High-throughput analyses and Bayesian network modeling highlight novel epigenetic Adverse Outcome Pathway networks of DNA methyltransferase inhibitor mediated transgenerational effects

Research output: Contribution to journalJournal articleResearchpeer-review

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High-throughput analyses and Bayesian network modeling highlight novel epigenetic Adverse Outcome Pathway networks of DNA methyltransferase inhibitor mediated transgenerational effects. / Song, You; Kamstra, Jorke H.; Cao, Yang; Asselman, Jana; Anglès d'Auriac, Marc; Friberg, Nikolai.

In: Journal of Hazardous Materials, Vol. 408, 124490, 2021.

Research output: Contribution to journalJournal articleResearchpeer-review

Harvard

Song, Y, Kamstra, JH, Cao, Y, Asselman, J, Anglès d'Auriac, M & Friberg, N 2021, 'High-throughput analyses and Bayesian network modeling highlight novel epigenetic Adverse Outcome Pathway networks of DNA methyltransferase inhibitor mediated transgenerational effects', Journal of Hazardous Materials, vol. 408, 124490. https://doi.org/10.1016/j.jhazmat.2020.124490

APA

Song, Y., Kamstra, J. H., Cao, Y., Asselman, J., Anglès d'Auriac, M., & Friberg, N. (2021). High-throughput analyses and Bayesian network modeling highlight novel epigenetic Adverse Outcome Pathway networks of DNA methyltransferase inhibitor mediated transgenerational effects. Journal of Hazardous Materials, 408, [124490]. https://doi.org/10.1016/j.jhazmat.2020.124490

Vancouver

Song Y, Kamstra JH, Cao Y, Asselman J, Anglès d'Auriac M, Friberg N. High-throughput analyses and Bayesian network modeling highlight novel epigenetic Adverse Outcome Pathway networks of DNA methyltransferase inhibitor mediated transgenerational effects. Journal of Hazardous Materials. 2021;408. 124490. https://doi.org/10.1016/j.jhazmat.2020.124490

Author

Song, You ; Kamstra, Jorke H. ; Cao, Yang ; Asselman, Jana ; Anglès d'Auriac, Marc ; Friberg, Nikolai. / High-throughput analyses and Bayesian network modeling highlight novel epigenetic Adverse Outcome Pathway networks of DNA methyltransferase inhibitor mediated transgenerational effects. In: Journal of Hazardous Materials. 2021 ; Vol. 408.

Bibtex

@article{ac4ccbb06be94bad8d7a8264d89a0a5f,
title = "High-throughput analyses and Bayesian network modeling highlight novel epigenetic Adverse Outcome Pathway networks of DNA methyltransferase inhibitor mediated transgenerational effects",
abstract = "A number of epigenetic modulating chemicals are known to affect multiple generations of a population from a single ancestral exposure, thus posing transgenerational hazards. The present study aimed to establish a high-throughput (HT) analytical workflow for cost-efficient concentration-response analysis of epigenetic and phenotypic effects, and to support the development of novel Adverse Outcome Pathway (AOP) networks for DNA methyltransferase (DNMT) inhibitor-mediated transgenerational effects on aquatic organisms. The model DNMT inhibitor 5-azacytidine (5AC) and the model freshwater crustacean Daphnia magna were used to generate new experimental data and served as prototypes to construct AOPs for aquatic organisms. Targeted HT bioassays (DNMT ELISA, MS-HRM and qPCR) in combination with multigenerational ecotoxicity tests revealed concentration-dependent transgenerational (F0-F3) effects of 5AC on total DNMT activity, DNA promoter methylation, gene body methylation, gene transcription and reproduction. Top sensitive toxicity pathways related to 5AC exposure, such as apoptosis and DNA damage responses were identified in both F0 and F3 using Gaussian Bayesian network modeling. Two novel epigenetic AOP networks on DNMT inhibitor mediated one-generational and transgenerational effects were developed for aquatic organisms and assessed for the weight of evidence. The new HT analytical workflow and AOPs can facilitate future ecological hazard assessment of epigenetic modulating chemicals.",
keywords = "5-Azacytidine, AOP, Daphnia, DNA methylation, Quantitative response-response relationships, Weight of evidence",
author = "You Song and Kamstra, {Jorke H.} and Yang Cao and Jana Asselman and {Angl{\`e}s d'Auriac}, Marc and Nikolai Friberg",
note = "Publisher Copyright: {\textcopyright} 2020 The Authors",
year = "2021",
doi = "10.1016/j.jhazmat.2020.124490",
language = "English",
volume = "408",
journal = "Journal of Hazardous Materials",
issn = "0304-3894",
publisher = "Elsevier",

}

RIS

TY - JOUR

T1 - High-throughput analyses and Bayesian network modeling highlight novel epigenetic Adverse Outcome Pathway networks of DNA methyltransferase inhibitor mediated transgenerational effects

AU - Song, You

AU - Kamstra, Jorke H.

AU - Cao, Yang

AU - Asselman, Jana

AU - Anglès d'Auriac, Marc

AU - Friberg, Nikolai

N1 - Publisher Copyright: © 2020 The Authors

PY - 2021

Y1 - 2021

N2 - A number of epigenetic modulating chemicals are known to affect multiple generations of a population from a single ancestral exposure, thus posing transgenerational hazards. The present study aimed to establish a high-throughput (HT) analytical workflow for cost-efficient concentration-response analysis of epigenetic and phenotypic effects, and to support the development of novel Adverse Outcome Pathway (AOP) networks for DNA methyltransferase (DNMT) inhibitor-mediated transgenerational effects on aquatic organisms. The model DNMT inhibitor 5-azacytidine (5AC) and the model freshwater crustacean Daphnia magna were used to generate new experimental data and served as prototypes to construct AOPs for aquatic organisms. Targeted HT bioassays (DNMT ELISA, MS-HRM and qPCR) in combination with multigenerational ecotoxicity tests revealed concentration-dependent transgenerational (F0-F3) effects of 5AC on total DNMT activity, DNA promoter methylation, gene body methylation, gene transcription and reproduction. Top sensitive toxicity pathways related to 5AC exposure, such as apoptosis and DNA damage responses were identified in both F0 and F3 using Gaussian Bayesian network modeling. Two novel epigenetic AOP networks on DNMT inhibitor mediated one-generational and transgenerational effects were developed for aquatic organisms and assessed for the weight of evidence. The new HT analytical workflow and AOPs can facilitate future ecological hazard assessment of epigenetic modulating chemicals.

AB - A number of epigenetic modulating chemicals are known to affect multiple generations of a population from a single ancestral exposure, thus posing transgenerational hazards. The present study aimed to establish a high-throughput (HT) analytical workflow for cost-efficient concentration-response analysis of epigenetic and phenotypic effects, and to support the development of novel Adverse Outcome Pathway (AOP) networks for DNA methyltransferase (DNMT) inhibitor-mediated transgenerational effects on aquatic organisms. The model DNMT inhibitor 5-azacytidine (5AC) and the model freshwater crustacean Daphnia magna were used to generate new experimental data and served as prototypes to construct AOPs for aquatic organisms. Targeted HT bioassays (DNMT ELISA, MS-HRM and qPCR) in combination with multigenerational ecotoxicity tests revealed concentration-dependent transgenerational (F0-F3) effects of 5AC on total DNMT activity, DNA promoter methylation, gene body methylation, gene transcription and reproduction. Top sensitive toxicity pathways related to 5AC exposure, such as apoptosis and DNA damage responses were identified in both F0 and F3 using Gaussian Bayesian network modeling. Two novel epigenetic AOP networks on DNMT inhibitor mediated one-generational and transgenerational effects were developed for aquatic organisms and assessed for the weight of evidence. The new HT analytical workflow and AOPs can facilitate future ecological hazard assessment of epigenetic modulating chemicals.

KW - 5-Azacytidine

KW - AOP

KW - Daphnia

KW - DNA methylation

KW - Quantitative response-response relationships

KW - Weight of evidence

U2 - 10.1016/j.jhazmat.2020.124490

DO - 10.1016/j.jhazmat.2020.124490

M3 - Journal article

C2 - 33199140

AN - SCOPUS:85096198771

VL - 408

JO - Journal of Hazardous Materials

JF - Journal of Hazardous Materials

SN - 0304-3894

M1 - 124490

ER -

ID: 306675024