- Published
Biofilms in chronic infections - a matter of opportunity - monospecies biofilms in multispecies infections
Burmølle, Mette, Thomsen, T. R., Fazli, M., Dige, I., Christensen, L., Homøe, Preben, Tvede, M., Nyvad, B., Tolker-Nielsen, Tim, Givskov, Michael, Moser, Claus Ernst, Kirketerp-Møller, K., Johansen, Helle Krogh, Høiby, Niels, Jensen, Peter Østrup, Sørensen, Søren Johannes & Bjarnsholt, Thomas, 2010, In: FEMS Immunology and Medical Microbiology. 59, 3, p. 324-336 13 p.Research output: Contribution to journal › Review › Research › peer-review
- Published
An invisible workforce: biofilms in the soil
Burmølle, Mette, Kjøller, Annelise Helene & Sørensen, Søren Johannes, 2012, Microbial biofilms: current research and applications. Lear, G. & Lewis, G. D. (eds.). Caister Academic Press, p. 61-71 11 p.Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
Establishment and early succession of a multispecies biofilm composed of soil bacteria
Burmølle, Mette, Hansen, Lars Hestbjerg & Sørensen, Søren Johannes, 2007, In: Microbial Ecology. 54, 2, p. 352-62 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Type 3 fimbriae, encoded by the conjugative plasmid pOLA52, enhance biofilm formation and transfer frequencies in Enterobacteriaceae strains
Burmølle, Mette, Bahl, M. I., Jensen, L. B., Sørensen, Søren Johannes & Hansen, Lars Hestbjerg, 2008, In: Microbiology. 154, Pt 1, p. 187-95 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Biofilms in soil
Burmølle, Mette, Kjøller, Annelise Helene & Sørensen, Søren Johannes, 2011, Encyclopedia of agrophysics. Springer, p. 70-75 6 p. (Encyclopedia of Earth Sciences Series).Research output: Chapter in Book/Report/Conference proceeding › Encyclopedia chapter › Research › peer-review
- Published
Sequencing of IncX-plasmids suggests ubiquity of mobile forms of a biofilm-promoting gene cassette recruited from Klebsiella pneumoniae
Burmølle, Mette, Norman, A., Sørensen, Søren Johannes & Hansen, Lars Hestbjerg, 2012, In: PLOS ONE. 7, 7, 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Barley Rhizosphere Microbiome Transplantation: A Strategy to Decrease Susceptibility of Barley Grown in Soils With Low Microbial Diversity to Powdery Mildew
Bziuk, N., Maccario, Lorrie, Sørensen, Søren Johannes, Schikora, A. & Smalla, K., 2022, In: Frontiers in Microbiology. 13, 14 p., 830905.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Tillage shapes the soil and rhizosphere microbiome of barley - but not its susceptibility towards Blumeria graminis f. sp. hordei
Bziuk, N., Maccario, Lorrie, Douchkov, D., Lueck, S., Babin, D., Sørensen, Søren Johannes, Schikora, A. & Smalla, K., 2021, In: FEMS Microbiology Ecology. 97, 3, 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The treasure inside barley seeds: microbial diversity and plant beneficial bacteria
Bziuk, N., Maccario, Lorrie, Straube, B., Wehner, G., Sørensen, Søren Johannes, Schikora, A. & Smalla, K., 2021, In: Environmental Microbiomes. 16, 21 p., 20.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Conversion of cropland to forest increases soil CH4 oxidation and abundance of CH4 oxidizing bacteria with stand age
Bárcena, T. G., D'Imperio, Ludovica, Gundersen, Per, Vesterdal, Lars, Priemé, Anders & Christiansen, Jesper Riis, 2014, In: Applied Soil Ecology. 79, p. 49-58 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genome-wide patterns of nucleotide polymorphism in domesticated rice
Caicedo, A. L., Williamson, S. H., Hernandez, R. D., Boyko, A., Fledel-Alon, A., York, T. L., Polato, N. R., Olsen, K. M., Nielsen, Rasmus, McCouch, S. R., Bustamante, C. D. & Purugganan, M. D., 2007, In: PLoS Genetics. 3, 9, p. 1745-56 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Crispr-Cas Repurposed: Defense and Counter-defense on Mobile Genetic Elements
Camara, Sarah, 2024, Department of Biology, Faculty of Science, University of Copenhagen. 186 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
Bacteriophages suppress CRISPR–Cas immunity using RNA-based anti-CRISPRs
Camara, Sarah, Mayo-Muñoz, D., Russel, J., Fagerlund, R. D., Madsen, Jonas Stenløkke, Fineran, P. C., Sørensen, Søren Johannes & Pinilla Redondo, Rafael, 2023, In: Nature. 623, 7987, p. 601-607 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Supraglacial bacterial community structures vary across the Greenland ice sheet
Cameron, K. A., Stibal, M., Zarsky, J. D., Gözdereliler, E., Schostag, M. D. & Jacobsen, C. S., 2016, In: F E M S Microbiology Ecology. 92, 2, 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Physiological heterogeneities in microbial populations and implications for physical stress tolerance
Carlqvist, M., Lencastre Fernandes, R., Helmark, S., Heins, A., Neves Lundin, A. L., Sørensen, Søren Johannes, Gernaey, K. & Eliasson Lantz, A., 2012, In: Microbial Cell Factories. 11, 94, 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Effects of elevated atmospheric CO2, prolonged summer drought and temperature increase on N2O and CH4 fluxes in a temperate heathland
Carter, M. S., Ambus, Per Lennart, Albert, K. R., Larsen, Klaus Steenberg, Andersson, M., Priemé, Anders, van der Linden, L. & Beier, Claus, 2011, In: Soil Biology & Biochemistry. 43, 8, p. 1660-1670 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Optimizing protocols for extraction of bacteriophages prior to metagenomic analyses of phage communities in the human gut
Castro Mejia, J. L., Muhammed, Musemma Kedir, Kot, Witold, Neve, H., Franz, C. M. A. P., Hansen, L. H., Vogensen, Finn Kvist & Nielsen, Dennis Sandris, 2015, In: Microbiome. 3, 14 p., 64.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Reduced tillage, cover crops and organic amendments affect soil microbiota and improve soil health in Uruguayan vegetable farming systems
Cerecetto, V., Smalla, K., Nesme, Joseph, Garaycochea, S., Fresia, P., Sørensen, Søren Johannes, Babin, D. & Leoni, C., 2021, In: FEMS Microbiology Ecology. 97, 3, 14 p., fiab023.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The developing airway and gut microbiota in early life is influenced by age of older siblings
Christensen, E. D., Hjelmsø, M. H., Thorsen, Jonathan Jan Ilve, Shah, S., Redgwell, T., Poulsen, Christina Egeø, Trivedi, Urvish, Russel, J., Gupta, S., Chawes, Bo Lund Krogsgaard, Bønnelykke, Klaus, Sørensen, Søren Johannes, Rasmussen, Morten Arendt, Bisgaard, H. & Stokholm, Jakob, 2022, In: Microbiome. 10, 15 p., 106.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Growth rate of rhizosphere bacteria measured directly by the tritiated thymidine incorporation technique
Christensen, Henrik, Jensen, Dan Funck & Kjøller, Annelise Helene, 1989, In: Soil Biology and Biochemistry. 21, 1, p. 113-117Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Enhanced summer warming reduces fungal decomposer diversity and litter mass loss more strongly in dry than in wet tundra
Christiansen, C. T., Haugwitz, M. S., Priemé, Anders, Nielsen, C. S., Elberling, Bo, Michelsen, Anders, Grogan, P. & Blok, D., 2017, In: Global Change Biology. 23, 1, p. 406-420 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Fluoroquinolone resistance mechanisms in urinary tract pathogenic Escherichia coli isolated during rapidly increasing fluoroquinolone consumption in a low-use country
Christiansen, N., Nielsen, L., Jakobsen, L., Stegger, M., Hansen, Lars Hestbjerg & Frimodt-Moller, N., 2011, In: Microbial Drug Resistance. 17, 3, p. 395-406 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Tailings microbial community profile and prediction of its functionality in basins of tungsten mine
Chung, A. P., Coimbra, C., Farias, P., Francisco, R., Branco, R., Simão, F. V., Gomes, E., Pereira, A., Vila, M. C., Fiúza, A., Mortensen, M. S., Sørensen, Søren Johannes & Morais, P. V., 2019, In: Scientific Reports. 9, 13 p., 19596.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Human origins and ancient human DNA
Cooper, A., Rambaut, A., Macaulay, V., Willerslev, Eske, Hansen, Anders Johannes & Stringer, C., 2001, In: Science. 292, 5522, p. 1655-56Research output: Contribution to journal › Comment/debate › Research
- Published
Mining of unexplored habitats for novel chitinases - chiA as a helper gene proxy in metagenomics
Cretoiu, M. S., Kielak, A. M., Abu Al-Soud, W., Sørensen, Søren Johannes & van Elsas, J. D., 2012, In: Applied Microbiology and Biotechnology. 94, 5, p. 1347-1358 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Stichorkis - Synonomy, taxonomic notes
Cribb, P. & Rasmussen, Finn N., 2005, Genera Orchidacearum vol. 4 (Part one). Pridgeon, A. M., Cribb, P. J., Chase, M. W. & Rasmussen, F. N. (eds.). Oxford: Oxford University Press, Vol. 4. p. 483–487 4 p.Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research
- Published
Liparis - Synonomy, phylogenetics, taxonomic notes
Cribb, P. & Rasmussen, Finn N., 2005, Genera Orchidacearum vol. 4 (Part one). Pridgeon, A. M., Cribb, P. J., Chase, M. W. & Rasmussen, F. N. (eds.). Oxford: Oxford University Press, Vol. 4. p. 465-471 8 p.Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research
- Published
Metal-induced bacterial interactions promote diversity in river-sediment microbiomes
Cyriaque, V., Géron, A., Billon, G., Nesme, Joseph, Werner, J., Gillan, D. C., Sørensen, Søren Johannes & Wattiez, R., 2020, In: F E M S Microbiology Ecology. 96, 6, 12 p., fiaa076.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Selection and propagation of IncP conjugative plasmids following long-term anthropogenic metal pollution in river sediments
Cyriaque, V., Jacquiod, S. J. A., Riber, Leise, Abu Al-Soud, W., Gillan, D. C., Sørensen, Søren Johannes & Wattiez, R., 2020, In: Journal of Hazardous Materials. 382, 10 p., 121173.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Lead Drives Complex Dynamics of a Conjugative Plasmid in a Bacterial Community
Cyriaque, V., Madsen, Jonas Stenløkke, Fievez, L., Leroy, B., Hansen, Lars Hestbjerg, Bureau, F., Sørensen, Søren Johannes & Wattiez, R., 2021, In: Frontiers in Microbiology. 12, 14 p., 655903.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genetic barcoding of dark-spored myxomycetes (Amoebozoa): identification, evaluation and application of a sequence similarity threshold for species differentiation in NGS studies
Dahl, M. B., Brejnrod, A. D., Unterseher, M., Hoppe, T., Feng, Y., Novozhilov, Y., Sørensen, Søren Johannes & Schnittler, M., Mar 2018, In: Molecular Ecology Resources. 18, 2, p. 306-318 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Warmer winters result in reshaping of the European beech forest soil microbiome (bacteria, archaea and fungi) - With potential implications for ecosystem functioning
Dahl, M. B., Kreyling, J., Petters, S., Wang, H., Mortensen, M. S., Maccario, Lorrie, Sørensen, Søren Johannes, Urich, T. & Weigel, R., 2023, In: Environmental Microbiology. 25, 6, 18 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Warming, shading and a moth outbreak reduce tundra carbon sink strength dramatically by changing plant cover and soil microbial activity
Dahl, M. B., Priemé, Anders, Brejnrod, A. D., Brusvang, P., Lund, M., Nymand, J., Kramshøj, M., Ro-Poulsen, Helge & Haugwitz, M. S., 22 Nov 2017, In: Scientific Reports. 7, 13 p., 16035.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Different Degrees of Niche Differentiation for Bacteria, Fungi, and Myxomycetes Within an Elevational Transect in the German Alps
Dahl, M. B., Brejnrod, A. D., Russel, J., Sørensen, Søren Johannes & Schnittler, M., 2019, In: Microbial Ecology. 78, 3, p. 764-780Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Supplerende noter til Kormofyternes Taxonomi: Angiospermae
Dahlgren, R., Frederiksen, S., Friis, Ib & Rasmussen, Finn N., 1990, 2. ed. Botanisk Laboratorium, Københavns Universitet. 70 p.Research output: Book/Report › Compendium/lecture notes › Education
- Published
Monocotyledon Evolution - Characters and Phylogentic Estimation
Dahlgren, R. & Rasmussen, Finn N., 1983, Evolutionary Biology. Hecht, M. K., Wallace, B. & Prance, G. T. (eds.). New York, Vol. 16. p. 255-395 141 p.Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research
- Published
Elevated CO2 increases fungal-based micro-foodwebs in soils of contrasting plant species
Dam, M., Bergmark, L. & Vestergård, M., 2017, In: Plant and Soil. 415, 1-2, p. 549–561 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A safflower oil based high-fat/high-sucrose diet modulates the gut microbiota and liver phospholipid profiles associated with early glucose intolerance in the absence of tissue inflammation
Danneskiold-Samsøe, Niels Banhos, Andersen, D., Radulescu, I. D., Hansen, Ann Normann, Brejnrod, A. D., Kragh, M., Madsen, T., Nielsen, C., Josefsen, K. E., Fretté, X., Fjære, E., Madsen, L., Hellgren, L. I., Brix, S. & Kristiansen, Karsten, May 2017, In: Molecular Nutrition & Food Research. 61, 5, 11 p., 1600528.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Metagenomic analyses reveal no differences in genes involved in cellulose degradation under different tillage treatments
De Vries, M., Schöler, A., Ertl, J., Xu, Z. & Schloter, M., 2015, In: FEMS Microbiology Ecology. 91, 7, p. 1-10 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Exploring the complex response to linuron of bacterial communities from biopurification systems by means of cultivation-independent methods
Dealtry, S., Nour, E. H., Holmsgaard, P. N., Ding, G. C., Weichelt, V., Dunon, V., Heuer, H., Hansen, Lars Hestbjerg, Sørensen, Søren Johannes, Springael, D. & Smalla, K., 2016, In: F E M S Microbiology Ecology. 92, 2, 12 p., fiv157.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Shifts in abundance and diversity of mobile genetic elements after the introduction of diverse pesticides into an on-farm biopurification system over the course of a year
Dealtry, S., Holmsgaard, P. N., Dunon, V., Jechalke, S., Ding, G., Kroegerrecklenfort, E., Heuer, H., Hansen, Lars Hestbjerg, Springael, D., Zuehlke, S., Sørensen, Søren Johannes & Smalla, K., 2014, In: Applied and Environmental Microbiology. 80, 13, p. 4012-4020 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Long-term immersion of compostable plastics in marine aquarium: Microbial biofilm evolution and polymer degradation
Delacuvellerie, A., Brusselman, A., Cyriaque, V., Benali, S., Moins, S., Raquez, J. M., Gobert, S. & Wattiez, R., 2023, In: Marine Pollution Bulletin. 189, 10 p., 114711.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
It is elemental: soil nutrient stoichiometry drives bacterial diversity
Delgado-Baquerizo, M., Reich, P. B., Khachane, A. N., Campbell, C. D., Thomas, N., Freitag, T. E., Abu Al-Soud, W., Sørensen, Søren Johannes, Bardgett, R. D. & Singh, B. K., 2017, In: Environmental Microbiology. 19, 3, p. 1176-1188 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Green fluorescent protein (GFP) leakage from microbial biosensors provides useful information for the evaluation of the scale-down effect
Delvigne, F., Brognaux, A., Francis, F., Twizere, J., Gorret, N., Sørensen, Søren Johannes & Thonart, P., 2011, In: Biotechnology Journal. 6, 8, p. 968-978 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Metabolic variability in bioprocessing: implications of microbial phenotypic heterogeneity
Delvigne, F., Zune, Q., Lara, A. R., Abu Al-Soud, W. & Sørensen, Søren Johannes, 2014, In: Trends in Biotechnology. 32, 12, p. 608-616 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Applicability of GFP microbial whole cell biosensors to bioreactor operations: mathematical modeling and related experimental tools
Delvigne, F., Brognaux, A., Gorret, N., Sørensen, Søren Johannes, Michel, C. & Thonart, P., Jul 2011, Biosensors - Emerging Materials and Applications. Serra, P. A. (ed.). Rijeka, Croatia: InTech, p. 601-630 30 p.Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
The last Viking King: A royal maternity case solved by ancient DNA analysis
Dissing, J., Binladen, J., Hansen, Anders Johannes, Sejrsen, B., Willerslev, Eske & Lynnerup, Niels, 2007, In: Forensic Science International. 166, 1, p. 21-7Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Extracting DNA from soil or directly from isolated nematodes indicate dissimilar community structure for Europe-wide forest soils
Donhauser, J., Briones, M. J. I., Mikola, J., Jones, D. L., Eder, R., Filser, J., Frossard, A., Krogh, P. H., Sousa, J. P., Cortet, J., Desie, E., Domene, X., Djuric, S., Hackenberger, D., Jimenez, J. J., Iamandei, M., Rissmann, C., Schmidt, O., Shanskiy, M., Silfver, T. & 4 others, , 2023, In: Soil Biology and Biochemistry. 185, 16 p., 109154.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The fate of mercury in Arctic terrestrial and aquatic ecosystems, a review
Douglas, T. A., Loseto, L. L., Macdonald, R. W., Outridge, P., Dommergue, A., Poulain, A., Amyot, M., Barkay, T., Berg, T., Chételat, J., Constant, P., Evans, M., Ferrari, C., Gantner, N., Johnson, M. S., Kirk, J., Kroer, N., Larose, C., Lean, D., Nielsen, T. G. & 7 others, , 2012, In: Environmental Chemistry (Online). 9, 4, p. 321-355 35 p.Research output: Contribution to journal › Review › Research › peer-review
- Published
Methanotrophs, methanogens and microbial community structure in livestock slurry surface crusts
Duan, Y. F., Abu Al-Soud, W., Brejnrod, A. D., Sørensen, Søren Johannes, Elsgaard, L., Petersen, S. O. & Boon, N., 2014, In: Journal of Applied Microbiology. 117, 4, p. 1066-1078 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Gut microbiota in human adults with type 2 diabetes differs from non-diabetic adults
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Sequence and comparative analysis of Leuconostoc dairy bacteriophages
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Extreme emission of n2o from tropical wetland soil (pantanal, South America)
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Optimizing cleaning strategies for biofouling in reverse osmosis membrane systems: A comparative study using a self-formed instrument
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Interphylum dissemination of NDM-5-positive plasmids in hospital wastewater from Fuzhou, China: a single-centre, culture-independent, plasmid transmission study
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Using Nanopore Sequencing Deciphering Antibiotic Resistance Dissemination In The Wastewater Systems
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