PIRD: Pan Immune Repertoire Database

Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › fagfællebedømt

Standard

PIRD : Pan Immune Repertoire Database. / Zhang, Wei; Wang, Longlong; Liu, Ke; Wei, Xiaofeng; Yang, Kai; Du, Wensi; Wang, Shiyu; Guo, Nannan; Ma, Chuanchuan; Luo, Lihua; Wu, Jinghua; Lin, Liya; Yang, Fan; Gao, Fei; Wang, Xie; Li, Tao; Zhang, Ruifang; Saksena, Nitin K.; Yang, Huanming; Wang, Jian; Fang, Lin; Hou, Yong; Xu, Xun; Liu, Xiao.

I: Bioinformatics, Bind 36, Nr. 3, 2020, s. 897-903.

Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › fagfællebedømt

Harvard

Zhang, W, Wang, L, Liu, K, Wei, X, Yang, K, Du, W, Wang, S, Guo, N, Ma, C, Luo, L, Wu, J, Lin, L, Yang, F, Gao, F, Wang, X, Li, T, Zhang, R, Saksena, NK, Yang, H, Wang, J, Fang, L, Hou, Y, Xu, X & Liu, X 2020, 'PIRD: Pan Immune Repertoire Database', Bioinformatics, bind 36, nr. 3, s. 897-903. https://doi.org/10.1093/bioinformatics/btz614

APA

Zhang, W., Wang, L., Liu, K., Wei, X., Yang, K., Du, W., Wang, S., Guo, N., Ma, C., Luo, L., Wu, J., Lin, L., Yang, F., Gao, F., Wang, X., Li, T., Zhang, R., Saksena, N. K., Yang, H., ... Liu, X. (2020). PIRD: Pan Immune Repertoire Database. Bioinformatics, 36(3), 897-903. https://doi.org/10.1093/bioinformatics/btz614

Vancouver

Zhang W, Wang L, Liu K, Wei X, Yang K, Du W o.a. PIRD: Pan Immune Repertoire Database. Bioinformatics. 2020;36(3):897-903. https://doi.org/10.1093/bioinformatics/btz614

Author

Zhang, Wei ; Wang, Longlong ; Liu, Ke ; Wei, Xiaofeng ; Yang, Kai ; Du, Wensi ; Wang, Shiyu ; Guo, Nannan ; Ma, Chuanchuan ; Luo, Lihua ; Wu, Jinghua ; Lin, Liya ; Yang, Fan ; Gao, Fei ; Wang, Xie ; Li, Tao ; Zhang, Ruifang ; Saksena, Nitin K. ; Yang, Huanming ; Wang, Jian ; Fang, Lin ; Hou, Yong ; Xu, Xun ; Liu, Xiao. / PIRD : Pan Immune Repertoire Database. I: Bioinformatics. 2020 ; Bind 36, Nr. 3. s. 897-903.

Bibtex

@article{9b657681e81d40cda175f8466b243895,
title = "PIRD: Pan Immune Repertoire Database",
abstract = "MOTIVATION: T and B cell receptors (TCRs and BCRs) play a pivotal role in the adaptive immune system by recognizing an enormous variety of external and internal antigens. Understanding these receptors is critical for exploring the process of immunoreaction and exploiting potential applications in immunotherapy and antibody drug design. Although a large number of samples have had their TCR and BCR repertoires sequenced using high-throughput sequencing in recent years, very few databases have been constructed to store these kinds of data. To resolve this issue, we developed a database. RESULTS: We developed a database, the Pan Immune Repertoire Database (PIRD), located in China National GeneBank (CNGBdb), to collect and store annotated TCR and BCR sequencing data, including from Homo sapiens and other species. In addition to data storage, PIRD also provides functions of data visualization and interactive online analysis. Additionally, a manually curated database of TCRs and BCRs targeting known antigens (TBAdb) was also deposited in PIRD. AVAILABILITY AND IMPLEMENTATION: PIRD can be freely accessed at https://db.cngb.org/pird.",
author = "Wei Zhang and Longlong Wang and Ke Liu and Xiaofeng Wei and Kai Yang and Wensi Du and Shiyu Wang and Nannan Guo and Chuanchuan Ma and Lihua Luo and Jinghua Wu and Liya Lin and Fan Yang and Fei Gao and Xie Wang and Tao Li and Ruifang Zhang and Saksena, {Nitin K.} and Huanming Yang and Jian Wang and Lin Fang and Yong Hou and Xun Xu and Xiao Liu",
year = "2020",
doi = "10.1093/bioinformatics/btz614",
language = "English",
volume = "36",
pages = "897--903",
journal = "Computer Applications in the Biosciences",
issn = "1471-2105",
publisher = "Oxford University Press",
number = "3",

}

RIS

TY - JOUR

T1 - PIRD

T2 - Pan Immune Repertoire Database

AU - Zhang, Wei

AU - Wang, Longlong

AU - Liu, Ke

AU - Wei, Xiaofeng

AU - Yang, Kai

AU - Du, Wensi

AU - Wang, Shiyu

AU - Guo, Nannan

AU - Ma, Chuanchuan

AU - Luo, Lihua

AU - Wu, Jinghua

AU - Lin, Liya

AU - Yang, Fan

AU - Gao, Fei

AU - Wang, Xie

AU - Li, Tao

AU - Zhang, Ruifang

AU - Saksena, Nitin K.

AU - Yang, Huanming

AU - Wang, Jian

AU - Fang, Lin

AU - Hou, Yong

AU - Xu, Xun

AU - Liu, Xiao

PY - 2020

Y1 - 2020

N2 - MOTIVATION: T and B cell receptors (TCRs and BCRs) play a pivotal role in the adaptive immune system by recognizing an enormous variety of external and internal antigens. Understanding these receptors is critical for exploring the process of immunoreaction and exploiting potential applications in immunotherapy and antibody drug design. Although a large number of samples have had their TCR and BCR repertoires sequenced using high-throughput sequencing in recent years, very few databases have been constructed to store these kinds of data. To resolve this issue, we developed a database. RESULTS: We developed a database, the Pan Immune Repertoire Database (PIRD), located in China National GeneBank (CNGBdb), to collect and store annotated TCR and BCR sequencing data, including from Homo sapiens and other species. In addition to data storage, PIRD also provides functions of data visualization and interactive online analysis. Additionally, a manually curated database of TCRs and BCRs targeting known antigens (TBAdb) was also deposited in PIRD. AVAILABILITY AND IMPLEMENTATION: PIRD can be freely accessed at https://db.cngb.org/pird.

AB - MOTIVATION: T and B cell receptors (TCRs and BCRs) play a pivotal role in the adaptive immune system by recognizing an enormous variety of external and internal antigens. Understanding these receptors is critical for exploring the process of immunoreaction and exploiting potential applications in immunotherapy and antibody drug design. Although a large number of samples have had their TCR and BCR repertoires sequenced using high-throughput sequencing in recent years, very few databases have been constructed to store these kinds of data. To resolve this issue, we developed a database. RESULTS: We developed a database, the Pan Immune Repertoire Database (PIRD), located in China National GeneBank (CNGBdb), to collect and store annotated TCR and BCR sequencing data, including from Homo sapiens and other species. In addition to data storage, PIRD also provides functions of data visualization and interactive online analysis. Additionally, a manually curated database of TCRs and BCRs targeting known antigens (TBAdb) was also deposited in PIRD. AVAILABILITY AND IMPLEMENTATION: PIRD can be freely accessed at https://db.cngb.org/pird.

U2 - 10.1093/bioinformatics/btz614

DO - 10.1093/bioinformatics/btz614

M3 - Journal article

C2 - 31373607

AN - SCOPUS:85079077505

VL - 36

SP - 897

EP - 903

JO - Computer Applications in the Biosciences

JF - Computer Applications in the Biosciences

SN - 1471-2105

IS - 3

ER -

ID: 238003194