Microbiology

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  1. Published

    Bromadiolone resistance does not respond to absence of anticoagulants in experimental populations of Norway rats.

    Heiberg, A. C., Leirs, H. & Siegismund, Hans Redlef, 2003, Rats, Mice and People: Rodent Biology and Management. Singleton, G. R., Hinds, L. A., Krebs, C. J. & Spratt, D. M. (eds.). Canberra, Vol. 96. p. 461-464

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research

  2. Published

    Quantitative Flow Cytometry to Understand Population Heterogeneity in Response to Changes in Substrate Availability in Escherichia coli and Saccharomyces cerevisiae Chemostats

    Heins, A., Johanson, T., Han, S., Lundin, L., Carlquist, M., Gernaey, K. V., Sørensen, Søren Johannes & Lantz, A. E., 2019, In: Frontiers in Bioengineering and Biotechnology. 7, 15 p., 187.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    The effect of acetate on population heterogeneity in different cellular characteristics of Escherichia coli in aerobic batch cultures

    Heins, A., Lundin, L., Nunes, I., Gernaey, K. V., Sørensen, Søren Johannes & Eliasson Lantz, A., 2019, In: Biotechnology Progress. 35, 3, e2796.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Relationship between three measures of genetic differentiation GST, DEST and G'ST: how wrong have we been?

    Heller, Rasmus & Siegismund, Hans Redlef, 2009, In: Molecular Ecology. 18, 10, p. 2080-2083

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Mid-Holocene decline in African buffalos inferred from Bayesian coalescence-based analyses of microsatellites and mitochondrial DNA

    Heller, Rasmus, Lorenzen, Eline, Okello, J. B. A., Masembe, C. & Siegismund, Hans Redlef, 2008, In: Molecular Ecology. 17, 22, p. 4845–4858

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Kafferbøflens slægtshistorie - Når klimaet dræber

    Heller, Rasmus, 2007, In: Naturens Verden. 91, 1, p. 34-40 7 p.

    Research output: Contribution to journal › Journal article › Research

  7. Published

    Population genetic analysis of shotgun assemblies of genomic sequences from multiple individuals

    Hellmann, I., Mang, Y., Gu, Z., Li, P., de la Vega, F. M., Clark, A. G. & Nielsen, Rasmus, 2008, In: Genome Research. 18, 7, p. 1020-9 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. E-pub ahead of print

    Antibiotic implant irrigation and deep infection: A retrospective study of 1508 patients undergoing breast reconstruction with implants

    Hemmingsen, Mathilde Nejrup, Bennedsen, A. K., Kullab, R. B., Weltz, T. K., Ørholt, M., Norlin, C. B., Kalstrup, J., Bredgaard, R., Sørensen, Søren Johannes, Bjarnsholt, Thomas, Hølmich, Lisbet Rosenkrantz, Damsgaard, T. E., Vester-Glowinski, Peter Viktor & Herly, Mikkel, 2024, (E-pub ahead of print) In: Plastic and Reconstructive Surgery. 26 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Prophylactic treatment of breast implants with a solution of gentamicin, vancomycin and cefazolin antibiotics for women undergoing breast reconstructive surgery: protocol for a randomised, double-blind, placebo-controlled trial (The BREAST-AB trial)

    Hemmingsen, M. N., Larsen, A., Weltz, T. K., Ørholt, M., Wiberg, S., Bennedsen, A. K., Bille, C., Carstensen, L. F., Jensen, L. T., Bredgaard, R., Koudahl, V., Schmidt, Volker-Jürgen, Vester-Glowinski, Peter Viktor, Hølmich, Lisbet Rosenkrantz, Sørensen, Søren Johannes, Bjarnsholt, Thomas, Damsgaard, Tine M Engberg & Herly, Mikkel, 2022, In: BMJ Open. 12, 9, p. e058697

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Pharmacokinetics of Locally Applied Antibiotic Prophylaxis for Implant-Based Breast Reconstruction

    Hemmingsen, Mathilde Nejrup, Bennedsen, A. K., Kullab, R. B., Norlin, C. B., Ørholt, M., Larsen, A., Bue, M., Lichtenberg, Mads, Hertz, Frederik Boëtius, Damsgaard, T. E., Vester-Glowinski, Peter Viktor, Sørensen, Søren Johannes, Bjarnsholt, Thomas & Herly, Mikkel, 2023, In: JAMA network open. 6, 12, 11 p., E2348414.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Biofilm cultivation facilitates coexistence and adaptive evolution in an industrial bacterial community

    Henriksen, N. N. S. E., Hansen, Mads Frederik, Kiesewalter, Heiko T., Russel, J., Nesme, Joseph, Foster, K. R., Svensson, B., Øregaard, G., Herschend, J. & Burmølle, Mette, 2022, In: npj Biofilms and Microbiomes. 8, 8 p., 59.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Demographic histories and patterns of linkage disequilibrium in Chinese and Indian rhesus macaques

    Hernandez, R. D., Hubisz, M. J., Wheeler, D. A., Smith, D. G., Ferguson, B., Rogers, J., Nazareth, L., Indap, A., Bourquin, T., McPherson, J., Muzny, D., Gibbs, R., Nielsen, Rasmus & Bustamante, C. D., 2007, In: Science. 316, 5822, p. 240-3 3 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Genome sequence of Kocuria palustris strain W4

    Herschend, J., Raghupathi, P. K., Røder, Henriette Lyng, Sørensen, Søren Johannes & Burmølle, Mette, 2016, In: Genome Announcements. 4, 2, 1 p., e00074-16.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    A meta-proteomics approach to study the interspecies interactions affecting microbial biofilm development in a model community

    Herschend, J., Damholt, Z. B. V., Marquard, A. M., Svensson, B., Sørensen, Søren Johannes, Hägglund, Per Mårten & Burmølle, Mette, 28 Nov 2017, In: Scientific Reports. 7, 13 p., 16483.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    In Vitro Community Synergy between Bacterial Soil Isolates Can Be Facilitated by pH Stabilization of the Environment

    Herschend, J., Koren, K., Røder, Henriette Lyng, Brejnrod, A., Kühl, Michael & Burmølle, Mette, 2018, In: Applied and Environmental Microbiology. 84, 21, e01450.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    In vitro community synergy between bacterial soil isolates can be facilitated by pH stabilisation of the environment.

    Herschend, J., Koren, K., Røder, Henriette Lyng, Brejnrod, A. D., Kühl, Michael & Burmølle, Mette, 2018, In: Applied and Environmental Microbiology. 84, 21, p. 1-15 e01450-18.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Metabolic Profiling of Interspecies Interactions During Sessile Bacterial Cultivation Reveals Growth and Sporulation Induction in Paenibacillus amylolyticus in Response to Xanthomonas retroflexus

    Herschend, J., Ernst, M., Koren, K., Melnik, A. V., da Silva, R. R., Røder, Henriette Lyng, Damholt, Z. B. V., Hägglund, Per Mårten, Svensson, B., Sørensen, Søren Johannes, Kühl, Michael, Dorrestein, P. C. & Burmølle, Mette, 2022, In: Frontiers in Cellular and Infection Microbiology. 12, 17 p., 805473.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Draft genome sequences of two Kocuria isolates, K. salsicia G1 and K. rhizophila G2, isolated from a slaughterhouse in Denmark

    Herschend, J., Raghupathi, P. K., Røder, Henriette Lyng, Sørensen, Søren Johannes & Burmølle, Mette, 2016, In: Genome Announcements. 4, 2, 2 p., e00075-16.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Genome sequence of Arthrobacter antarcticus strain W2, isolated from a slaughterhouse

    Herschend, J., Raghupathi, P. K., Røder, Henriette Lyng, Sørensen, Søren Johannes & Burmølle, Mette, 2016, In: Genome Announcements. 4, 2, 2 p., e00073-16.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Unravelling the mechanisms of bacterial interactions in model communities

    Herschend, J., 2016, Department of Biology, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  21. Published

    Integration within the Felsenstein equation for improved Markov chain Monte Carlo methods in population genetics

    Hey, J. & Nielsen, Rasmus, 2007, In: Proceedings of the National Academy of Science of the United States of America. 104, 8, p. 2785-90 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Prenatal dietary supplements influence the infant airway microbiota in a randomized factorial clinical trial

    Hjelmsø, M. H., Shah, S. A., Thorsen, Jonathan Jan Ilve, Rasmussen, Morten Arendt, Vestergaard, G., Mortensen, M. S., Brejnrod, A., Brix, S., Chawes, Bo Lund Krogsgaard, Bønnelykke, Klaus, Sørensen, Søren Johannes, Stokholm, Jakob & Bisgaard, H., 2020, In: Nature Communications. 11, 10 p., 426.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    High-resolution melt analysis for rapid comparison of bacterial community compositions

    Hjelmsø, M. H., Hansen, Lars Hestbjerg, Bælum, J., Feld, L., Holben, W. E. & Jacobsen, C. S., 2014, In: Applied and Environmental Microbiology. 80, 12, p. 3568-3575 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Identification of genes differentially expressed in testes containing carcinoma in situ

    Høi-Hansen, Christina Engel, Nielsen, J. E., Almstrup, Kristian, Hansen, M. A., Skakkebæk, Niels Erik, Rajpert-DeMeyts, E. & Leffers, H., Jun 2004, In: Molecular Human Reproduction. 10, 6, p. 423-431 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Autophagic components contribute to hypersensitive cell death in Arabidopsis

    Hofius, D., Schultz-Larsen, T., Joensen, J., Tsitsigiannis, D. I., Petersen, N. H. T., Mattsson, O., Jørgensen, L. B., Jones, J. D. G., Mundy, J. & Petersen, Morten, 2009, In: Cell. 137, 4, p. 773-83 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    Context dependency and saturating effects of loss of rare soil microbes on plant productivity

    Hol, W. H. G., de Boer, W., de Hollander, M., Kuramae, E. E., Meisner, A. & van der Putten, W. H., 2015, In: Frontiers in Plant Science. 6, 10 p., 485.

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    Bias in bacterial diversity as a result of Nycodenz extraction from bulk soil

    Holmsgaard, P. N., Norman, A., Hede, S. C., Poulsen, P. H. B., Al-Soud, W. A., Hansen, Lars Hestbjerg & Sørensen, Søren Johannes, 14 Jul 2011, In: Soil Biology & Biochemistry. 43, 10, p. 2152-2159 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    Bias in Nycodenz extraction from bulk soil analysed by amplicon high throughput sequencing

    Holmsgaard, P. N., Poulsen, P. H. B., Hede, S., Abu Al-Soud, W., Hansen, Lars Hestbjerg & Sørensen, Søren Johannes, Aug 2010.

    Research output: Contribution to conference › Poster › Research

  29. Published

    Simultaneous pyrosequencing of the 16S rRNA, IncP-1 trfA, and merA genes

    Holmsgaard, P. N., Sørensen, Søren Johannes & Hansen, Lars Hestbjerg, 2013, In: Journal of Microbiological Methods. 95, 2, p. 280-284 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    Second generation sequencing for elucidating the diversity of bacteria and plasmids in soil

    Holmsgaard, P. N., 2013, Department of Biology, Faculty of Science, University of Copenhagen. 160 p.

    Research output: Book/Report › Ph.D. thesis › Research

  31. Published

    Response of the bacterial community in an on-farm biopurification system, to which diverse pesticides are introduced over an agricultural season

    Holmsgaard, P. N., Dealtry, S., Dunon, V., Heuer, H., Hansen, Lars Hestbjerg, Springael, D., Smalla, K., Riber, Leise & Sørensen, Søren Johannes, Oct 2017, In: Environmental Pollution. 229, p. 854-862 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    Bias in Nycodenz extraction from bulk soil analysed by amplicon high throughput sequencing

    Holmsgaard, P. N., Poulsen, P., Hede, S., Abu Al-Soud, W., Hansen, Lars Hestbjerg & Sørensen, Søren Johannes, Nov 2010.

    Research output: Contribution to conference › Poster › Research

  33. Published

    Long-term and realistic global change manipulations had low impact on diversity of soil biota in temperate heathland

    Holmstrup, M., Damgaard, C., Schmidt, Inger Kappel, Arndal, M. F., Beier, Claus, Mikkelsen, T. N., Ambus, Per Lennart, Larsen, Klaus Steenberg, Pilegaard, K., Michelsen, Anders, Andresen, L. C., Haugwitz, M. S., Bergmark, L., Priemé, Anders, Zaitsev, A. S., Georgieva, S., Dam, M., Vestergård, M. & Christensen, Søren, 2017, In: Scientific Reports. 7, 11 p., 41388.

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    Enhanced Antibiotic Tolerance of an In Vitro Multispecies Uropathogen Biofilm Model, Useful for Studies of Catheter‐Associated Urinary Tract Infections

    Hou, J., Wang, L., Alm, M., Thomsen, P., Monsen, T., Ramstedt, M. & Burmølle, Mette, 2022, In: Microorganisms. 10, 6, 15 p., 1207.

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    The use of X-ray diffraction for analyzing biomodification of crystalline cellulose by wood decay fungi

    Howell, C., Hastrup, A. C. S. & Jellison, J., 2007, International Research Group on Wood Preservation: 38th Annual Meeting. IRG/WP 07-10622 ed. IRG, Vol. IRG/WP 07. 16 p.

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research

  36. Published

    Effects of hot water extraction and fungal decay on wood crystalline cellulose structure

    Howell, C., Hastrup, A. C. S., Jara, R., Larsen, F. H., Goodell, B. & Jellison, J., 2011, In: Cellulose. 18, 5, p. 1179-1190 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    Temporal changes in wood crystalline cellulose during degradation by brown rot fungi

    Howell, C., Hastrup, A. C. S., Goodell, B. & Jellison, J., 2009, In: International Biodeterioration and Biodegradation. 63, 4, p. 414-419

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    The effect of early probiotic exposure on the preterm infant gut microbiome development

    Hui, Y., Smith, Birgitte, Mortensen, M. S., Krych, Lukasz, Sørensen, Søren Johannes, Greisen, Gorm, Krogfelt, K. A. & Nielsen, Dennis Sandris, 2021, In: Gut Microbes. 13, 1, 15 p., 1951113.

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    Donor-dependent fecal microbiota transplantation efficacy against necrotizing enterocolitis in preterm pigs

    Hui, Y., Vestergaard, G., Deng, Ling, Kot, Witold, Thymann, Thomas, Brunse, Anders & Nielsen, Dennis Sandris, 2022, In: npj Biofilms and Microbiomes. 8, 1, 12 p., 48.

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    Bacterial chromosomal mobility via lateral transduction exceeds that of classical mobile genetic elements

    Humphrey, S., Fillol-Salom, A., Quiles-Puchalt, N., Ibarra Chavez, Rodrigo, Haag, A. F., Chen, J. & Penadés, J. R., 2021, In: Nature Communications. 12, 13 p., 6509.

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    A mechanism for ParB-dependent waves of ParA, a protein related to DNA segregation during cell division in prokaryotes

    Hunding, A., Gerdes, K. & Charbon, G. E., 2003, In: Journal of Molecular Biology. 329, 1, p. 35-43 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    Genetic subspecies diversity of the chimpanzee CD4 virus-receptor gene

    Hvilsom, C., Carlsen, F., Siegismund, Hans Redlef, Corbet, S., Nerrienet, E. & Fomsgaard, A., 2008, In: Genomics. 92, 5, p. 322-328 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    Structure and genome organization of AFV2, a novel archaeal lipothrixvirus with unusual terminal and core structures

    Häring, M., Vestergaard, G. A., Brügger, K., Rachel, R., Garrett, Roger Antony & Prangishvili, D., 2005, In: Journal of Bacteriology. 187, 11, p. 3855-8 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    Metamorphosis in balanomorphan, pedunculated, and parasitic barnacles: a video-based analysis

    Høeg, Jens Thorvald, Maruzzo, D., Okano, K., Glenner, Henrik & Chan, B. K. K., 2012, In: Integrative and Comparative Biology. 52, 3, p. 337-347 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    Phage satellites and their emerging applications in biotechnology

    Ibarra Chavez, Rodrigo, Hansen, Mads Frederik, Pinilla Redondo, Rafael, Seed, K. D. & Trivedi, Urvish, 2021, In: FEMS Microbiology Reviews. 45, 6, 20 p., fuab031.

    Research output: Contribution to journal › Review › Research › peer-review

  46. Published

    Phage-Inducible Chromosomal Islands as a Diagnostic Platform to Capture and Detect Bacterial Pathogens

    Ibarra Chavez, Rodrigo, Reboud, J., Penadés, J. R. & Cooper, J. M., 2023, In: Advanced Science. 10, 24, 11 p., 2301643.

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    Phage-inducible chromosomal islands promote genetic variability by blocking phage reproduction and protecting transductants from phage lysis

    Ibarra Chavez, Rodrigo, Brady, A., Chen, J., Penadés, J. R. & Haag, A. F., 2022, In: PLOS Genetics. 18, 3, 18 p., e1010146.

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    Presence of Pathogenic bacteria and viruses in the daycare environment

    Ibfelt, T., Engelund, E. H., Permin, A., Madsen, Jonas Stenløkke, Schultz, A. C. & Andersen, Leif Percival, 2015, In: Journal of Environmental Health. 78, 3, p. 24-29 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    Comparative analysis of bacterial communities in a potato field as determined by pyrosequencing

    Inceoglu, Ö., Abu Al-Soud, W., Salles, J. F., Semenov, A. V. & van Elsas, J. D., 1 Aug 2011, In: P L o S One. 6, 8, p. e23321 (1-10) 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    Comparative genomic analysis reveals ecological differentiation in the genus Carnobacterium

    Iskandar, C. F., Borges, F., Taminiau, B., Daube, G., Zagorec, M., Remenant, B., Leisner, Jørgen, Hansen, M. A., Sørensen, Søren Johannes, Mangavel, C., Cailliez-Grimal, C. & Revol-Junelles, A., 2017, In: Frontiers in Microbiology. 8, 14 p., 357.

    Research output: Contribution to journal › Journal article › Research › peer-review

  51. Published

    Über die Bestäubung von Ophrys speculum Link auf Mallorca

    Jacobsen, Niels & Rasmussen, Finn N., 1976, In: Orchidee. 27, p. 64-66 3 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  52. Published

    Vegetationen i kridtbruddet "Dania" ved Mariager Fjord

    Jacobsen, Niels, Larsen, H. & Rasmussen, Finn N., 1976, In: Botanisk Tidsskrift. 70, p. 184-187 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  53. Published

    Genotypic variations and interspecific interactions modify gene expression and biofilm formation of Xanthomonas retroflexus

    Jacquiod, S., Olsen, N. M. C., Blouin, M., Røder, Henriette Lyng & Burmølle, Mette, 2023, In: Environmental Microbiology. 25, 12, 3225-3238.

    Research output: Contribution to journal › Journal article › Research › peer-review

  54. Published

    Artificial selection of stable rhizosphere microbiota leads to heritable plant phenotype changes

    Jacquiod, S., Spor, A., Wei, S., Munkager, V., Bru, D., Sørensen, Søren Johannes, Salon, C., Philippot, L. & Blouin, M., 2022, In: Ecology Letters. 25, 1, p. 189-201 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  55. Published

    Long-term soil metal exposure impaired temporal variation in microbial metatranscriptomes and enriched active phages

    Jacquiod, S., Nunes, I., Brejnrod, A., Hansen, M. A., Holm, Peter Engelund, Johansen, A., Brandt, Kristian Koefoed, Priemé, Anders & Sørensen, Søren Johannes, 2018, In: Microbiome. 6, p. 1-14 223.

    Research output: Contribution to journal › Journal article › Research › peer-review

  56. Published

    Deciphering conjugative plasmid permissiveness in wastewater microbiomes

    Jacquiod, S. J. A., Brejnrod, A. D., Milani, S. M., Abu Al-Soud, W., Sørensen, Søren Johannes & Riber, Leise, Jul 2017, In: Molecular Ecology. 26, 13, p. 3556-3571 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  57. Published

    Long-term industrial metal contamination unexpectedly shaped diversity and activity response of sediment microbiome

    Jacquiod, S. J. A., Cyriaque, V., Riber, Leise, Al-Soud, W. A., Gillan, D. C., Wattiez, R. & Sørensen, Søren Johannes, 15 Feb 2018, In: Journal of Hazardous Materials. 344, p. 299-307 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  58. Published

    Metagenomes provide valuable comparative information on soil microeukaryotes

    Jacquiod, S. J. A., Stenbæk, J., Santos, S. S., Winding, A., Sørensen, Søren Johannes & Priemé, Anders, 2016, In: Research in Microbiology. 167, 5, p. 436-450 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  59. Published

    Bacterial community analysis for investigating bacterial transfer from tonsils to the pig carcass

    Jakobsen, A. M., Bahl, M. I., Buschhardt, T., Hansen, T. B., Abu Al-Soud, W., Brejnrod, A. D., Sørensen, Søren Johannes, Nesbakken, T. & Aabo, S., 2019, In: International Journal of Food Microbiology. 295, p. 8-18 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  60. Published

    Characterisation, dissemination and persistence of gentamicin resistant Escherichia coli from a Danish university hospital to the waste water environment

    Jakobsen, L., Sandvang, D., Hansen, Lars Hestbjerg, Bagger-Skjøt, L., Westh, Henrik T., Jørgensen, C., Hansen, D. S., Pedersen, B. M., Monnet, D. L., Frimodt-Møller, N., Sørensen, Søren Johannes & Hammerum, A. M., 2008, In: Environment International. 34, 1, p. 108-15 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  61. Published

    Complete genome sequence of the cystic fibrosis pathogen Achromobacter xylosoxidans NH44784-1996 complies with important pathogenic phenotypes

    Jakobsen, T. H., Hansen, M. A., Jensen, P. Ø., Hansen, L., Riber, L., Cockburn, A. P. I., Kolpen, M., Hansen, C. R., Ridderberg, W., Eickhardt-Sørensen, S. R., Hansen, M., Kerpedjiev, P., Alhede, M., Qvortrup, K., Burmølle, M., Moser, C. E., Kühl, M., Ciofu, O., Givskov, M., Sørensen, S. J. & 2 others, Høiby, Niels & Bjarnsholt, Thomas, 2013, In: P L o S One. 8, 7, 17 p., e68484.

    Research output: Contribution to journal › Journal article › Research › peer-review

  62. Published

    Applications of the GFP reporter genes for ecological studies of fungal biocontrol agents.

    Jensen, Dan Funck, Jensen, B., Mikkelsen, L., Sarrocco, S., Lubeck, M. & Knudsen, I. M. B., 2003, In: Phytopathology.

    Research output: Contribution to journal › Journal article › Research

  63. Published

    Population genetics of the native caribou (Rangifer tarandus groenlandicus) and the semi-domestic reindeer (Rangifer tarandus tarandus) in Southwestern Greenland: evidence of introgression

    Jepsen, B. I., Siegismund, Hans Redlef & Fredholm, Merete, 2002, In: Conservation Genetics. 3, 4, p. 401-409

    Research output: Contribution to journal › Journal article › Research › peer-review

  64. Published

    Plasmid metagenomics reveals multiple antibiotic resistance gene classes among the gut microbiomes of hospitalised patients

    Jitwasinkul, T., Suriyaphol, P., Tangphatsornruang, S., Hansen, M. A., Hansen, Lars Hestbjerg, Sørensen, Søren Johannes, Permpikul, C., Rongrungruang, Y. & Tribuddharat, C., 2016, In: Journal of Global Antimicrobial Resistance. 6, p. 57-66 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  65. Published

    Pollen size in Hordeum L.: correlation between size, ploidy level, and breeding system

    Johansen, B. B. & Bothmer, R. V., 1994, In: Sexual Plant Reproduction. 7, p. 259-263

    Research output: Contribution to journal › Journal article › Research › peer-review

  66. Published

    In Situ PCR on Plant Material with Sub-Cellular Resolution

    Johansen, B. B., 1997, In: Annals of Botany. 80 (5), p. 697-700

    Research output: Contribution to journal › Journal article › Research › peer-review

  67. Published

    Eugen Warming i Lagoa Santa

    Johansen, B. B., 1992, In: Orkideer. 1, p. 29-33

    Research output: Contribution to journal › Journal article › Communication

  68. Published

    Nordens sjældne orkideer

    Johansen, B. B., 1987, In: Illustreret Videnskab. 10, p. 44-47

    Research output: Contribution to journal › Journal article › Communication

  69. Published

    Incompatibility in Dendrobium

    Johansen, B. B., 1990, In: Botanical Journal of the Linnean Society. 103, p. 165-196

    Research output: Contribution to journal › Journal article › Research › peer-review

  70. Published

    Distribution of intra membrane particles in the pollen tube plasma membrane of Dendrobium secundum

    Johansen, B. B., 1993, In: Lindleyana. p. 9-14

    Research output: Contribution to journal › Journal article › Research › peer-review

  71. Published

    Unvereträglichkeit bei der Bestäubung von Dendrobien

    Johansen, B. B., 1993, In: Die Orchidee. p. 242-246

    Research output: Contribution to journal › Journal article › Research › peer-review

  72. Published

    Warmingia margaritaceae sp. nov. from Costa Rica and a review of the genus

    Johansen, B. B., 1992, In: Lindleyana. 7, 4, p. 194-198

    Research output: Contribution to journal › Journal article › Research › peer-review

  73. Published

    Does DAPI detect cytoplasmic DNA?

    Johansen, B. B., Seberg, Ole, Petersen, G. & Arctander, P., 1995, In: American Journal of Botany. 82, 10, p. 1215-1219

    Research output: Contribution to journal › Journal article › Research › peer-review

  74. Published

    Digital microscopy and image analysis

    Johansen, B. B. & Rasmussen, Finn N., 1995, 1 ed. 15 p.

    Research output: Book/Report › Compendium/lecture notes › Education

  75. Published

    Centenarians have a diverse gut virome with the potential to modulate metabolism and promote healthy lifespan

    Johansen, Joachim, Atarashi, K., Arai, Y., Hirose, N., Sørensen, Søren Johannes, Vatanen, T., Knip, M., Honda, K., Xavier, R. J., Rasmussen, Simon & Plichta, D. R., 2023, In: Nature Microbiology. 8, p. 1064-1078 18 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  76. Published

    Genome binning of viral entities from bulk metagenomics data

    Johansen, Joachim, Plichta, D. R., Nissen, J. N., Jespersen, Marie Louise, Shah, S. A., Deng, Ling, Stokholm, Jakob, Bisgaard, H., Nielsen, Dennis Sandris, Sørensen, Søren Johannes & Rasmussen, Simon, 2022, In: Nature Communications. 13, 12 p., 965.

    Research output: Contribution to journal › Journal article › Research › peer-review

  77. Published

    Ancient bacteria show evidence of DNA repair.

    Johnson, S. S., Hebsgaard, M. B., Christensen, T. R., Mastepanov, M., Nielsen, Rasmus, Munch, K., Brand, T., Gilbert, M Thomas P, Zuber, M. T., Bunce, M., Rønn, Regin, Gilichinsky, D., Froese, D. & Willerslev, Eske, 2007, In: Proceedings of the National Academy of Science of the United States of America. 104, 36, p. 14401-5 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  78. Published

    Autogenic succession and deterministic recovery following disturbance in soil bacterial communities

    Jurburg, S. D., Nunes, I. M., Stegen, J. C., Le Roux, X., Priemé, Anders, Sørensen, Søren Johannes & Salles, J. F., 6 Apr 2017, In: Scientific Reports. 7, 11 p., 45691.

    Research output: Contribution to journal › Journal article › Research › peer-review

  79. Published

    Legacy Effects on the Recovery of Soil Bacterial Communities from Extreme Temperature Perturbation

    Jurburg, S. D., Nunes, I. M., Brejnrod, A. D., Jacquiod, S. J. A., Priemé, Anders, Sørensen, Søren Johannes, Van Elsas, J. D. & Salles, J. F., 2017, In: Frontiers in Microbiology. 8, 13 p., 1832.

    Research output: Contribution to journal › Journal article › Research › peer-review

  80. Published

    Complete nucleotide sequence of the self-transmissible TOL plasmid pD2RT provides new insight into arrangement of toluene catabolic plasmids

    Jutkina, J., Hansen, Lars Hestbjerg, Li, L., Heinaru, E., Vedler, E., Joesaar, M. & Heinaru, A., Jan 2013, In: Plasmid. 70, 3, p. 393-405 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  81. Published

    Temporal trends in N2O flux dynamics in a Danish wetland – effects of plant-mediated gas transport of N2O and O2 following changes in water level and soil mineral-N availability

    Jørgensen, C. J., Struwe, Sten & Elberling, Bo, 2012, In: Global Change Biology. 18, 1, p. 210-222 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  82. Published

    Plasmids, viruses, and other circular elements in rat gut

    Jørgensen, T. S., Hansen, M. A., Xu, Z., Tabak, M. A., Sørensen, Søren Johannes & Hansen, Lars Hestbjerg, 2017, Cold Spring Harbor Laboratory Press, 30 p.

    Research output: Working paper

  83. Published

    Current strategies for mobilome research

    Jørgensen, T. S., Kiil, A. S., Hansen, M. A., Sørensen, Søren Johannes & Hansen, Lars Hestbjerg, 2015, In: Frontiers in Microbiology. 5, 6 p., 750.

    Research output: Contribution to journal › Journal article › Research › peer-review

  84. Published

    Hundreds of circular novel plasmids and DNA elements identified in a rat cecum metamobilome

    Jørgensen, T. S., Xu, Z., Hansen, M. A., Sørensen, Søren Johannes & Hansen, L. H., 2014, In: P L o S One. 9, 2, 9 p., e87924.

    Research output: Contribution to journal › Journal article › Research › peer-review

  85. Published

    Characterization of the Mobilome and Microbiome of Rat Cecum

    Jørgensen, T. S., 2015, Department of Biology, Faculty of Science, University of Copenhagen. 174 p.

    Research output: Book/Report › Ph.D. thesis › Research

  86. Published

    Free-Living Nematodes Together With Associated Microbes Play an Essential Role in Apple Replant Disease

    Kanfra, X., Liu, B., Beerhues, L., Sørensen, Søren Johannes & Heuer, H., 2018, In: Frontiers in Plant Science. 9, p. 1-13 1666.

    Research output: Contribution to journal › Journal article › Research › peer-review

  87. Published

    Comparative Genomics Analysis of Keratin-Degrading Chryseobacterium Species Reveals Their Keratinolytic Potential for Secondary Metabolite Production

    Kang, D., Shoaie, S., Jacquiod, S., Sørensen, Søren Johannes & Ledesma-Amaro, R., 2021, In: Microorganisms. 9, 5, 15 p., 1042.

    Research output: Contribution to journal › Journal article › Research › peer-review

  88. Published

    Construction of Simplified Microbial Consortia to Degrade Recalcitrant Materials Based on Enrichment and Dilution-to-Extinction Cultures

    Kang, D., Jacquiod, S., Herschend, J., Wei, S., Nesme, Joseph & Sørensen, Søren Johannes, 2020, In: Frontiers in Microbiology. 10, 10 p., 3010.

    Research output: Contribution to journal › Journal article › Research › peer-review

  89. Published

    Metagenomic analysis of a keratin-degrading bacterial consortium provides insight into the keratinolytic mechanisms

    Kang, D., Huang, Y., Nesme, Joseph, Herschend, J., Jacquiod, S., Kot, Witold, Hansen, Lars Hestbjerg, Lange, L. & Sørensen, Søren Johannes, 2021, In: Science of the Total Environment. 761, 9 p., 143281.

    Research output: Contribution to journal › Journal article › Research › peer-review

  90. Published

    Enrichment and characterization of an environmental microbial consortium displaying efficient keratinolytic activity

    Kang, D., Herschend, J., Abu Al-Soud, W., Mortensen, M. S., Gonzalo, M., Jacquiod, S. J. A. & Sørensen, Søren Johannes, 2018, In: Bioresource Technology. 270, p. 303-310

    Research output: Contribution to journal › Journal article › Research › peer-review

  91. Published

    Novel Perspective on Valorization of Keratinous Materials using Microbial Consortia

    Kang, D., 2019, Department of Biology, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  92. Published

    Unravelling plasmidome distribution and interaction with its hosting microbiome

    Kav, A. B., Rozov, R., Bogumil, D., Sørensen, Søren Johannes, Hansen, Lars Hestbjerg, Benhar, I., Halperin, E., Shamir, R. & Mizrahi, I., 2020, In: Environmental Microbiology. 22, 1, p. 32-44

    Research output: Contribution to journal › Journal article › Research › peer-review

  93. Published

    Optimizing cleaning strategies for biofouling in reverse osmosis membrane systems: A comparative study using a self-formed instrument

    Khani, M., Hansen, Mads Frederik, Rasekh, B., Nosrati, M., Burmølle, Mette, Ghasemipanah, K. & Zamir, S. M., 2024, In: Journal of Industrial and Engineering Chemistry. 132, p. 448-460 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  94. Published

    Antifouling potential of enzymes applied to reverse osmosis membranes

    Khani, M., Hansen, Mads Frederik, Knoechel, Susanne, Rasekh, B., Ghasemipanah, K., Zamir, S. M., Nosrati, M. & Burmølle, Mette, 2023, In: Biofilm. 5, 9 p., 100119.

    Research output: Contribution to journal › Journal article › Research › peer-review

  95. Published

    Bacterial chitinolytic communities respond to chitin and pH alteration in soil

    Kielak, A., Cretoiu, M., Semenov, A., Sørensen, Søren Johannes & van Elsas, J., 2013, In: Applied and Environmental Microbiology. 79, 1, p. 263-272 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  96. Published

    Rifaximin has minor effects on bacterial composition, inflammation and bacterial translocation in cirrhosis: a randomized trial

    Kimer, N., Pedersen, J. S., Tavenier, J., Christensen, J. E., Busk, T. M., Hobolth, L., Krag, A., Abu Al-Soud, W., Mortensen, M. S., Sørensen, Søren Johannes, Møller, Søren & Bendtsen, Flemming, Jan 2018, In: Journal of Gastroenterology and Hepatology. 33, 1, p. 307-314 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  97. Published

    Fertilizer regime and cultivar affect barley growth and rhizobiome composition

    Kindtler, Nikolaj Lunding, Sheikh, Sanea, Richardy, J., Krogh, E., Maccario, Lorrie, Vestergård, M., Rodrigues da Fonseca, Rute Andreia, Ekelund, Flemming & Laursen, Kristian Holst, 2024, In: Applied Soil Ecology. 198, 13 p., 105384.

    Research output: Contribution to journal › Journal article › Research › peer-review

  98. Published

    Line probe assay for differentiation within Mycobacterium tuberculosis complex. Evaluation on clinical specimens and isolates including Mycobacterium pinnipedii

    Kjeldsen, M. K., Bek, D., Rasmussen, E. M., Priemé, Anders & Thomsen, V. Ø., 2009, In: Scandinavian Journal of Infectious Diseases. 41, 9, p. 635-41 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  99. Published

    Does the pollination of Dendrobium unicum Seidenf. involve "Pseudopollen"?

    Kjellsson, G. & Rasmussen, Finn N., 1987, In: Orchidee. 34, 4, p. 183-187 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  100. Published

    Microfungi in ecosystems: fungal occurrence and activity in litter and soil.

    Kjøller, Annelise Helene & Struwe, Sten, 1982, In: Oikos. 39, 3, p. 389-422 34 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

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