Freshwater Biology

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  1. 2023
  2. Published

    The recovery of European freshwater biodiversity has come to a halt

    Haase, P., Bowler, D. E., Baker, N. J., Bonada, N., Domisch, S., Garcia Marquez, J. R., Heino, J., Hering, D., Jähnig, S. C., Schmidt-Kloiber, A., Stubbington, R., Altermatt, F., Álvarez-Cabria, M., Amatulli, G., Angeler, D. G., Archambaud-Suard, G., Jorrín, I. A., Aspin, T., Azpiroz, I., Bañares, I. & 76 others, Ortiz, J. B., Bodin, C. L., Bonacina, L., Bottarin, R., Cañedo-Argüelles, M., Csabai, Z., Datry, T., de Eyto, E., Dohet, A., Dörflinger, G., Drohan, E., Eikland, K. A., England, J., Eriksen, T. E., Evtimova, V., Feio, M. J., Ferréol, M., Floury, M., Forcellini, M., Forio, M. A. E., Fornaroli, R., Friberg, N., Fruget, J. F., Georgieva, G., Goethals, P., Graça, M. A. S., Graf, W., House, A., Huttunen, K. L., Jensen, T. C., Johnson, R. K., Jones, J. I., Kiesel, J., Kuglerová, L., Larrañaga, A., Leitner, P., L’Hoste, L., Lizée, M. H., Lorenz, A. W., Maire, A., Arnaiz, J. A. M., McKie, B. G., Millán, A., Monteith, D., Muotka, T., Murphy, J. F., Ozolins, D., Paavola, R., Paril, P., Peñas, F. J., Pilotto, F., Polášek, M., Rasmussen, J. J., Rubio, M., Sánchez-Fernández, D., Sandin, L., Schäfer, R. B., Scotti, A., Shen, L. Q., Skuja, A., Stoll, S., Straka, M., Timm, H., Tyufekchieva, V. G., Tziortzis, I., Uzunov, Y., van der Lee, G. H., Vannevel, R., Varadinova, E., Várbíró, G., Velle, G., Verdonschot, P. F. M., Verdonschot, R. C. M., Vidinova, Y., Wiberg-Larsen, P. & Welti, E. A. R., 2023, In: Nature. 620, 7974, p. 582-588 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    A meta-analysis of plant tissue O2 dynamics

    Herzog, Max, Pellegrini, Elisa & Pedersen, Ole, 2023, In: Functional Plant Biology. 50, 7, 13 p.

    Research output: Contribution to journal › Review › Research › peer-review

  4. Published

    Enhancing Flood Tolerance in Wheat (Triticum aestivum) and Rice (Oryza sativa): Identifying Key Physiological Traits

    Herzog, Max, Tong, Shuai, Kjær, Johan Emil, Konnerup, D., Peralta Ogorek, Lucas León, Song, Zhiwei, Pellegrini, Elisa & Pedersen, Ole, 2023. 1 p.

    Research output: Contribution to conference › Conference abstract for conference › Research › peer-review

  5. Published

    Mitigation of Greenhouse Gas Emissions from Rice via Manipulation of Key Root Traits

    Jimenez Serna, Juan de la Cruz & Pedersen, Ole, 2023, In: Rice. 16, 1, 10 p., 24.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Oxygen Depletion in Arctic Lakes: Circumpolar Trends, Biogeochemical Processes, and Implications of Climate Change

    Klanten, Y., Couture, R. M., Christoffersen, Kirsten Seestern, Vincent, W. F. & Antoniades, D., 2023, In: Global Biogeochemical Cycles. 37, 5, 20 p., e2022GB007616.

    Research output: Contribution to journal › Review › Research › peer-review

  7. Published

    Linkages between seagrass tissue O2 dynamics and ecosystem oxidation and feedbacks are revealed using microsensors in situ

    Koch, M., Johnson, C., MacLeod, K., Travis, L., Madden, C. & Pedersen, Ole, 2023, p. 221. 1 p.

    Research output: Contribution to conference › Conference abstract for conference › Research › peer-review

  8. Published

    A quantitative trait locus conferring flood tolerance to deepwater rice regulates the formation of two distinct types of aquatic adventitious roots

    Lin, C., Peralta Ogorek, Lucas León, Liu, D., Pedersen, Ole & Sauter, M., 2023, In: New Phytologist. 238, 4, 17 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Allometric relationships between leaf and petiole traits across 31 floating-leaved plants reveal a different adaptation pattern from terrestrial plants

    Liu, Y., Liu, H., Båstrup-Spohr, Lars, Li, Z., Li, W., Pan, J. & Cao, Y., 2023, In: Annals of Botany. 131, 3, 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Environmental predictors of lake fish diversity across gradients in lake age and spatial scale

    Martinsen, K. T., Kristensen, E., Båstrup-Spohr, Lars, Søndergaard, M., Carl, Henrik, Jeppesen, E., Sand-Jensen, Kaj & Kragh, T., 2023, In: Freshwater Biology. 68, 7, 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Predicting lake bathymetry from the topography of the surrounding terrain using deep learning

    Martinsen, K. T., Sand-Jensen, Kaj & Selvan, Raghav, 2023, In: Limnology and Oceanography: Methods. 21, 10, p. 625-636

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Flood-tolerant rice for enhanced production and livelihood of smallholder farmers of Africa

    Mwakyusa, L., Dixit, S., Herzog, Max, Heredia, M. C., Madege, R. R. & Kilasi, N. L., 2023, In: Frontiers in Sustainable Food Systems. 7, 13 p., 1244460.

    Research output: Contribution to journal › Review › Research › peer-review

  13. Published

    Screening of potential donors for anaerobic stress tolerance during germination in rice

    Mwakyusa, L., Heredia, M. C., Kilasi, N. L., Madege, R. R., Herzog, Max & Dixit, S., 2023, In: Frontiers in Plant Science. 14, 13 p., 1261101.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Plastic debris in lakes and reservoirs

    Nava, V., Chandra, S., Aherne, J., Alfonso, M. B., Antão-Geraldes, A. M., Attermeyer, K., Bao, R., Bartrons, M., Berger, S. A., Biernaczyk, M., Bissen, R., Brookes, J. D., Brown, D., Cañedo-Argüelles, M., Canle, M., Capelli, C., Carballeira, R., Cereijo, J. L., Chawchai, S., Christensen, S. T. & 59 others, Christoffersen, Kirsten Seestern, de Eyto, E., Delgado, J., Dornan, T. N., Doubek, J. P., Dusaucy, J., Erina, O., Ersoy, Z., Feuchtmayr, H., Frezzotti, M. L., Galafassi, S., Gateuille, D., Gonçalves, V., Grossart, H. P., Hamilton, D. P., Harris, T. D., Kangur, K., Kankılıç, G. B., Kessler, R., Kiel, C., Krynak, E. M., Leiva-Presa, À., Lepori, F., Matias, M. G., Matsuzaki, S. I. S., McElarney, Y., Messyasz, B., Mitchell, M., Mlambo, M. C., Motitsoe, S. N., Nandini, S., Orlandi, V., Owens, C., Özkundakci, D., Pinnow, S., Pociecha, A., Raposeiro, P. M., Rõõm, E. I., Rotta, F., Salmaso, N., Sarma, S. S. S., Sartirana, D., Scordo, F., Sibomana, C., Siewert, D., Stepanowska, K., Tavşanoğlu, Ü. N., Tereshina, M., Thompson, J., Tolotti, M., Valois, A., Verburg, P., Welsh, B., Wesolek, B., Weyhenmeyer, G. A., Wu, N., Zawisza, E., Zink, L. & Leoni, B., 2023, In: Nature. 619, p. 317-322 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Reasons for the dramatic loss of Lobelia dortmanna, a keystone plant species of softwater lakes in the Northern Hemisphere

    Nielsen, S. R., Martinsen, K. T., Pedersen, Ole & Båstrup-Spohr, Lars, 2023, In: Freshwater Biology. 68, 10, p. 1673-1684 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    The barrier to radial oxygen loss protects roots against hydrogen sulphide intrusion and its toxic effect

    Peralta Ogorek, Lucas León, Takahashi, H., Nakazono, M. & Pedersen, Ole, 2023, In: New Phytologist. 238, 5, p. 1825-1837 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Salt-affected soils in Tanzanian agricultural lands: Type of soils and extent of the problem

    Omar, M. M., Shitindi, M. J., Massawe, B. H. J., Fue, K. G., Meliyo, J. L. & Pedersen, Ole, 2023, In: Sustainable Environment. 9, 1, 19 p., 2205731.

    Research output: Contribution to journal › Review › Research › peer-review

  18. Published

    Outer apoplastic barriers in roots: prospects for abiotic stress tolerance

    Peralta Ogorek, Lucas León, Jimenez Serna, Juan de la Cruz, Visser, E. J. W., Takahashi, H., Nakazono, M., Shabala, S. & Pedersen, Ole, 2023, In: Functional Plant Biology. 51, 11 p., FP23133.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    The impacts of the oil palm expansion on freshwater biodiversity and ecosystem functioning: The role of riparian buffers in mitigating stream biodiversity loss

    Rojas, Oscar, 2023, Department of Biology, Faculty of Science, University of Copenhagen. 171 p.

    Research output: Book/Report › Ph.D. thesis › Research

  20. Published

    Drivers and ecology of Ceratium furcoides invasion of a Brazilian subtropical reservoir and its interaction with the phytoplankton community

    Rojas-Castillo, O. A., Pereira, L., Buffon, P. & de Souza Cardoso, L., 2023, In: Limnologica. 101, 13 p., 126080.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Forest buffer-strips mitigate the negative impact of oil palm plantations on stream communities

    Rojas-castillo, O. A., Kepfer Rojas, Sebastian, Vargas, N. & Jacobsen, Dean, 2023, In: Science of the Total Environment. 873, 12 p., 162259.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Vandkraft Versus Vandmiljø: Et opløftende eksempel fra De italienske Alper

    Scotti, A., Bottarin, R. & Jacobsen, Dean, 2023, In: Aktuel Naturvidenskab. 4, p. 38-42 5 p.

    Research output: Contribution to journal › Journal article › Communication

  23. Published

    The quantitative importance of key root traits for radial water loss under low water potential

    Song, Zhiwei, Zonta, F., Peralta Ogorek, Lucas León, Bastegaard, V. K., Herzog, Max, Pellegrini, Elisa & Pedersen, Ole, 2023, In: Plant and Soil. 482, 18 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Floods stress in lowland rice production: experiences of rice farmers in Kilombero and Lower-Rufiji floodplains, Tanzania

    Sulle Michael, P., Mwakyusa, L., G. Sanga, H., J. Shitindi, M., Kwaslema, D. R., Herzog, Max, L. Meliyo, J. & Massawe, B. H. J., 2023, In: Frontiers in Sustainable Food Systems. 7, 18 p., 1206754.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Uncovering spatiotemporal pattern of floods with Sentinel-1 synthetic aperture radar in major rice-growing river basins of Tanzania

    Sulle Michael, P., G. Sanga, H., J. Shitindi, M., Herzog, Max, L. Meliyo, J. & Massawe, B. H. J., 2023, In: Frontiers in Earth Science. 11, 15 p., 1183834.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    Methane and carbon dioxide fluxes at high spatiotemporal resolution from a small temperate lake

    Sø, Jonas Stage, Sand-Jensen, Kaj, Martinsen, K. T., Polauke, E., Kjær, Johan Emil, Reitzel, K. & Kragh, T., 2023, In: Science of the Total Environment. 878, 11 p., 162895.

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    Nyt udstyr måler tabene af metan og CO2 fra søer

    Sø, Jonas Stage, Sand-Jensen, Kaj, Martinsen, K. T. & Kragh, T., 25 May 2023, Videnskab.dk.

    Research output: Other contribution › Net publication - Internet publication › Communication

  28. Published

    Drying of Springs in the Himalayan Region of Nepal: Perspectives of Local Government Leaders on Causes, Consequences, and Conservation Efforts

    Thapa, B., Bhattarai, C., Dahal, N., Tiwari, S. & Jacobsen, Dean, 2023, In: Mountain Research and Development. 43, 4, p. R9-R15 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    Can the Wild Perennial, Rhizomatous Rice Species Oryza longistaminata be a Candidate for De Novo Domestication?

    Tong, Shuai, Ashikari, M., Nagai, K. & Pedersen, Ole, 2023, In: Rice. 16, 1, 20 p., 13.

    Research output: Contribution to journal › Review › Research › peer-review

  30. Published

    Responses of key root traits in the genus Oryza to soil flooding mimicked by stagnant, deoxygenated nutrient solution

    Tong, Shuai, Kjær, Johan Emil, Peralta Ogorek, Lucas León, Pellegrini, Elisa, Song, Zhiwei, Pedersen, Ole & Herzog, Max, 2023, In: Journal of Experimental Botany. 74, 6, 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    The resilience journey of rice: Root traits, genome editing and silicon-mediated strategies for enhanced abiotic stress tolerance in rice

    Tong, Shuai, 2023, Department of Biology, Faculty of Science, University of Copenhagen. 139 p.

    Research output: Book/Report › Ph.D. thesis › Research

  32. Published

    Unlocking environmental archives in the Arctic—insights from modern diatom-environment relationships in lakes and ponds across Greenland

    Weckström, K., Weckström, J., Wischnewski, J., Davidson, T. A., Lauridsen, T. L., Landkildehus, F., Christoffersen, Kirsten Seestern & Jeppesen, E., 2023, In: Frontiers in Ecology and Evolution. 11, 15 p., 1177638.

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. 2024
  34. Published

    Recent progress in understanding the cellular and genetic basis of plant responses to low oxygen holds promise for developing flood-resilient crops

    Fagerstedt, K. V., Pucciariello, C., Pedersen, Ole & Perata, P., 2024, In: Journal of Experimental Botany. 75, 5, p. 1217–1233 17 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    Response of underwater photosynthesis to light, CO2, temperature, and submergence time of Taxodium distichum, a flood-tolerant tree

    Guo, J., Xue, J., Yin, Y., Pedersen, Ole & Hua, J., 2024, In: Frontiers in Plant Science. 15, 13 p., 1355729.

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    Regional impacts of warming on biodiversity and biomass in high latitude stream ecosystems across the Northern Hemisphere

    Jackson, M. C., Friberg, N., Moliner Cachazo, L., Clark, D. R., Mutinova, P. T., O’Gorman, E. J., Kordas, R. L., Gallo, B., Pichler, D. E., Bespalaya, Y., Aksenova, O. V., Milner, A., Brooks, S. J., Dunn, N., Lee, K. W. K., Ólafsson, J. S., Gíslason, G. M., Millan, L., Bell, T., Dumbrell, A. J. & 1 others, Woodward, G., 2024, In: Communications Biology . 7, 1, 8 p., 316.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    Flooding stress and responses to hypoxia in plants

    Jimenez Serna, Juan de la Cruz, Mustroph, A., Pedersen, Ole, Weits, D. A. & Schmidt-schippers, R., 2024, In: Functional Plant Biology. 51, 4, 5 p., FP24061.

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    Overcoming constraints to measuring O2 diffusivity and consumption of intact roots

    Jimenez Serna, Juan de la Cruz, Armstrong, W., Colmer, T. D. & Pedersen, Ole, 2024, In: Plant Physiology. 195, 1, p. 283-286 4 p., kiae046.

    Research output: Contribution to journal › Comment/debate › Research › peer-review

  39. Published

    Flooding-adaptive root and shoot traits in rice

    Lin, C., Zhang, Z., Shen, X., Liu, Dan & Pedersen, Ole, 2024, In: Functional Plant Biology. 51, 1, 13 p., FP23226.

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    Long-term phytoplankton dynamics in two High Arctic lakes (north-east Greenland)

    Moedt, Sanne Mariël, Olrik, K., Schmidt, N. M., Jeppesen, E. & Christoffersen, Kirsten Seestern, 2024, In: Freshwater Biology. 69, 3, p. 403-415 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    Assessment of salt-affected soil in selected rice irrigation schemes in Tanzania: understanding salt types for optimizing management approaches

    Omar, M. M., Massawe, B. H. J., Shitindi, M. J., Pedersen, Ole, Meliyo, J. L. & Fue, K. G., 2024, In: Frontiers in Soil Science. 4, 14 p., 1372838.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    Function and induction of the root barrier to radial O2 loss. A commentary on ‘Exogenous abscisic acid induces the formation of a suberized barrier to radial oxygen loss in adventitious roots of barley (Hordeum vulgare)’

    Pedersen, Ole & Jimenez Serna, Juan de la Cruz, 2024, In: Annals of Botany.

    Research output: Contribution to journal › Comment/debate › Research › peer-review

  43. Published

    Root acclimations to soil flooding prime rice (Oryza sativa L.) for subsequent conditions of water deficit

    Peralta Ogorek, Lucas León, Song, Zhiwei, Pellegrini, Elisa, Liu, Fulai, Tomasella, M., Nardini, A. & Pedersen, Ole, 2024, In: Plant and Soil. 494, p. 529-546

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    Water quality in a shallow eutrophic lake is unaffected by extensive thinning of planktivorous and benthivorous fish species

    Polauke, E., Sø, Jonas Stage, Carl, Henrik, Møller, Peter Rask, Reitzel, K., Sand-Jensen, Kaj & Kragh, T., 2024, In: Journal of Environmental Management. 356, 13 p., 120570.

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    Land-use effects on leaf-litter breakdown in streams in a tropical lowland catchment

    Rojas-Castillo, O. A., Kepfer Rojas, Sebastian & Jacobsen, Dean, 2024, In: Aquatic Sciences. 86, 15 p., 67.

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    Meta‐analysis Contrasting Freshwater Biodiversity in Forests and Oil Palm Plantations with and without Riparian Buffers

    Rojas‐Castillo, O. A., Kepfer Rojas, Sebastian, Juen, L., Fogaça De Assis Montag, L., Carvalho, F. G., Mendes, T. P., Chua, K. W. J., Wilkinson, C. L., Amal, M. N. A., Fahmi‐Ahmad, M. & Jacobsen, Dean, 2024, In: Conservation Biology. 38, 1, p. 1-14 14 p., e14172.

    Research output: Contribution to journal › Review › Research › peer-review

  47. Published

    Freshwater Ecosystems, Human Impact on

    Sand-Jensen, Kaj, 2024, Encyclopedia of Biodiversity, Third Edition: Volume 1-7. 3 ed. Elsevier, p. 617-635 19 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  48. Published

    The relationships between biotic uniqueness and abiotic uniqueness are context dependent across drainage basins worldwide

    Snåre, H., García-Girón, J., Alahuhta, J., Bini, L. M., Boda, P., Bonada, N., Brasil, L. S., Callisto, M., Castro, D. M. P., Chen, K., Csabai, Z., Datry, T., Domisch, S., García-Marquez, J. R., Floury, M., Friberg, N., Gill, B. A., González-Trujillo, J. D., Göthe, E., Haase, P. & 29 others, Hamada, N., Hill, M. J., Hjort, J., Juen, L., Jupke, J. F., de Faria, A. P. J., Li, Z., Ligeiro, R., Linares, M. S., Luiza-Andrade, A., Macedo, D. R., Mathers, K. L., Mellado-Diaz, A., Milosevic, D., Moya, N., Poff, N. L. R., Rolls, R. J., Roque, F. O., Saito, V. S., Sandin, L., Schäfer, R. B., Scotti, A., Siqueira, T., Martins, R. T., Valente-Neto, F., Wang, B., Wang, J., Xie, Z. & Heino, J., 2024, In: Landscape Ecology. 39, 4, 18 p., 86.

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    Hourly methane and carbon dioxide fluxes from temperate ponds

    Sø, Jonas Stage, Martinsen, K. T., Kragh, T. & Sand-Jensen, Kaj, 2024, In: Biogeochemistry. 167, p. 177-195 19 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    Fremme af spontan vegetation efter gran

    Thomasen, J. M., Kepfer Rojas, Sebastian, Båstrup-Spohr, Lars & Raulund-Rasmussen, Karsten, 22 Apr 2024, 6 p. Institut for Geovidenskab og Naturforvaltning, Københavns Universitet.

    Research output: Other contribution › Net publication - Internet publication › Communication

  51. E-pub ahead of print

    Hypoxia in tomato (Solanum lycopersicum) fruit during ripening: Biophysical elucidation by a 3D reaction–diffusion model

    Xiao, H., Verboven, P., Tong, Shuai, Pedersen, Ole & Nicolaï, B., 2024, (E-pub ahead of print) In: Plant Physiology.

    Research output: Contribution to journal › Journal article › Research › peer-review

  52. E-pub ahead of print

    Lake food web structure in Teici Nature reserve, Latvia: fish presence shapes functioning of pristine bog lake food webs

    Zagars, M., Christoffersen, Kirsten Seestern & Cremona, F., 2024, (E-pub ahead of print) In: Hydrobiologia.

    Research output: Contribution to journal › Journal article › Research › peer-review

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