Comparative phylogeography study reveals introgression and incomplete lineage sorting during rapid diversification of Rhodiola
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Comparative phylogeography study reveals introgression and incomplete lineage sorting during rapid diversification of Rhodiola. / You, Jianling; Lougheed, Stephen C.; Zhao, Yao; Zhang, Guojie; Liu, Wensheng; Lu, Fan; Wang, Yuguo; Zhang, Wenju; Yang, Ji; Qiong, La; Song, Zhiping.
In: Annals of Botany, Vol. 129, No. 2, 2022, p. 185-200.Research output: Contribution to journal › Journal article › Research › peer-review
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TY - JOUR
T1 - Comparative phylogeography study reveals introgression and incomplete lineage sorting during rapid diversification of Rhodiola
AU - You, Jianling
AU - Lougheed, Stephen C.
AU - Zhao, Yao
AU - Zhang, Guojie
AU - Liu, Wensheng
AU - Lu, Fan
AU - Wang, Yuguo
AU - Zhang, Wenju
AU - Yang, Ji
AU - Qiong, La
AU - Song, Zhiping
N1 - Publisher Copyright: © The Author(s) 2021. Published by Oxford University Press on behalf of the Annals of Botany Company. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.
PY - 2022
Y1 - 2022
N2 - BACKGROUND AND AIMS: Many plant taxa in the Qinghai-Tibetan Plateau (QTP) and the Hengduan Mountains (HM) radiated rapidly during the Quaternary but with frequent secondary contact between diverging populations. Incomplete lineage sorting and introgressive hybridization might be involved during the rapid radiation, but their effects on phylogeography have not been fully determined. METHODS: We investigated the chloroplast DNA (cpDNA)/internal transcribed spacer (ITS) sequence variations of 611 samples of Rhodiola bupleuroides, R. discolor, R. fastigiata and R. chrysanthemifolia from the QTP and HM to compare the phylogeographic patterns between the four species with different evolutionary histories, geographic ranges and reproductive modes. KEY RESULTS: The divergence times of these species were consistent with the last peak of in situ speciation in the HM. While closely related species exhibited different phylogeographic patterns, they shared several ribotypes and haplotypes in sympatric populations, suggesting introgressive hybridization. A significant phylogenetic discordance between ribotypes and haplotypes was detected in three species, implying incomplete lineage sorting. Rhodiola discolor houses an extraordinary richness of cpDNA haplotypes, and this finding may be attributed to adaptive radiation. CONCLUSION: In addition to geographic isolation and climate oscillations during the Quaternary, both introgressive hybridization and incomplete lineage sorting play important roles in species that experienced rapid diversification in the QTP and HM.
AB - BACKGROUND AND AIMS: Many plant taxa in the Qinghai-Tibetan Plateau (QTP) and the Hengduan Mountains (HM) radiated rapidly during the Quaternary but with frequent secondary contact between diverging populations. Incomplete lineage sorting and introgressive hybridization might be involved during the rapid radiation, but their effects on phylogeography have not been fully determined. METHODS: We investigated the chloroplast DNA (cpDNA)/internal transcribed spacer (ITS) sequence variations of 611 samples of Rhodiola bupleuroides, R. discolor, R. fastigiata and R. chrysanthemifolia from the QTP and HM to compare the phylogeographic patterns between the four species with different evolutionary histories, geographic ranges and reproductive modes. KEY RESULTS: The divergence times of these species were consistent with the last peak of in situ speciation in the HM. While closely related species exhibited different phylogeographic patterns, they shared several ribotypes and haplotypes in sympatric populations, suggesting introgressive hybridization. A significant phylogenetic discordance between ribotypes and haplotypes was detected in three species, implying incomplete lineage sorting. Rhodiola discolor houses an extraordinary richness of cpDNA haplotypes, and this finding may be attributed to adaptive radiation. CONCLUSION: In addition to geographic isolation and climate oscillations during the Quaternary, both introgressive hybridization and incomplete lineage sorting play important roles in species that experienced rapid diversification in the QTP and HM.
KW - Rhodiola
KW - hybridization
KW - incomplete lineage sorting
KW - phylogeography
U2 - 10.1093/aob/mcab133
DO - 10.1093/aob/mcab133
M3 - Journal article
C2 - 34718397
AN - SCOPUS:85123901174
VL - 129
SP - 185
EP - 200
JO - Annals of Botany
JF - Annals of Botany
SN - 0305-7364
IS - 2
ER -
ID: 298642412