Complete genome sequence of "Thiodictyon syntrophicum" sp. nov. strain Cad16T, a photolithoautotrophic purple sulfur bacterium isolated from the alpine meromictic Lake Cadagno

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Standard

Complete genome sequence of "Thiodictyon syntrophicum" sp. nov. strain Cad16T, a photolithoautotrophic purple sulfur bacterium isolated from the alpine meromictic Lake Cadagno. / Luedin, Samuel M.; Pothier, Joël F.; Danza, Francesco; Storelli, Nicola; Frigaard, Niels-Ulrik; Wittwer, Matthias; Tonolla, Mauro.

I: Standards in Genomic Sciences, Bind 13, 14, 09.05.2018.

Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › fagfællebedømt

Harvard

Luedin, SM, Pothier, JF, Danza, F, Storelli, N, Frigaard, N-U, Wittwer, M & Tonolla, M 2018, 'Complete genome sequence of "Thiodictyon syntrophicum" sp. nov. strain Cad16T, a photolithoautotrophic purple sulfur bacterium isolated from the alpine meromictic Lake Cadagno', Standards in Genomic Sciences, bind 13, 14. https://doi.org/10.1186/s40793-018-0317-z

APA

Luedin, S. M., Pothier, J. F., Danza, F., Storelli, N., Frigaard, N-U., Wittwer, M., & Tonolla, M. (2018). Complete genome sequence of "Thiodictyon syntrophicum" sp. nov. strain Cad16T, a photolithoautotrophic purple sulfur bacterium isolated from the alpine meromictic Lake Cadagno. Standards in Genomic Sciences, 13, [14]. https://doi.org/10.1186/s40793-018-0317-z

Vancouver

Luedin SM, Pothier JF, Danza F, Storelli N, Frigaard N-U, Wittwer M o.a. Complete genome sequence of "Thiodictyon syntrophicum" sp. nov. strain Cad16T, a photolithoautotrophic purple sulfur bacterium isolated from the alpine meromictic Lake Cadagno. Standards in Genomic Sciences. 2018 maj 9;13. 14. https://doi.org/10.1186/s40793-018-0317-z

Author

Luedin, Samuel M. ; Pothier, Joël F. ; Danza, Francesco ; Storelli, Nicola ; Frigaard, Niels-Ulrik ; Wittwer, Matthias ; Tonolla, Mauro. / Complete genome sequence of "Thiodictyon syntrophicum" sp. nov. strain Cad16T, a photolithoautotrophic purple sulfur bacterium isolated from the alpine meromictic Lake Cadagno. I: Standards in Genomic Sciences. 2018 ; Bind 13.

Bibtex

@article{3e9d61af636a42c098bd484f6711d4f7,
title = "Complete genome sequence of {"}Thiodictyon syntrophicum{"} sp. nov. strain Cad16T, a photolithoautotrophic purple sulfur bacterium isolated from the alpine meromictic Lake Cadagno",
abstract = "{"}Thiodictyon syntrophicum{"} sp. nov. strain Cad16T is a photoautotrophic purple sulfur bacterium belonging to the family of Chromatiaceae in the class of Gammaproteobacteria. The type strain Cad16T was isolated from the chemocline of the alpine meromictic Lake Cadagno in Switzerland. Strain Cad16T represents a key species within this sulfur-driven bacterial ecosystem with respect to carbon fixation. The 7.74-Mbp genome of strain Cad16T has been sequenced and annotated. It encodes 6237 predicted protein sequences and 59 RNA sequences. Phylogenetic comparison based on 16S rRNA revealed that Thiodictyon elegans strain DSM 232T the most closely related species. Genes involved in sulfur oxidation, central carbon metabolism and transmembrane transport were found. Noteworthy, clusters of genes encoding the photosynthetic machinery and pigment biosynthesis are found on the 0.48 Mb plasmid pTs485. We provide a detailed insight into the Cad16T genome and analyze it in the context of the microbial ecosystem of Lake Cadagno.",
keywords = "Chromatiaceae, CRISPR, Meromictic lake, Okenone, Phototrophic sulfur bacteria, Sulfur cycling",
author = "Luedin, {Samuel M.} and Pothier, {Jo{\"e}l F.} and Francesco Danza and Nicola Storelli and Niels-Ulrik Frigaard and Matthias Wittwer and Mauro Tonolla",
year = "2018",
month = may,
day = "9",
doi = "10.1186/s40793-018-0317-z",
language = "English",
volume = "13",
journal = "Standards in Genomic Sciences",
issn = "1944-3277",
publisher = "BioMed Central Ltd.",

}

RIS

TY - JOUR

T1 - Complete genome sequence of "Thiodictyon syntrophicum" sp. nov. strain Cad16T, a photolithoautotrophic purple sulfur bacterium isolated from the alpine meromictic Lake Cadagno

AU - Luedin, Samuel M.

AU - Pothier, Joël F.

AU - Danza, Francesco

AU - Storelli, Nicola

AU - Frigaard, Niels-Ulrik

AU - Wittwer, Matthias

AU - Tonolla, Mauro

PY - 2018/5/9

Y1 - 2018/5/9

N2 - "Thiodictyon syntrophicum" sp. nov. strain Cad16T is a photoautotrophic purple sulfur bacterium belonging to the family of Chromatiaceae in the class of Gammaproteobacteria. The type strain Cad16T was isolated from the chemocline of the alpine meromictic Lake Cadagno in Switzerland. Strain Cad16T represents a key species within this sulfur-driven bacterial ecosystem with respect to carbon fixation. The 7.74-Mbp genome of strain Cad16T has been sequenced and annotated. It encodes 6237 predicted protein sequences and 59 RNA sequences. Phylogenetic comparison based on 16S rRNA revealed that Thiodictyon elegans strain DSM 232T the most closely related species. Genes involved in sulfur oxidation, central carbon metabolism and transmembrane transport were found. Noteworthy, clusters of genes encoding the photosynthetic machinery and pigment biosynthesis are found on the 0.48 Mb plasmid pTs485. We provide a detailed insight into the Cad16T genome and analyze it in the context of the microbial ecosystem of Lake Cadagno.

AB - "Thiodictyon syntrophicum" sp. nov. strain Cad16T is a photoautotrophic purple sulfur bacterium belonging to the family of Chromatiaceae in the class of Gammaproteobacteria. The type strain Cad16T was isolated from the chemocline of the alpine meromictic Lake Cadagno in Switzerland. Strain Cad16T represents a key species within this sulfur-driven bacterial ecosystem with respect to carbon fixation. The 7.74-Mbp genome of strain Cad16T has been sequenced and annotated. It encodes 6237 predicted protein sequences and 59 RNA sequences. Phylogenetic comparison based on 16S rRNA revealed that Thiodictyon elegans strain DSM 232T the most closely related species. Genes involved in sulfur oxidation, central carbon metabolism and transmembrane transport were found. Noteworthy, clusters of genes encoding the photosynthetic machinery and pigment biosynthesis are found on the 0.48 Mb plasmid pTs485. We provide a detailed insight into the Cad16T genome and analyze it in the context of the microbial ecosystem of Lake Cadagno.

KW - Chromatiaceae

KW - CRISPR

KW - Meromictic lake

KW - Okenone

KW - Phototrophic sulfur bacteria

KW - Sulfur cycling

UR - http://www.scopus.com/inward/record.url?scp=85046699077&partnerID=8YFLogxK

U2 - 10.1186/s40793-018-0317-z

DO - 10.1186/s40793-018-0317-z

M3 - Journal article

C2 - 29774086

AN - SCOPUS:85046699077

VL - 13

JO - Standards in Genomic Sciences

JF - Standards in Genomic Sciences

SN - 1944-3277

M1 - 14

ER -

ID: 198771979