Finn Kvist, Sørensen, Søren Johannes & Hansen, Lars Hestbjerg, 2014, In: Journal of Virological Methods. 196, p. 152-156 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Draft genome sequence of Burkholderia sordidicola S170, a potential plant growth promoter isolated from coniferous forest soil in the Czech Republic
Lladó, S., Xu, Z., Sørensen, Søren Johannes & Baldrian, P., 2014, In: Genome Announcements. 2, 4, 2 p., e00810-14.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Exploring the immediate and long-term impact on bacterial communities in soil amended with animal and urban organic waste fertilizers using pyrosequencing and screening for horizontal transfer of antibiotic resistance
Riber, Leise, Poulsen, P. H. B., Abu Al-Soud, W., Hansen, L. B. S., Bergmark, L., Brejnrod, A. D., Norman, A., Hansen, Lars Hestbjerg, Magid, Jakob & Sørensen, Søren Johannes, 2014, In: F E M S Microbiology Ecology. 90, 1, p. 206-224 19 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genome sequence of Leuconostoc mesenteroides subsp. cremoris strain T26, isolated from mesophilic undefined cheese starter
Pedersen, T. B., Kot, Witold, Hansen, L. H., Sørensen, Søren Johannes, Broadbent, J. R., Vogensen, Finn Kvist & Ardö, Ylva Margareta, 2014, In: Genome Announcements. 2, 3, 1 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genome sequences of two Leuconostoc pseudomesenteroides strains isolated from Danish dairy starter cultures
Pedersen, T. B., Kot, Witold, Hansen, L. H., Sørensen, Søren Johannes, Broadbent, J. R., Vogensen, Finn Kvist & Ardö, Ylva Margareta, 2014, In: Genome Announcements. 2, 3, p. 2 e00484-14.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
High-throughput screening of multispecies biofilm formation and quantitative PCR-based assessment of individual species proportions, useful for exploring interspecific bacterial interactions
Ren, D., Madsen, Jonas Stenløkke, de la Cruz Perera, C. I., Bergmark, L., Sørensen, Søren Johannes & Burmølle, Mette, 2014, In: Microbial Ecology. 68, 1, p. 146-154 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Host-specific microbial communities in three sympatric North Sea sponges
Naim, M. A., Morillo, J. A., Sørensen, Søren Johannes, Abu Al-Soud, W., Smidt, H. & Sipkema, D., 2014, In: F E M S Microbiology Ecology. 90, 2, p. 390-403 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Hundreds of circular novel plasmids and DNA elements identified in a rat cecum metamobilome
Jørgensen, T. S., Xu, Z., Hansen, M. A., Sørensen, Søren Johannes & Hansen, L. H., 2014, In: P L o S One. 9, 2, 9 p., e87924.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes
Nielsen, H. B., Almeida, M., Juncker, A., Rasmussen, S., Li, J., Sunagawa, S., Plichta, D. R., Gautier, L., Pedersen, A. G., Le Chatelier, E., Pelletier, E., Bonde, I., Nielsen, T., Manichanh, C., Arumugam, M., Batto, J-M., dos Santos, M. B. Q., Blom, N., Borruel, N., Burgdorf, K. S. & 31 others, , 2014, In: Nature Biotechnology. 32, 8, p. 822–828 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Identifying the core microbial community in the gut of fungus-growing termites
Otani, S., Mikaelyan, A., Nobre, T., Hansen, Lars Hestbjerg, Koné, N. A., Sørensen, Søren Johannes, Aanen, D. K., Boomsma, Jacobus J., Brune, A. & Poulsen, Michael, 2014, In: Molecular Ecology. 23, 18, p. 4631–4644 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Interactions in multispecies biofilms: do they actually matter?
Burmølle, Mette, Ren, D., Bjarnsholt, Thomas & Sørensen, Søren Johannes, 2014, In: Trends in Microbiology. 22, 2, p. 84-91 8 p.Research output: Contribution to journal › Review › Research › peer-review
- Published
Loss of microbial diversity in soils is coincident with reductions in some specialized functions
Singh, B. K., Quince, C., Macdonald, C. A., Khachane, A., Thomas, N., Abu Al-Soud, W., Sørensen, Søren Johannes, He, Z., White, D., Sinclair, A., Crooks, B., Zhou, J. & Campbell, C. D., 2014, In: Environmental Microbiology. 16, 8, p. 2408-2420 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Mercuric reductase genes (merA) and mercury resistance plasmids in High Arctic snow, freshwater and sea-ice brine
Møller, A. K., Barkay, T., Hansen, M. A., Norman, A., Hansen, Lars Hestbjerg, Sørensen, Søren Johannes, Boyd, E. S. & Kroer, Niels, 2014, In: FEMS Microbiology Ecology. 87, 1, p. 52-63 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Metabolic variability in bioprocessing: implications of microbial phenotypic heterogeneity
Delvigne, F., Zune, Q., Lara, A. R., Abu Al-Soud, W. & Sørensen, Søren Johannes, 2014, In: Trends in Biotechnology. 32, 12, p. 608-616 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Methanotrophs, methanogens and microbial community structure in livestock slurry surface crusts
Duan, Y. F., Abu Al-Soud, W., Brejnrod, A. D., Sørensen, Søren Johannes, Elsgaard, L., Petersen, S. O. & Boon, N., 2014, In: Journal of Applied Microbiology. 117, 4, p. 1066-1078 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Rapid TaqMan-based quantification of chlorophyll d-containing cyanobacteria in the genus Acaryochloris
Behrendt, L., Nielsen, J. L., Sørensen, Søren Johannes, Larkum, A. W. D., Winther, Jakob R. & Kühl, Michael, 2014, In: Applied and Environmental Microbiology. 80, 10, p. 3244-3249 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Sequence and comparative analysis of Leuconostoc dairy bacteriophages
Kot, Witold, Hansen, Lars Hestbjerg, Neve, H., Hammer, K., Jacobsen, S., Pedersen, P. D., Sørensen, Søren Johannes, Heller, K. J. & Vogensen, Finn Kvist, 2014, In: International Journal of Food Microbiology. 176, p. 29-37 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Sequentially aerated membrane biofilm reactors for autotrophic nitrogen removal: microbial community composition and dynamics
Pellicer i Nàcher, C., Franck, S., Gülay, A., Ruscalleda, M., Terada, A., Abu Al-Soud, W., Hansen, M. A., Sørensen, Søren Johannes & Smets, B. F., 2014, In: Microbial Biotechnology. 7, 1, p. 32-43 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Shifts in abundance and diversity of mobile genetic elements after the introduction of diverse pesticides into an on-farm biopurification system over the course of a year
Dealtry, S., Holmsgaard, P. N., Dunon, V., Jechalke, S., Ding, G., Kroegerrecklenfort, E., Heuer, H., Hansen, Lars Hestbjerg, Springael, D., Zuehlke, S., Sørensen, Søren Johannes & Smalla, K., 2014, In: Applied and Environmental Microbiology. 80, 13, p. 4012-4020 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Synbiotic Lactobacillus acidophilus NCFM and cellobiose does not affect human gut bacterial diversity but increases abundance of lactobacilli, bifidobacteria and branched-chain fatty acids: a randomized, double-blinded cross-over trial
van Zanten, G. C., Krych, Lukasz, Röytiö, H., Forssten, S., Lahtinen, S. J., Abu Al-Soud, W., Sørensen, Søren Johannes, Svensson, B., Jespersen, Lene & Jakobsen, M., 2014, In: F E M S Microbiology Ecology. 90, 1, p. 225-236 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The giraffe (Giraffa camelopardalis) rumen microbiome
Roggenbuck, M., Sauer, C., Poulsen, M., Bertelsen, M. F. & Sørensen, Søren Johannes, 2014, In: F E M S Microbiology Ecology. 90, 1, p. 237-246 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The microbiome of New World vultures
Roggenbuck, M., Schnell, I. B., Blom, N., Bælum, J., Bertelsen, M. F., Sicheritz-Pontén, T., Sørensen, Søren Johannes, Gilbert, M Thomas P, Graves, G. R. & Hansen, L. H., 2014, In: Nature Communications. 5, 7 p., 5498.Research output: Contribution to journal › Journal article › Research › peer-review
- 2013
- Published
454 pyrosequencing analyses of bacterial and archaeal richness in 21 full-scale biogas digesters
Sundberg, C., Abu Al-Soud, W., Larsson, M., Alm, E., Yekta, S. S., Svensson, B. H., Sørensen, Søren Johannes & Karlsson, A., 2013, In: FEMS Microbiology Ecology. 85, 3, p. 612-626 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A low-cost, multiplexable, automated flow cytometry procedure for the characterization of microbial stress dynamics in bioreactors
Brognaux, A., Han, S., Sørensen, Søren Johannes, Lebeau, F., Thonart, P. & Delvigne, F., 2013, In: Microbial Cell Factories. 12, 100, 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A spatiotemporal view of plasmid loss in biofilms and planktonic cultures: [plus] Erratum
Madsen, Jonas Stenløkke, Burmølle, Mette & Sørensen, Søren Johannes, 2013, In: Biotechnology and Bioengineering (Print). 110, 12, p. 3071-3074 4 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Adaptation and heterogeneity of Escherichia coli MC1000 growing in complex environments
Puentes-Téllez, P., Hansen, M. A., Sørensen, Søren Johannes & van Elsas, J., 2013, In: Applied and Environmental Microbiology. 79, 3, p. 1008-1017 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Bacterial chitinolytic communities respond to chitin and pH alteration in soil
Kielak, A., Cretoiu, M., Semenov, A., Sørensen, Søren Johannes & van Elsas, J., 2013, In: Applied and Environmental Microbiology. 79, 1, p. 263-272 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Bacterial community structure in High-Arctic snow and freshwater as revealed by pyrosequencing of 16S rRNA genes and cultivation
Møller, A. K., Søborg, D. A., Abu Al-Soud, W., Sørensen, Søren Johannes & Kroer, Niels, 2013, In: Polar Research. 32, 11 p., 17390.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Cell mass and cell cycle dynamics of an asynchronous budding yeast population: Experimental observations, flow cytometry data analysis, and multi-scale modeling
Lencastre Fernandes, R., Carlquist, M., Neves Lundin, A. L., Heins, A., Dutta, A., Sørensen, Søren Johannes, Jensen, R. A., Nopens, I., Eliasson Lantz, A. & Gernaey, K., 2013, In: Biotechnology and Bioengineering (Print). 110, 3, p. 812-826 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Complete genome sequence of the cystic fibrosis pathogen Achromobacter xylosoxidans NH44784-1996 complies with important pathogenic phenotypes
Jakobsen, T. H., Hansen, M. A., Jensen, P. Ø., Hansen, L., Riber, L., Cockburn, A. P. I., Kolpen, M., Hansen, C. R., Ridderberg, W., Eickhardt-Sørensen, S. R., Hansen, M., Kerpedjiev, P., Alhede, M., Qvortrup, K., Burmølle, M., Moser, C. E., Kühl, M., Ciofu, O., Givskov, M., Sørensen, S. J. & 2 others, , 2013, In: P L o S One. 8, 7, 17 p., e68484.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Design of growth-dependent biosensors based on destabilized GFP for the detection of physiological behavior of Escherichia coli in heterogeneous bioreactors
Han, S., Delvigne, F., Brognaux, A., Charbon, G. E. & Sørensen, Søren Johannes, 2013, In: Biotechnology Progress. 29, 2, p. 553-563 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Effects of fertilization with urban and agricultural organic wastes in a field trial – Prokaryotic diversity investigated by pyrosequencing
Poulsen, P. H. B., Abu Al-Soud, W., Bergmark, L., Magid, Jakob, Hansen, Lars Hestbjerg & Sørensen, Søren Johannes, 2013, In: Soil Biology & Biochemistry. 57, p. 784-893 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Investigating the diversity of Pseudomonas spp. in soil using culture dependent and independent techniques
Li, L., Abu Al-Soud, W., Bergmark, L., Riber, Leise, Hansen, Lars Hestbjerg, Magid, Jakob & Sørensen, Søren Johannes, 2013, In: Current Microbiology. 67, 4, p. 423-430 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Investigation of the relationship between lactococcal host cell wall polysaccharide genotype and 936 phage receptor binding protein phylogeny
Mahony, J., Kot, Witold, Murphy, J., Ainsworth, S., Neve, H., Hansen, Lars Hestbjerg, Heller, K. J., Sørensen, Søren Johannes, Hammer, K., Cambillau, C., Vogensen, Finn Kvist & Sinderen, D. V., 2013, In: Applied and Environmental Microbiology. 79, 14, p. 4385-4392 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Microbial diversity and PAH catabolic genes tracking spatial heterogeneity of PAH concentrations
Bengtsson, G., Törneman, N., Lipthay, J. R. D. & Sørensen, Søren Johannes, 2013, In: Microbial Ecology. 65, 1, p. 91-100 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Simultaneous pyrosequencing of the 16S rRNA, IncP-1 trfA, and merA genes
Holmsgaard, P. N., Sørensen, Søren Johannes & Hansen, Lars Hestbjerg, 2013, In: Journal of Microbiological Methods. 95, 2, p. 280-284 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Specificity and stability of the Acromyrmex–Pseudonocardia symbiosis
Andersen, Sandra Breum, Hansen, Lars Hestbjerg, Sapountzis, P., Sørensen, Søren Johannes & Boomsma, Jacobus J., 2013, In: Molecular Ecology. 22, 16, p. 4307-4321 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The ability of soil bacteria to receive the conjugative IncP1 plasmid, pKJK10, is different in a mixed community compared to single strains
de la Cruz Perera, C. I., Ren, D., Blanchet, M., Dendooven, L., Marsch, R., Sørensen, Søren Johannes & Burmølle, Mette, 2013, In: F E M S Microbiology Letters. 338, 1, p. 95-100 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The impact of the conjugative IncP-1 plasmid pKJK5 on multispecies biofilm formation is dependent on the plasmid host
Røder, Henriette Lyng, Hansen, Lars Hestbjerg, Sørensen, Søren Johannes & Burmølle, Mette, 2013, In: F E M S Microbiology Letters. 344, 2, p. 186-192 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The murine lung microbiome in relation to the intestinal and vaginal bacterial communities
Barfod, K. K., Roggenbuck, M., Hansen, Lars Hestbjerg, Schjørring, S., Larsen, S. T., Sørensen, Søren Johannes & Krogfelt, K. A., 2013, In: B M C Microbiology. 13, 12 p., 303.Research output: Contribution to journal › Journal article › Research › peer-review
- 2012
- Published
454-sequencing reveals stochastic local reassembly and high disturbance tolerance within arbuscular mycorrhizal fungal communities
Lekberg, K. Y. M., Schnoor, T., Kjøller, Rasmus, Gibbons, S. M., Hansen, Lars Hestbjerg, Abu Al-Soud, W., Sørensen, Søren Johannes & Rosendahl, Søren, 2012, In: Journal of Ecology. 100, 1, p. 151-160 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
An invisible workforce: biofilms in the soil
Burmølle, Mette, Kjøller, Annelise Helene & Sørensen, Søren Johannes, 2012, Microbial biofilms: current research and applications. Lear, G. & Lewis, G. D. (eds.). Caister Academic Press, p. 61-71 11 p.Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
Assessment of the specificity of Burkholderia and Pseudomonas qPCR assays for detection of these genera in soil using 454 pyrosequencing
Bergmark, L., Poulsen, P. H. B., Abu Al-Soud, W., Norman, A., Hansen, Lars Hestbjerg & Sørensen, Søren Johannes, 2012, In: F E M S Microbiology Letters. 333, 1, p. 77-84 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Bacteria in the first void urine of urethritis patients and healthy controls analysed by 454 high throughput senquencing
Ahrens, P., Frølund, M., Abu Al-Soud, W., Wikström, A., Lidbrink, P., Cullberg, M., Sørensen, Søren Johannes & Jensen, J. S., 2012.Research output: Contribution to conference › Poster › Research
- Published
Biofilm growth and near infrared radiation-driven photosynthesis of the chlorophyll d-containing cyanobacterium Acaryochloris marina
Behrendt, L., Schrameyer, V., Qvortrup, Klaus, Neves Lundin, A. L., Sørensen, Søren Johannes, Larkum, A. W. D. & Kühl, Michael, 2012, In: Applied and Environmental Microbiology. 78, 11, p. 3896-3904 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Culture-dependent and -independent investigations of microbial diversity on urinary catheters
Xu, Y., Moser, Claus Ernst, Abu Al-Soud, W., Sørensen, Søren Johannes, Høiby, Niels, Nielsen, P. H. & Thomsen, T. R., 2012, In: Journal of Clinical Microbiology. 50, 12, p. 3901-3908 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
DGGE and Pyrosequencing characterization of microbial community and methane-metabolizing microorganisms in livestock slurry surface crusts
Duan, Y. (., Abu Al-Soud, W., Sørensen, Søren Johannes, Elsgaard, L., Petersen, S. O. & Boon, N., 2012.Research output: Contribution to conference › Poster › Research
- Published
- Published
Draft Genome Sequence of the Soil Bacterium Burkholderia terrae Strain BS001, Which Interacts with Fungal Surface Structures
Nazir, R., Hansen, M. A., Sørensen, Søren Johannes & van Elsas, J. D., 2012, In: Journal of Bacteriology. 194, 16, p. 4480-4481 2 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Early life treatment with vancomycin propagates Akkermansia muciniphila and reduces diabetes incidence in the NOD mouse
Hansen, Camilla Hartmann Friis, Krych, Lukasz, Nielsen, Dennis Sandris, Vogensen, Finn Kvist, Hansen, Lars Hestbjerg, Sørensen, Søren Johannes, Buschard, K. & Hansen, Axel Kornerup, 2012, In: Diabetologia. 55, 8, p. 2285-2294 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Ecology and photobiology of chlorophyll d-containing cyanobacteria
Kühl, Michael, Behrendt, L., Trampe, Erik, Sørensen, Søren Johannes, Chen, M., Qvortrup, K. & Larkum, A., 2012.Research output: Contribution to conference › Conference abstract for conference › Research
- Published
Ecology and photobiology of chlorophyll d-containing cyanobacteria
Kühl, Michael, Behrendt, L., Trampe, Erik, Sørensen, Søren Johannes, Chen, M., Qvortrup, Klaus & Larkum, A. W. D., 2012.Research output: Contribution to conference › Poster › Research
- Published
Gut microbiota composition is correlated to grid floor induced stress and behavior in the BALB/c mouse
Bendtsen, K. M. B., Krych, Lukasz, Sørensen, Dorte Bratbo, Pang, W., Nielsen, Dennis Sandris, Josefsen, K., Hansen, Lars Hestbjerg, Sørensen, Søren Johannes & Hansen, Axel Kornerup, 2012, In: P L o S One. 7, 10, 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Heterogeneity in recombinant protein production
Schalén, M., Johanson, T., Neves Lundin, A. L., Sørensen, Søren Johannes & Lantz, A. E., 2012, In: New Biotechnology. 29, Supplement, 0, p. S78 1 p.Research output: Contribution to journal › Conference abstract in journal › Research › peer-review
- Published
High robustness of soil bacteria and funghi to multifactorial climate change manipulations
Bergmark, L., Haugwitz-Hardenberg-Reventlow, M. S., Sørensen, Søren Johannes & Priemé, Anders, 2012.Research output: Contribution to conference › Conference abstract for conference › Research
- Published
Insight from the draft genome of Dietzia cinnamea P4 reveals mechanisms of survival in complex tropical soil habitats and biotechnology potential
Procópio, L., Alvarez, V. M., Jurelevicius, D. A., Hansen, Lars Hestbjerg, Sørensen, Søren Johannes, Cardoso, J. S., Pádula, M., Leitao, Á. C., Seldin, L. & van Elsas, J. D., 2012, In: Antonie van Leeuwenhoek: Journal of Microbiology. 101, 2, p. 289-302 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
- Published
Metamobilomics — expanding our knowledge on the pool of plasmid encoded traits in natural environments using high-throughput sequencing
Li, L., Norman, A., Hansen, Lars Hestbjerg & Sørensen, Søren Johannes, 2012, In: Clinical Microbiology and Infection. 18, Suppl. 4, p. 8-11 4 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Microbial diversity of biofilm communities in microniches associated with the didemnid ascidian Lissoclinum patella
Behrendt, L., Larkum, A. W. D., Trampe, Erik, Norman, A., Sørensen, Søren Johannes & Kühl, Michael, 2012, In: I S M E Journal. 6, p. 1222-1237 16 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Mining of unexplored habitats for novel chitinases - chiA as a helper gene proxy in metagenomics
Cretoiu, M. S., Kielak, A. M., Abu Al-Soud, W., Sørensen, Søren Johannes & van Elsas, J. D., 2012, In: Applied Microbiology and Biotechnology. 94, 5, p. 1347-1358 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Novel and conserved bacterial mercuric reductase genes (merA) and mercury resistance plasmids in High Arctic snow, freshwater and sea-ice brine
Kroer, Niels, Møller, A., Barkay, T., Hansen, M. A., Norman, A., Hansen, Lars Hestbjerg & Sørensen, Søren Johannes, 2012.Research output: Contribution to conference › Poster › Research
- Published
Permissiveness of soil microbial communities toward receipt of mobile genetic elements
Musovic, S., Klümper, U., Neves Lundin, A. L., Sørensen, Søren Johannes & Smets, B. F., 2012.Research output: Contribution to conference › Conference abstract for conference › Research
- Published
Physiological heterogeneities in microbial populations and implications for physical stress tolerance
Carlqvist, M., Lencastre Fernandes, R., Helmark, S., Heins, A., Neves Lundin, A. L., Sørensen, Søren Johannes, Gernaey, K. & Eliasson Lantz, A., 2012, In: Microbial Cell Factories. 11, 94, 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Profiling of the metabolically active community from a production-scale biogas plant by means of high-throughput metatranscriptome sequencing
Zakrzewski, M., Goesmann, A., Jaenicke, S., Jünemann, S., Eikmeyer, F., Szczepanowski, R., Abu Al-Soud, W., Sørensen, Søren Johannes, Pühler, A. & Schlüter, A., 2012, In: Journal of Biotechnology. 158, 4, p. 248-258 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Selection for Cu-tolerant bacterial communities with altered composition, but unaltered richness, via long-term Cu exposure
Berg, J., Brandt, Kristian Koefoed, Abu Al-Soud, W., Holm, Peter Engelund, Hansen, Lars Hestbjerg, Sørensen, Søren Johannes & Nybroe, O., 2012, In: Applied and Environmental Microbiology. 78, 20, p. 7438-7446 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Sequencing of IncX-plasmids suggests ubiquity of mobile forms of a biofilm-promoting gene cassette recruited from Klebsiella pneumoniae
Burmølle, Mette, Norman, A., Sørensen, Søren Johannes & Hansen, Lars Hestbjerg, 2012, In: PLOS ONE. 7, 7, 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The fate of indigenous microbiota, starter cultures, Escherichia coli, Listeria innocua and Staphylococcus aureus in Danish raw milk and cheeses determined by pyrosequencing and quantitative real time (qRT)-PCR
Masoud, W. M. H., Vogensen, Finn Kvist, Lillevang, S., Abu Al-Soud, W., Sørensen, Søren Johannes & Jakobsen, M., 2012, In: International Journal of Food Microbiology. 153, 1-2, p. 192-202 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The fate of mercury in Arctic terrestrial and aquatic ecosystems, a review
Douglas, T. A., Loseto, L. L., Macdonald, R. W., Outridge, P., Dommergue, A., Poulain, A., Amyot, M., Barkay, T., Berg, T., Chételat, J., Constant, P., Evans, M., Ferrari, C., Gantner, N., Johnson, M. S., Kirk, J., Kroer, N., Larose, C., Lean, D., Nielsen, T. G. & 7 others, , 2012, In: Environmental Chemistry (Online). 9, 4, p. 321-355 35 p.Research output: Contribution to journal › Review › Research › peer-review
- Published
The genome sequence of the lactic acid bacterium, Carnobacterium maltaromaticum ATCC 35586 encodes potential virulence factors
Leisner, Jørgen, Hansen, M. A., Larsen, M. H., Hansen, L., Ingmer, Hanne & Sørensen, Søren Johannes, 2012, In: International Journal of Food Microbiology. 152, 3, p. 107-115 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The interconnection between biofilm formation and horizontal gene transfer
Madsen, Jonas Stenløkke, Burmølle, Mette, Hansen, Lars Hestbjerg & Sørensen, Søren Johannes, 2012, In: F E M S Immunology and Medical Microbiology. 65, 2, p. 183-195 13 p.Research output: Contribution to journal › Review › Research › peer-review
- Published
When it makes sense to socialize whilst being on the move: A small EAL-domain containing protein, encoded on natural biofilm-promoting plasmids, triggers motility
Madsen, Jonas Stenløkke, Riber, Leise, Burmølle, Mette, Hansen, Lars Hestbjerg & Sørensen, Søren Johannes, 2012.Research output: Contribution to conference › Poster › Research
- 2011
- Published
Sequence and comparative analysis of Lactococcus lactis c2 dairy bacteriphages with different thermal inactivation
Vogensen, Finn Kvist, Nielsen, C. L. M., Bashir, A., Kot, Witold, Hansen, Lars Hestbjerg, Neve, H., Heller, K. J., Sørensen, Søren Johannes & Knoechel, Susanne, Aug 2011.Research output: Contribution to conference › Poster › Research
- Published
Bias in bacterial diversity as a result of Nycodenz extraction from bulk soil
Holmsgaard, P. N., Norman, A., Hede, S. C., Poulsen, P. H. B., Al-Soud, W. A., Hansen, Lars Hestbjerg & Sørensen, Søren Johannes, 14 Jul 2011, In: Soil Biology & Biochemistry. 43, 10, p. 2152-2159 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Applicability of GFP microbial whole cell biosensors to bioreactor operations: mathematical modeling and related experimental tools
Delvigne, F., Brognaux, A., Gorret, N., Sørensen, Søren Johannes, Michel, C. & Thonart, P., Jul 2011, Biosensors - Emerging Materials and Applications. Serra, P. A. (ed.). Rijeka, Croatia: InTech, p. 601-630 30 p.Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
Design and Synthesis of a Quintessential Self-Transmissible IncX1 Plasmid, pX1.0
Hansen, Lars Hestbjerg, Bentzon-Tilia, M., Bentzon-Tilia, S., Norman, A., Rafty, L. & Sørensen, Søren Johannes, May 2011, In: P L o S One. 6, 5, 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
- Published
Diversity and characterization of mercury-resistant bacteria in snow, freshwater and sea-ice brine from the High Arctic
Møller, A., Barkay, T., Abu Al-Soud, W., Sørensen, Søren Johannes, Skov, H. & Kroer, Niels, 1 Mar 2011, In: F E M S Microbiology Ecology. 75, 3, p. 390-401 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Extrachromosomal replicons:
Sørensen, Søren Johannes, 2011, Lewin's GENES X. Lewin, B., Krebs, J. E., Goldstein, E. S., Kilpatrick, S. T. & Goldstein, E. S. (eds.). 10th ed ed. Sudbury, Mass. : Jones and Bartlett Publishers, p. 282-298 16 p. (Jones and Bartlett books in computer science).Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Education
- Published
An Unexpected Location of the Arginine Catabolic Mobile Element (ACME) in a USA300-Related MRSA Strain
Bartels, Mette Damkjær, Hansen, Lars Hestbjerg, Boye, K., Sørensen, Søren Johannes & Westh, Henrik T., 2011, In: P L o S One. 6, 1, 5 p., e16193.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Biofilms in soil
Burmølle, Mette, Kjøller, Annelise Helene & Sørensen, Søren Johannes, 2011, Encyclopedia of agrophysics. Springer, p. 70-75 6 p. (Encyclopedia of Earth Sciences Series).Research output: Chapter in Book/Report/Conference proceeding › Encyclopedia chapter › Research › peer-review
- Published
Characterization of bacterial populations in Danish raw milk cheeses made with different starter cultures by denaturating gradient gel electrophoresis and pyrosequencing
Masoud, W. M. H., Takamiya, M. K. W., Vogensen, Finn Kvist, Lillevang, S., Abu Al-Soud, W., Sørensen, Søren Johannes & Jakobsen, M., 2011, In: International Dairy Journal. 21, 3, p. 142-148 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
- Published
Construction of biosensors to investigate physiological diversity in fermentation processes
Han, S., Lundin, L. & Sørensen, Søren Johannes, 2011.Research output: Contribution to conference › Poster › Research
- Published
Endolithic chlorophyll d-containing phototrophs
Behrendt, L., Larkum, A. W. D., Norman, A., Qvortrup, Klaus, Chen, M., Ralph, P., Sørensen, Søren Johannes, Trampe, Erik & Kühl, Michael, 2011, In: I S M E Journal. 5, 6, p. 1072-6 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Experimental methods and modeling techniques for description of cell population heterogeneity
Lencastre Fernandes, R., Nierychlo, M., Lundin, L., Pedersen, A. E., Tellez, P. E. P., Dutta, A., Carlquist, M., Bolic, A., Schäpper, D., Brunetti, A. C., Helmark, S., Heins, A-L., Jensen, A. D., Nopens, I., Rottwitt, K., Szita, N., Elsas, J. D. V., Nielsen, P. H., Martinussen, J., Sørensen, S. J. & 2 others, , 2011, In: Biotechnology Advances. 29, 6, p. 575-599 25 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Green fluorescent protein (GFP) leakage from microbial biosensors provides useful information for the evaluation of the scale-down effect
Delvigne, F., Brognaux, A., Francis, F., Twizere, J., Gorret, N., Sørensen, Søren Johannes & Thonart, P., 2011, In: Biotechnology Journal. 6, 8, p. 968-978 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Investigation of diversity of plasmids carrying the blaTEM-52 gene
Bielak, E. M., Bergenholtz, R. D., Jørgensen, M. S., Sørensen, Søren Johannes, Hansen, Lars Hestbjerg & Hasman, H., 2011, In: Journal of Antimicrobial Chemotherapy. 66, 11, p. 2465-74 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Limiting the occurrence of antimicrobial resistance through targeted interventions directed at plasmid transfer and stability
Riber, Leise, Charbon, G., Burmølle, Mette, Hansen, Lars Hestbjerg & Sørensen, Søren Johannes, 2011.Research output: Contribution to conference › Poster › Research › peer-review
- Published
Nitrogenase gene amplicons from global marine surface waters are dominated by genes of non-cyanobacteria
Farnelid, H., Andersson, A. F., Bertilsson, S., Abu Al-Soud, W., Hansen, Lars Hestbjerg, Sørensen, Søren Johannes, Steward, G. F., Hagström, Å. & Riemann, Lasse, 2011, In: P L o S One. 6, 4, p. e19223 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Predominant genera of fecal microbiota in children with atopic dermatitis are not altered by intake of probiotic bacteria Lactobacillus acidophilus NCFM and Bifidobacterium animalis subsp.lactis Bi-07
Larsen, Nadja, Vogensen, Finn Kvist, Gøbel, R. J., Michaelsen, Kim F., Abu Al-Soud, W., Sørensen, Søren Johannes, Hansen, Lars Hestbjerg & Jakobsen, M., 2011, In: FEMS Microbiology Ecology. 75, 3, p. 482-496 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Quantitative metagenomic analyses based on average genome size normalization
Frank, J. A. & Sørensen, Søren Johannes, 2011, In: Applied and Environmental Microbiology. 77, 7, p. 2513-2521 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Sequence and comparative analysis of Leuconostoc dairy bacteriophages
Kot, Witold, Hansen, Lars Hestbjerg, Neve, H., Hammer, K., Pedersen, P. D., Sørensen, Søren Johannes, Heller, K. J. & Vogensen, Finn Kvist, 2011. 1 p.Research output: Contribution to conference › Poster › Research
- Published
Sequence and comparative analysis of Leuconostoc dairy bacteriophages
Kot, Witold, Hansen, Lars Hestbjerg, Neve, H., Hammer, K., Sørensen, Søren Johannes, Heller, K. J. & Vogensen, Finn Kvist, 2011. 1 p.Research output: Contribution to conference › Conference abstract for conference › Research
- 2010
- Published
Bias in Nycodenz extraction from bulk soil analysed by amplicon high throughput sequencing
Holmsgaard, P. N., Poulsen, P., Hede, S., Abu Al-Soud, W., Hansen, Lars Hestbjerg & Sørensen, Søren Johannes, Nov 2010.Research output: Contribution to conference › Poster › Research
- Published
Diversity of cultural and uncultrural Pseudomonas in an Urban Waste Filed Trial
Li, L., Bergmark, L., Abu Al-Soud, W., Hansen, Lars Hestbjerg, Norman, A. & Sørensen, Søren Johannes, Nov 2010.Research output: Contribution to conference › Poster › Research
- Published
The effect of L. acidophilus NCFM intake on insulin sensitivity and gut microbiota: a randomized placebo-controlled trial
Larsen, Nadja, Andreasen, A. S., Pedersen-Skovsgaard, T., Møller, K., van den Berg, F. W. J., Abu Al-Soud, W. M. A. F., Sørensen, Søren Johannes, Hansen, Lars Hestbjerg, Nielsen, Dennis Sandris, Vogensen, Finn Kvist, Pedersen, Bente Klarlund & Jakobsen, M., Sep 2010.Research output: Contribution to conference › Conference abstract for conference › Research
- Published
- Published
Bias in Nycodenz extraction from bulk soil analysed by amplicon high throughput sequencing
Holmsgaard, P. N., Poulsen, P. H. B., Hede, S., Abu Al-Soud, W., Hansen, Lars Hestbjerg & Sørensen, Søren Johannes, Aug 2010.Research output: Contribution to conference › Poster › Research
- Published
Metamobilomics - Expanding the environmental mobilome with high throughput sequencing
Norman, A., Li, L., Hansen, Lars Hestbjerg & Sørensen, Søren Johannes, Aug 2010.Research output: Contribution to conference › Poster › Research
- Published
The Diversity of cultural and uncultrural Pseudomonas in an Urban Waste Field Trial
Li, L., Bergmark, L., Abu Al-Soud, W., Norman, A., Hansen, Lars Hestbjerg & Sørensen, Søren Johannes, Aug 2010.Research output: Contribution to conference › Poster › Research
- Published
Probing Barophilic Microbial Communities for Novel Proteolytic Enzymes
Frank, J. A., Hansen, M. A. & Sørensen, Søren Johannes, May 2010.Research output: Contribution to conference › Poster › Research
- Published
All equal, all different?
Han, S., Lundin, L. & Sørensen, Søren Johannes, 2010.Research output: Contribution to conference › Poster › Research
- Published
Biofilms in chronic infections - a matter of opportunity - monospecies biofilms in multispecies infections
Burmølle, Mette, Thomsen, T. R., Fazli, M., Dige, I., Christensen, L., Homøe, Preben, Tvede, M., Nyvad, B., Tolker-Nielsen, Tim, Givskov, Michael, Moser, Claus Ernst, Kirketerp-Møller, K., Johansen, Helle Krogh, Høiby, Niels, Jensen, Peter Østrup, Sørensen, Søren Johannes & Bjarnsholt, Thomas, 2010, In: FEMS Immunology and Medical Microbiology. 59, 3, p. 324-336 13 p.Research output: Contribution to journal › Review › Research › peer-review
- Published
Centre for Anti-resistance; Limiting the occurrence of antimicrobial resistance through targeted interventions directed at plasmid transfer and stability
Riber, Leise, Burmølle, Mette, Hansen, Lars Hestbjerg & Sørensen, Søren Johannes, 2010.Research output: Contribution to conference › Poster › Research
- Published
Gut microbiota in human adults with type 2 diabetes differs from non-diabetic adults
Larsen, Nadja, Vogensen, Finn Kvist, van der Berg, Franciscus Winfried J, Nielsen, Dennis Sandris, Andreasen, Anne Sofie, Pedersen, Bente Klarlund, Abu Al-Soud, W. M. A. F., Sørensen, Søren Johannes, Hansen, Lars Hestbjerg & Jakobsen, M., 2010, In: PLoS ONE. 5, 2, p. e9085 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
New ecological niches and habitats for Chlorophyll d- containing cyanobacteria
Behrendt, L., Chen, M., Larkum, A. W. D., Ralph, P. J., Sørensen, Søren Johannes, Trampe, E. & Kühl, Michael, 2010.Research output: Contribution to conference › Poster › Research
- Published
The gut microbiota in human adults with type 2 diabetes differs from non-diabetic adults
Nielsen, Dennis Sandris, Larsen, Nadja, Vogensen, Finn Kvist, van den Berg, F. W. J., Andreasen, A. S., Pedersen, B. K., Abu Al-Soud, W. M. A. F., Sørensen, Søren Johannes, Hansen, Lars Hestbjerg & Jakobsen, M., 2010. 1 p.Research output: Contribution to conference › Conference abstract for conference › Research
- Published
The lactic acid bacterium, Carnobacterium maltaromaticum possess a diverse range of potential virulence genes some of which are related to similar genes in Listeria monocytogenes
Leisner, Jørgen, Hansen, M. A., Larsen, M. H., Ingmer, Hanne, Hansen, Lars Hestbjerg & Sørensen, Søren Johannes, 2010.Research output: Contribution to conference › Poster › Research
- Published
The nitrogenase gene pool in surface waters of the global ocean is dominated by genes of non-cyanobacteria
Farnelid, H., Andersson, A., Bertilsson, S., Abu Al-Soud, W., Hansen, Lars Hestbjerg, Sørensen, Søren Johannes, Hagström & Riemann, Lasse, 2010.Research output: Contribution to conference › Poster › Research
- 2009
- Published
All IncP-1 plasmid subgroups, including the novel e subgroup, are prevalent in the influent of a Danish wastewater treatment plant
Bahl, M. I., Burmølle, Mette, Meisner, A., Hansen, Lars Hestbjerg & Sørensen, Søren Johannes, 2009, In: Plasmid. 62, 2, p. 134-139 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Conjugative plasmids: Vessels of the communal gene pool
Norman, A., Hansen, Lars Hestbjerg & Sørensen, Søren Johannes, 2009, In: Philosophical Transactions of the Royal Society of London. Biological Sciences. 364, 1527, p. 2275-2289 15 p.Research output: Contribution to journal › Review › Research › peer-review
- Published
Construction and Use of Flow Cytometry Optimized Plasmid-Sensor Strains: Genomes in Flux
Bahl, M. I., Oregaard, G., Sørensen, Søren Johannes & Hansen, Lars Hestbjerg, 2009, Horizontal Gene Transfer. Gogarten, M. B., Gogarten, J. P. & Olendzenski, L. C. (eds.). Humana Press, Vol. 532. p. 257-268 (Methods in Molecular Biology).Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research
- Published
Investigation of prokaryotic diversity in an urban waste field trial by high throughput sequencing
Poulsen, P. H. B., Abu Al-Soud, W., Hansen, Lars Hestbjerg, Magid, Jakob & Sørensen, Søren Johannes, 2009. 1 p.Research output: Contribution to conference › Poster › Research
- Published
Investigation of prokaryotic diversity in an urban waste field trial by high throughput sequencing
Poulsen, P. H. B., Abu Al-Soud, W., Hansen, Lars Hestbjerg & Sørensen, Søren Johannes, 2009. 1 p.Research output: Contribution to conference › Conference abstract for conference › Research
- Published
Persistence Mechanisms of Conjugative Plasmids
Bahl, M. I., Hansen, Lars Hestbjerg & Sørensen, Søren Johannes, 2009, Horizontal Gene Transfer: Genomes in Flux. Gogarten, M. B., Gogarten, J. P. & Olendzenski, L. C. (eds.). Humana Press, Vol. 532. p. 73-102 (Methods in Molecular Biology).Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research
- Published
The presence of embedded bacterial pure cultures in agar plates stimulate the culturability of soil bacteria.
Burmølle, Mette, Johnsen, K., Abu Al-Soud, W. M. A. F., Hansen, Lars Hestbjerg & Sørensen, Søren Johannes, 2009, In: Journal of Microbiological Methods. 79, 2, p. 166-173 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2008
- Published
Acclimation of subsurface microbial communities to mercury
de Lipthay, J. R., Rasmussen, L. D., Øregaard, G., Simonsen, K., Bahl, M. I., Kroer, Niels & Sørensen, Søren Johannes, 2008, In: FEMS Microbiology Ecology. 65, 1, p. 145-55 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Characterisation, dissemination and persistence of gentamicin resistant Escherichia coli from a Danish university hospital to the waste water environment
Jakobsen, L., Sandvang, D., Hansen, Lars Hestbjerg, Bagger-Skjøt, L., Westh, Henrik T., Jørgensen, C., Hansen, D. S., Pedersen, B. M., Monnet, D. L., Frimodt-Møller, N., Sørensen, Søren Johannes & Hammerum, A. M., 2008, In: Environment International. 34, 1, p. 108-15 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Cultivation of hard-to-culture subsurface mercury-resistant bacteria and discovery of new merA gene sequences
Rasmussen, L. D., Zawadsky, C., Binnerup, S. J., Øregaard, G., Sørensen, Søren Johannes & Kroer, Niels, 2008, In: Applied and Environmental Microbiology. 74, 12, p. 3795-803 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Nucleotide sequence of pOLA52: a conjugative IncX1 plasmid from Escherichia coli which enables biofilm formation and multidrug efflux
Norman, A., Hansen, Lars Hestbjerg, She, Q. & Sørensen, Søren Johannes, 2008, In: Plasmid. 60, 1, p. 59-74 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Type 3 fimbriae, encoded by the conjugative plasmid pOLA52, enhance biofilm formation and transfer frequencies in Enterobacteriaceae strains
Burmølle, Mette, Bahl, M. I., Jensen, L. B., Sørensen, Søren Johannes & Hansen, Lars Hestbjerg, 2008, In: Microbiology. 154, Pt 1, p. 187-95 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2007
- Published
Conjugative transfer facilitates stable maintenance of IncP-1 plasmid pKJK5 in Escherichia coli cells colonizing the gastrointestinal tract of the germfree rat
Bahl, M. I., Hansen, Lars Hestbjerg, Licht, T. & Sørensen, Søren Johannes, 2007, In: Applied and Environmental Microbiology. 73, 1, p. 341-343Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Establishment and early succession of a multispecies biofilm composed of soil bacteria
Burmølle, Mette, Hansen, Lars Hestbjerg & Sørensen, Søren Johannes, 2007, In: Microbial Ecology. 54, 2, p. 352-62 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Impact of conjugal transfer on the stability of IncP-1 plasmid pKJK5 in bacterial populations
Bahl, M. I., Hansen, Lars Hestbjerg & Sørensen, Søren Johannes, 2007, In: FEMS Microbiology Letters. 266, p. 250-256Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Substrate specificity of the OqxAB multidrug resistance pump in Escherichia coli and selected enteric bacteria
Hansen, Lars Hestbjerg, Jensen, L. B., Sørensen, H. I. & Sørensen, Søren Johannes, 2007, In: Journal of Antimicrobial Chemotherapy. 60, 1, p. 145-147Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The cda GenoTox assay: A new sensitive method for detection of environmental genotoxins, including nitroarenes and aromatic amines
Østergaard, T. G., Hansen, Lars Hestbjerg, Binderup, M., Norman, A. & Sørensen, Søren Johannes, 2007, In: Mutation Research - Reviews. 631, 2, p. 77-84Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The multiple antibiotic resistance IncP-1 plasmid pKJK5 isolated from a soil environment is phylogenetically divergent from members of the previously established a, ß and d sub-groups
Bahl, M. I., Hansen, Lars Hestbjerg, Goesmann, A. & Sørensen, Søren Johannes, 2007, In: Plasmid. 58, 1, p. 31-43Research output: Contribution to journal › Journal article › Research › peer-review
- 2006
- Published
A flow cytometry-optimized assay using an SOS-green fluorescent protein (SOS-GFP) whole-cell biosensor for the detection of genotoxins in complex environments
Norman, A., Hansen, Lars Hestbjerg & Sørensen, Søren Johannes, 2006, In: Mutation Research - Reviews. 603, 2, p. 164-172 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Biodegradation, bioaccessibility and genotoxicity of diffuse polycyclic aromatic hydrocarbon (PAH) pollution at a motorway site
Johnson, A. R., Lipthay, J. R. D., Reichenberg, F., Sørensen, Søren Johannes, Andersen, O., Christensen, P., Binderup, M. & Jacobsen, C. S., 2006, In: Environmental Science & Technology (Washington). 40, 10, p. 3293-3298Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Biosensors to Monitor Soil Health or Toxicity
Poulsen, P. H., Hansen, Lars Hestbjerg & Sørensen, Søren Johannes, 2006, Modern Soil Microbiology. van Elsas, J. D., Jansson, J. K. & Trevors, J. T. (eds.). 2nd ed. Boca Raton, FL: CRC Press, p. 435-454Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research
- Published
Cultivation-independent examination of horizontal transfer and host range of an IncP-1 plasmid among gram-positive and gram-negative bacteria indigenous to the barley rhizosphere
Musovic, S., Oregaard, G., Kroer, Niels & Sørensen, Søren Johannes, 2006, In: Applied and Environmental Microbiology. 72, 10, p. 6687-6692 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Determination of the genetic background for resistance to olaquindox, a Gram-negative growth promoter
Hansen, Lars Hestbjerg, Sørensen, Søren Johannes & Jensen, L. B., 2006, In: DANMAP 2005 - July 2006. p. 100-100 1 p.Research output: Contribution to journal › Journal article › Research
- Published
Enhanced Biofilm Formation and Increased Resistance to Antimicrobial Agents and Bacterial Invasion Are Caused by Synergistic Interactions in Multispecies Biofilms
Burmølle, Mette, Webb, J. S., Rao, D., Hansen, Lars Hestbjerg, Sørensen, Søren Johannes & Kjelleberg, S., 2006, In: Applied and Environmental Microbiology. 72, 6, p. 3916-3923Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Making bio-sense of toxicity: new developments in whole-cell biosencors
Sørensen, Søren Johannes, Burmølle, Mette & Hansen, Lars Hestbjerg, 2006, In: Current Opinion in Biotechnology. 17, 1, p. 11-16Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Microbial degradation of street dust polycyclic aromatic hydrocarbons in microcosms simulating diffuse pollution of urban soil.
Johnsen, A. R., de Lipthay, J. R., Sørensen, Søren Johannes, Ekelund, Flemming, Christensen, P., Andersen, O., Karlson, U. & Jacobsen, C. S., 2006, In: Environmental Microbiology. 8, 3, p. 535-45 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Mineralisation of 2,6-dichlorobenzamide (BAM) in dichlobenil-exposed soils and isolation of a BAM-mineralising Aminobacter sp.
Simonsen, A., Holtze, M. S., Sørensen, S. R., Sørensen, Søren Johannes & Aamund, J., 2006, In: Environmental Pollution. 144, 1, p. 289-295Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Reporter Geneechnology in Soil Ecology; Detection of Bioavailability and Microbial Interactions
Burmølle, Mette, Hansen, Lars Hestbjerg & Sørensen, Søren Johannes, 2006, Nucleic Acids and Proteins in Soil. Tyskland: Springer, p. 397-419Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research
- 2005
- Published
Construction of a ColD cda Promoter-Based SOS-Green Fluorescent Protein Whole-Cell Biosensor with Higher Sensitivity toward Genotoxic Compounds than Constructs Based on recA, umuDC, or sulA Promoters
Norman, A., Hansen, Lars Hestbjerg & Sørensen, Søren Johannes, 2005, In: Applied and Environmental Microbiology. 71, 5, p. 2338-2346Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Construction of an extended range whole-cell tetracycline biosensor by use of the tet(M) resistance gene
Bahl, M. I., Hansen, Lars Hestbjerg & Sørensen, Søren Johannes, 2005, In: FEMS Microbiology Letters. 253, 2, p. 201-205Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Monitoring and evaluating soil quality
Bloem, J., Schouten, A. J., Sørensen, Søren Johannes, Rutgers, M., van der Werf, A. & Breuer, A. M., 2005, Microbiological methods for assessing soil quality. p. .Research output: Chapter in Book/Report/Conference proceeding › Report chapter › Research
- Published
Studying plasmid horizontal transfer in situ: a critical review
Sørensen, Søren Johannes, Bailey, M., Hansen, Lars Hestbjerg, Kroer, Niels & Wuertz, S., 2005, In: Nature Reviews. Microbiology. 3, 9, p. 700-710Research output: Contribution to journal › Review › Research
- Published
The Prevalence of the OqxAB Multidrug Efflux Pump amongst Olaquindox-Resistant Escherichia coli in Pigs
Hansen, Lars Hestbjerg, Sørensen, Søren Johannes, Jørgensen, H. S. & Jensen, L. B., 2005, In: Microbial Drug Resistance. 11, 4, p. 378-382Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Use of a Whole-Cell Biosensor and Flow Cytometry to Detect AHL Production by an Indigenous Soil Community During Decomposition
Burmølle, Mette, Hansen, Lars Hestbjerg & Sørensen, Søren Johannes, 2005, In: Microbial Ecology. 50, 2, p. 221-229Research output: Contribution to journal › Journal article › Research › peer-review
- 2004
- Published
In Vivo Detection and Quantification of Tetracycline by Use of a Whole-Cell Biosensor in the Rat Intestine
Bahl, M. I., Hansen, Lars Hestbjerg, Licht, T. R. & Sørensen, Søren Johannes, 2004, In: Antimicrobial Agents and Chemotherapy. 48, 4, p. 1112-1117Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Application of whole-cell biosensors in soil
Sørensen, Søren Johannes, Hansen, Lars Hestbjerg, Burmølle, Mette, Oregaard, G. & Hermansen, P., 2004, Molecular Microbial Ecology Manual. Kowalchuk, G. A., de Bruijn, F. J., Head, I. M., Akkermans, A. D. L. & van Elsas, J. D. (eds.). 2. ed ed. Kluwer Academic Publishers, p. 1613-1628 8.03Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research
- Published
Effect of Tetracycline on Transfer and Establishment of the Tetracycline-Inducible Conjugative Transposon Tn916 in the Guts of Gnotobiotic Rats
Bahl, M. I., Sørensen, Søren Johannes, Hansen, Lars Hestbjerg & Licht, T. R., 2004, In: Applied and Environmental Microbiology. 70, 2, p. 758-764Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Impact of dna extraction method on bacterial community composition measured by denaturing gradient gel electrophoresis
Lipthay, J. R. D., Enzinger, C., Johnsen, K., Aamand, J. & Sørensen, Søren Johannes, 2004, In: Soil Biology & Biochemistry. 36, p. 1607-1614Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Plasmid Encoded Multidrug Efflux Pump Conferring Resistance to Olaquindox in Escherichia coli
Hansen, Lars Hestbjerg, Johannesen, E., Burmølle, Mette, Sørensen, A. H. & Sørensen, Søren Johannes, 2004, In: Antimicrobial Agents and Chemotherapy. 48, 9, p. 3332-3337Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Plasmid transfer in aquatic environments. Molecular Microbial Ecology Manual
Sørensen, Søren Johannes (ed.), Øregaard, G. (ed.), De Lipthay, J. R. (ed.) & Kroer, Niels (ed.), 2004, The Netherlands: Kluwer Academic Publishers.Research output: Book/Report › Book › Research
- Published
Quantification of plasmid loss in Escherichia coli cells by use of flow cytometry
Bahl, M. I., Sørensen, Søren Johannes & Hansen, Lars Hestbjerg, 2004, In: FEMS Microbiology Letters. 232, 1, p. 45-49Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Recovery of GFP-labeled bacteria for culturing and molecular analysis after cell sorting using a benchtop flow cytometer
Ferrari, B. C., Øregaard, G. & Sørensen, Søren Johannes, 2004, In: Microbial Ecology. 48, p. 239-245Research output: Contribution to journal › Journal article › Research › peer-review
- Published
- 2003
- Published
In vivo detection and quantification of tetracycline by use of a whole-cell biosensor in the intestine of rats
Bahl, M. I., Hansen, L. H., Licht, T. R. & Sørensen, Søren Johannes, 2003, In: Antimicrobial Agents and Chemotherapy. ., p. .Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Conjugative Plasmid Conferring Resistance to Olaquindox
Sørensen, A. H., Hansen, Lars Hestbjerg, Johannesen, E. & Sørensen, Søren Johannes, 2003, In: Antimicrobial agents and Chemotheraphy. 47, 2, p. 798-799 2 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Direct Detection and Quantification of Horizontal Gene Transfer Using Flow Cytometry and gfp as a Reporter Gene
Sørensen, Søren Johannes, Sørensen, A. H., Hansen, Lars Hestbjerg, Oregaard, G. & Veal, D., 2003, In: Current Microbiology. 47, 2, p. 129-133 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Effect of tetracycline on transfer and establishment of the tetracycline-inducible conjugative transposon Tn916 in the gut of gnotobiotic rats
Bahl, M. I., Sørensen, Søren Johannes, Hansen, L. H. & Licht, T. R., 2003, In: Applied and Environmental Microbiology. ., p. .Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Presence of N-acyl Homoserine Lactones in Soil Detected by a Whole-Cell Biosensor and Flow Cytometry
Burmølle, Mette, Hansen, Lars Hestbjerg, Oregaard, G. & Sørensen, Søren Johannes, 2003, In: Microbial Ecology. 45, 3, p. 226-236 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The mycorrhizal fungus (Glomus intraradices) affects microbial activity in the rhizosphere of pea plants (Pisum sativum)
Wamberg, C., Christensen, Søren, Jakobsen, I., Müller, A. K. & Sørensen, Søren Johannes, 2003, In: Soil Biology & Biochemistry. Vol. 35, issue 10, p. 1349-1357Research output: Contribution to journal › Journal article › Research › peer-review
- 2002
- Published
Inducible Gene Expression by non-culturable bacteria in milk after pasterurization
Gunasekera, T. S., Atfield, A. H., Sørensen, Søren Johannes & Veal, D., 2002, In: Applied and Environmental Microbiology. 68(4), p. 1988-1994Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Molecular methods for assessing and manipulating the diversity of microbial populations and processes
Sørensen, Søren Johannes, de Lipthay, J. R., Müller, A. K., Barkay, T., Hansen, Lars Hestbjerg & Rasmussen, L. D., 2002, Enzymes in the Environment: Activity, Ecology, and Applications. Burns, R. G. & Dick, R. P. (eds.). Marcel Dekker, 363 p. (Books in soils, plants, and the environment).Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
Quantification of bioavailable chlortetracycline in pig feces using a bacterial whole-cell biosensor
Hansen, Lars Hestbjerg, Aarestrup, F. & Sørensen, Søren Johannes, 2002, In: Veterinary Microbiology. 87, 1, p. 51-57Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The diversity, structure and function of soil microbial communities exposed to different disturbances
Müller, A. K., Westergaard, K., Christensen, S. & Sørensen, Søren Johannes, 2002, In: Microbial Ecology. 44, p. 49-58Research output: Contribution to journal › Journal article › Research › peer-review
- 2001
- Published
Adaptation of the bacterial community to heavy metal contamination
Müller, A. K., Rasmussen, L. D. & Sørensen, Søren Johannes, 2001, In: FEMS Microbiology Letters. 205, p. 49-53Research output: Contribution to journal › Journal article › Research
- Published
An examination of the biodiversity-ecosystem function relationship in arable soil microbial communities
Griffiths, B. S., Ritz, K., Wheatley, R., Kuan, H. L., Boag, B., Christensen, Søren, Ekelund, Flemming, Sørensen, Søren Johannes, Muller, S. & Bloem, J., 2001, In: Soil Biology & Biochemistry. 33, 12-13, p. 1713-1722Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Detection of Oxytetracycline production by Streptomyces rimosus in soil microcosms by combining whole-cell biosensors and flow cytometry
Hansen, Lars Hestbjerg, Ferrari, B., Sørensen, A. H., Veal, D. & Sørensen, Søren Johannes, 2001, In: Applied and Environmental Microbiology. 67, 1, p. 239-244Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Effect of genomic location on horizontal transfer of a recombinant gene cassette between Pseudomonas strains in the rhizosphere and spermosphere of barley seedlings
Sengeløv, G., Kristensen, K. J., Sørensen, A. M. H., Kroer, Niels & Sørensen, Søren Johannes, 2001, In: Current Microbiology. 42, p. 160-167Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Effects of mercury contimanation on the culturable heterotrophic, functional and genetic diversity of the bacterial community in soil
Rasmussen, L. D. & Sørensen, Søren Johannes, 2001, In: FEMS Microbiology Ecology. 36, p. 1-9Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Enhanced degradation of phenoxyacetic acid in soil by horizontal transfer of the tfdA gene encoding a 2,4-dichlorophenoxyacetic acid dioxygenase
Lipthay, J. R. D., Barkay, T. & Sørensen, Søren Johannes, 2001, In: FEMS Microbiology Ecology. 35, p. 75-84Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Group-specific PCR primers to amplify 24S α-subunit rRNA genes from Kinetoplastida (Protozoa) used in denaturing gradient gel electrophoresis
Rasmussen, L. D., Ekelund, Flemming, Hansen, Lars Hestbjerg, Sørensen, Søren Johannes & Johnsen, K., 2001, In: Microbial Ecology. 42, 2, p. 109-115Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The Effect of Long Term Mercury Pollution on the Soil Microbial Community
Müller, A. K., Westergaard, K., Christensen, Søren & Sørensen, Søren Johannes, 2001, In: FEMS Microbiology Ecology. 36, 1, p. 11-19Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The use of whole-cell biosensors to detect and quantify compounds or conditions affecting biological systems
Hansen, Lars Hestbjerg & Sørensen, Søren Johannes, 2001, In: Microbial Ecology. 42, 4, p. 483-494Research output: Contribution to journal › Journal article › Research › peer-review
- 2000
- Published
A new method for determining the metabolic activity of specific bacterial populations in soil using tritiated leucine and immunomagnetic separation
Sengeløv, G., Sørensen, Søren Johannes, Frette, L. & Kroer, Niels, 2000, In: Biology and Fertility of Soils. 32, 3, p. 202-208Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Application of a mer-lux biosensor for estimating bioavailable mercury in soil
Rasmussen, L. D., Sørensen, Søren Johannes, Turner, R. R. & Barkay, T., 2000, In: Soil Biology & Biochemistry. 32, 5, p. 639-646Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Detection and quantification of tetracyclines by whole cell biosensors
Hansen, Lars Hestbjerg & Sørensen, Søren Johannes, 2000, In: FEMS Microbiology Letters. 190, 2, p. 273-278Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Ecosystem response of pasture soil communities to fumigation-induced microbial diversity reductions: an examination of the biodiversity-ecosystem function relationship
Griffiths, B. S., Ritz, K., Bardgett, R. D., Cook, R., Christensen, Søren, Ekelund, Flemming, Sørensen, Søren Johannes, Bååth, E., Bloem, J., De Ruiter, P. C., Dolfing, J. & Nicolardot, B., 2000, In: Oikos. 90, 2, p. 279-294Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Influence of fungal-bacterial interactions on bacterial conjugation in the residuesphere
Sengeløv, G., Kowalchuk, G. A. & Sørensen, Søren Johannes, 2000, In: FEMS Microbiology Ecology. 31, p. 39-45Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Versatile biosensor vectors for detection and quantification of mercury
Hansen, Lars Hestbjerg & Sørensen, Søren Johannes, 2000, In: FEMS Microbiology Letters. 193, 1, p. 123-127Research output: Contribution to journal › Journal article › Research › peer-review
- 1999
- Published
Predation by protozoa on Escherichia coli K12 in soil and transfer of resistance plasmid RP4 to indigenous bacteria in soil
Sørensen, Søren Johannes, Schyberg, T. & Rønn, Regin, 1999, In: Appl. Soil Ecol.. 11, p. 79-90Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Utilization of phenoxyacetic acid, by strains using either the ortho- or meta-cleavage of catechol during phenol degradation, after conjugal transfer of tfdA, the gene encoding 2,4-dichlorophenoxyacetid acid/alfa-ketoglutarate dioxygn
de Lipthay, J. R., Barkay, T., Vekova, J. & Sørensen, Søren Johannes, 1999, In: Appl. Microbiol. Biotech.. 51, p. 207-214Research output: Contribution to journal › Journal article › Research › peer-review
- 1998
- Published
Effect of root exudates and bacterial metabolic activity on conjugal gene transfer in the rhizosphere of a marsch plant
Kroer, Niels, Barkay, T., Sørensen, Søren Johannes & Weber, D., 1998, In: FEMS Microbiology Ecology. 25, p. 375-384Research output: Contribution to journal › Journal article › Research
- Published
Effect of root exudates and bacterial metabolic activity on conjugal gene transfer in the rhizosphere of a marsh plant
Kroer, Niels, Barkay, T., Sørensen, Søren Johannes & Weber, D., 1998, In: FEMS Microbiology Ecology. 25, 4, p. 375-384 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Methods for detection of conjugative plasmid transfer in aquatic environments
Sengeløv, G. & Sørensen, Søren Johannes, 1998, In: Current Microbiology. 37, p. 274-280Research output: Contribution to journal › Journal article › Research
- Published
The effect of longterm exposure to mercury on the bacterial community in marine sediment
Rasmussen, L. D. & Sørensen, Søren Johannes, 1998, In: Current Microbiology. 36, p. 291-297Research output: Contribution to journal › Journal article › Research
- Published
The effect of the lacY gene on the induction of IPTG inducible promoters, studied in Escherichia coli and Pseudomonas fluorescens
Hansen, Lars Hestbjerg, Knudsen, S. & Sørensen, Søren Johannes, 1998, In: Current Microbiology. 36, 6, p. 341-347Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Transfer of plasmid RP4 in the spermosphere and rhizosphere of barley seedling
Sørensen, Søren Johannes & Jensen, L., 1998, In: Antonie van Leeuwenhoek. International Journal of General and Molecular Microbiology. 73, p. 69-77Research output: Contribution to journal › Journal article › Research
- 1997
- Published
Chromosomal insertion of the entire Escherichia coli lactose operon, into two strains of Pseudomonas, using a modified mini-Tn5 delivery system
Hansen, Lars Hestbjerg, Sørensen, Søren Johannes & Jensen, L. B., 1997, In: Gene. 186, 2, p. 167-173Research output: Contribution to journal › Journal article › Research › peer-review
- 1992
- Published
Mobilization of non-conjugative plasmids, pBR322-derivatives from laboratory strains of escherichia coli to indigenous bacteria isolated from seawater
Sørensen, Søren Johannes, 1992, In: Microbial Releases. 1, p. 17-22Research output: Contribution to journal › Journal article › Research
- Published
Plasmid transfer of pBR322 derivatives from reeA E.coli K12 donor strain to various natural gram-negative isolates
Sørensen, Søren Johannes, 1992, The Release of Genetically Modified Microorganisms. New York: Plenum Publishing Corporation, p. 197-198Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research
- 1991
- Published
Survival of Escherichia coli K12 in seawater
Sørensen, Søren Johannes, 1991, In: FEMS Microbiology Ecology. 85, p. 161-168Research output: Contribution to journal › Journal article › Research
ID: 4269
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Gut microbiota in human adults with type 2 diabetes differs from non-diabetic adults
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Sequence and comparative analysis of Leuconostoc dairy bacteriophages
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Complete genome sequence of the cystic fibrosis pathogen Achromobacter xylosoxidans NH44784-1996 complies with important pathogenic phenotypes
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