Microbiology

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  1. Published

    The role of Botanic Gardens in Orchid Research

    Rasmussen, Hanne Nina & Rasmussen, Finn N., 1989. 1 p.

    Research output: Contribution to conference › Conference abstract for conference › Research

  2. Published

    Svampe og orkideer i reagensglas

    Rasmussen, Hanne Nina, Andersen, T. F. & Johansen, B. B., 1987, In: Naturens Verden. 4, p. 127-136

    Research output: Contribution to journal › Journal article › Communication

  3. Published

    Orchid mycorrhiza: implications of a mycophagous life style

    Rasmussen, Hanne Nina & Rasmussen, Finn N., 2009, In: Oikos. 118, 3, p. 334-345 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Age- and tactic-related paternity success in male African elephants

    Rasmussen, H. B., Okello, J. B. A., Wittemyer, G., Siegismund, Hans Redlef, Arctander, P., Vollrath, F. & Douglas-Hamilton, I., 2008, In: Behavioral Ecology. 19, 1, p. 9-15

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Endocrine and behavioral changes in male african elephants: Linking hormone changes to sexual state and reproductive tactics

    Rasmussen, H. B., Ganswindt, A., Douglas-Hamilton, I. & Vollrath, F., 2008, In: Hormones and Behavior. 54, p. 539-548

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Cultivation of hard-to-culture subsurface mercury-resistant bacteria and discovery of new merA gene sequences

    Rasmussen, L. D., Zawadsky, C., Binnerup, S. J., Øregaard, G., Sørensen, Søren Johannes & Kroer, Niels, 2008, In: Applied and Environmental Microbiology. 74, 12, p. 3795-803 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Group-specific PCR primers to amplify 24S α-subunit rRNA genes from Kinetoplastida (Protozoa) used in denaturing gradient gel electrophoresis

    Rasmussen, L. D., Ekelund, Flemming, Hansen, Lars Hestbjerg, Sørensen, Søren Johannes & Johnsen, K., 2001, In: Microbial Ecology. 42, 2, p. 109-115

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Ecological succession in the vaginal microbiota during pregnancy and birth

    Rasmussen, Morten Arendt, Thorsen, Jonathan Jan Ilve, Dominguez-Bello, M. G., Blaser, M. J., Mortensen, M. S., Brejnrod, A. D., Shah, S. A., Hjelmsø, M. H., Lehtimäki, J., Trivedi, Urvish, Bisgaard, H., Sørensen, Søren Johannes & Stokholm, Jakob, 2020, In: The ISME Journal. 14, 9, p. 2325-2335 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Ancient human genome sequence of an extinct Palaeo-Eskimo

    Rasmussen, M., Li, Y., Lindgreen, S., Pedersen, J. S., Albrechtsen, A., Moltke, I., Metspalu, M., Metspalu, E., Kivisild, T., Gupta, R., Bertalan, M., Nielsen, K., Gilbert, T., Wang, Y., Raghavan, M., Campos, P., Kamp, H. L. M., Wilson, A. S., Gledhill, A., Tridico, S. & 32 others, Bunce, M., Lorenzen, Eline, Binladen, J. K. M. A., Guo, X., Zhao, J., Zhang, X., Zhang, H., Li, Z., Chen, M., Orlando, L. A. A., Kristiansen, Karsten, Bak, M., Tommerup, Niels, Bendixen, C., Pierre, T. L., Grønnow, B., Meldgaard, Morten, Andreasen, C., Fedorova, S. A., Osipova, L. P., Higham, T. F. G., Ramsey, C. B., Hansen, Thomas van Overeem, Nielsen, Finn Cilius, Crawford, M. H., Brunak, Søren, Sicheritz-Pontén, T., Villems, R., Nielsen, Rasmus, Krogh, Anders, Wang, J. & Willerslev, Eske, 11 Feb 2010, In: Nature. 463, 7282, p. 757-762 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Human milk oligosaccharide effects on intestinal function and inflammation after preterm birth in pigs

    Rasmussen, S. O., Martin, L., Østergaard, M. V., Rudloff, S., Roggenbuck, M., Nguyen, Duc Ninh, Sangild, Per Torp & Bering, S. B., 2017, In: The Journal of Nutritional Biochemistry. 40, p. 141-154 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Bovine colostrum improves neonatal growth, digestive function, and gut immunity relative to donor human milk and infant formula in preterm pigs

    Rasmussen, S. O., Martin, L., Østergaard, M. V., Rudloff, S., Li, Yanqi, Roggenbuck, M., Bering, S. B. & Sangild, Per Torp, 1 Sep 2016, In: American Journal of Physiology: Gastrointestinal and Liver Physiology. 311, 3, p. G480-G491 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Control region sequences indicate that multiple externae represent multiple infections by Sacculina carcini (Cirripedia: Rhizocephala)

    Rees, D. & Glenner, Henrik, 2014, In: Ecology and Evolution. 4, 16, p. 3290-3297 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Synergistic Interactions in Multispecies Biofilms

    Ren, D., 2014, Department of Biology, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  14. Published

    High-throughput screening of multispecies biofilm formation and quantitative PCR-based assessment of individual species proportions, useful for exploring interspecific bacterial interactions

    Ren, D., Madsen, Jonas Stenløkke, de la Cruz Perera, C. I., Bergmark, L., Sørensen, Søren Johannes & Burmølle, Mette, 2014, In: Microbial Ecology. 68, 1, p. 146-154 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    High prevalence of biofilm synergy among bacterial soil isolates in cocultures indicates bacterial interspecific cooperation

    Ren, D., Madsen, Jonas Stenløkke, Sørensen, Søren Johannes & Burmølle, Mette, 11 Jan 2015, In: ISME Journal. 9, p. 81-89 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Limiting the occurrence of antimicrobial resistance through targeted interventions directed at plasmid stability

    Riber, Leise, Burmølle, Mette, Milani, S. M., Alm, M., Thomsen, P., Hansen, Lars Hestbjerg & Sørensen, Søren Johannes, 2012.

    Research output: Contribution to conference › Poster › Research

  17. Published

    Design and synthesis of a functional self-replicating, broad host range cloning vector from bits and bytes

    Riber, Leise, Norman, A., Sørensen, Søren Johannes & Hansen, Lars Hestbjerg, 2012.

    Research output: Contribution to conference › Poster › Research

  18. Published

    Centre for Anti-resistance; Limiting the occurrence of antimicrobial resistance through targeted interventions directed at plasmid transfer and stability

    Riber, Leise, Burmølle, Mette, Hansen, Lars Hestbjerg & Sørensen, Søren Johannes, 2010.

    Research output: Contribution to conference › Poster › Research

  19. Published

    Limiting the occurrence of antimicrobial resistance through targeted interventions directed at plasmid transfer and stability

    Riber, Leise, Charbon, G., Burmølle, Mette, Hansen, Lars Hestbjerg & Sørensen, Søren Johannes, 2011.

    Research output: Contribution to conference › Poster › Research › peer-review

  20. Published

    Enhanced plasmid loss in bacterial populations exposed to the antimicrobial compound irgasan delivered from interpenetrating polymer network silicone hydrogels

    Riber, Leise, Burmølle, Mette, Alm, M., Milani, S. M., Thomsen, P., Hansen, Lars Hestbjerg & Sørensen, Søren Johannes, 2016, In: Plasmid. 87-88, p. 72-78 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Exploring the immediate and long-term impact on bacterial communities in soil amended with animal and urban organic waste fertilizers using pyrosequencing and screening for horizontal transfer of antibiotic resistance

    Riber, Leise, Poulsen, P. H. B., Abu Al-Soud, W., Hansen, L. B. S., Bergmark, L., Brejnrod, A. D., Norman, A., Hansen, Lars Hestbjerg, Magid, Jakob & Sørensen, Søren Johannes, 2014, In: F E M S Microbiology Ecology. 90, 1, p. 206-224 19 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Natural decay process affects the abundance and community structure of Bacteria and Archaea in Picea abies logs

    Rinta-Kanto, J. M., Sinkko, H., Rajala, T., Abu Al-Soud, W., Sørensen, Søren Johannes, Tamminen, M. V. & Timonen, S., 2016, In: F E M S Microbiology Ecology. 92, 7, 10 p., fiw087.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Temporal oral microbiome changes with brushing in children with cleft lip and palate

    Rodrigues, R., Chung, A. P., Mortensen, M. S., Fernandes, M. H., Monteiro, A. B., Furfuro, R., Silva, C. C., Manso, M. C., Sørensen, Søren Johannes & Morais, P. V., 2021, In: Heliyon. 7, 9 p., e06513.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    The infant gut virome is associated with preschool asthma risk independently of bacteria

    Rodríguez, C. L., Shah, S. A., Rasmussen, Morten Arendt, Thorsen, J., Boulund, U., Pedersen, C. T., Castro-Mejía, J. L., Poulsen, Christina Egeø, Poulsen, C. S., Deng, Ling, Larsen, Frej Andreas Nøhr, Widdowson, Michael Lawrence, Zhang, Yichang, Sørensen, Søren Johannes, Moineau, S., Petit, M. A., Chawes, Bo Lund Krogsgaard, Bønnelykke, Klaus, Nielsen, Dennis Sandris & Stokholm, Jakob, 2023, In: Nature Medicine. 30, p. 138-148 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    The giraffe (Giraffa camelopardalis) rumen microbiome

    Roggenbuck, M., Sauer, C., Poulsen, M., Bertelsen, M. F. & Sørensen, Søren Johannes, 2014, In: F E M S Microbiology Ecology. 90, 1, p. 237-246 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    The Characterization and Manipulation of the Reticulated Microbiome in Vertebrates

    Roggenbuck, M., 2014, Department of Biology, Faculty of Science, University of Copenhagen. 192 p.

    Research output: Book/Report › Ph.D. thesis › Research

  27. Published

    The microbiome of New World vultures

    Roggenbuck, M., Schnell, I. B., Blom, N., Bælum, J., Bertelsen, M. F., Sicheritz-Pontén, T., Sørensen, Søren Johannes, Gilbert, M Thomas P, Graves, G. R. & Hansen, L. H., 2014, In: Nature Communications. 5, 7 p., 5498.

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    Vitamin D and allergic airway disease shape the murine lung microbiome in a sex-specific manner

    Roggenbuck, M., Anderson, D., Barfod, K. K., Feelisch, M., Geldenhuys, S., Sørensen, Søren Johannes, Weeden, C. E., Hart, P. H. & Gorman, S., 2016, In: Respiratory Research. 17, 18 p., 116.

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    Improvement of pesticide removal in contaminated media using aqueous extracts from contaminated biopurification systems

    Romero, I. A., van Dillewijn, P., Nesme, Joseph, Sørensen, Søren Johannes & Romero, E., 2019, In: Science of the Total Environment. 691, p. 749-759 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    Extreme freeze-thaw cycles do not affect moss-associated nitrogen fixation across a temperature gradient, but affect nutrient loss from mosses

    Rousk, Kathrin, Pedersen, P., Priemé, Anders & Michelsen, Anders, Nov 2021, In: Acta Oecologica. 113, 10 p., 103796.

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    Metabolism of Milk Oligosaccharides in Preterm Pigs Sensitive to Necrotizing Enterocolitis

    Rudloff, S., Kuntz, S., Rasmussen, S. O., Roggenbuck, M., Sprenger, N., Kunz, C., Sangild, Per Torp & Bering, S. B., 2019, In: Frontiers in Nutrition. 6, 11 p., 23.

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    CRISPRCasTyper: Automated Identification, Annotation, and Classification of CRISPR-Cas Loci

    Russel, J., Pinilla Redondo, Rafael, Mayo-Muñoz, D., Shah, S. A. & Sørensen, Søren Johannes, 2020, In: CRISPR Journal. 3, 6, p. 462-469 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    Interactions in Microbial Community Assembly - from Patterns to Processes and Back

    Russel, J., 2018, Department of Biology, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  34. Published

    Antagonism correlates with metabolic similarity in diverse bacteria

    Russel, J., Røder, Henriette Lyng, Madsen, Jonas Stenløkke, Burmølle, Mette & Sørensen, Søren Johannes, 3 Oct 2017, In: Proceedings of the National Academy of Science of the United States of America. 114, 40, p. 10684-10688 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    Microbial diversity and dynamics throughout manufacturing and ripening of surface ripened semi-hard Danish Danbo cheeses investigated by culture-independent techniques

    Ryssel, M., Johansen, P., Abu Al-Soud, W., Sørensen, Søren Johannes, Arneborg, Nils & Jespersen, Lene, 2015, In: International Journal of Food Microbiology. 215, p. 124-30 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    Unravelling interspecies interactions across heterogeneities in complex biofilm communities

    Røder, Henriette Lyng, Olsen, N. M. C., Whiteley, M. & Burmølle, Mette, 2020, In: Environmental Microbiology. 22, 1, p. 5-16 12 p.

    Research output: Contribution to journal › Review › Research › peer-review

  37. Published

    Co-existence in multispecies biofilm communities

    Røder, Henriette Lyng, 2017, Department of Biology, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  38. Published

    Studying bacterial multispecies biofilms: where to start?

    Røder, Henriette Lyng, Sørensen, Søren Johannes & Burmølle, Mette, 2016, In: Trends in Microbiology. 24, 6, p. 503-513 11 p.

    Research output: Contribution to journal › Review › Research › peer-review

  39. Published

    Interspecies interactions reduce selection for a biofilm-optimized variant in a four-species biofilm model

    Røder, Henriette Lyng, Liu, W., Sørensen, Søren Johannes, Madsen, Jonas Stenløkke & Burmølle, Mette, 2019, In: Environmental Microbiology Reports. 11, 6, p. 835-839 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    The impact of the conjugative IncP-1 plasmid pKJK5 on multispecies biofilm formation is dependent on the plasmid host

    Røder, Henriette Lyng, Hansen, Lars Hestbjerg, Sørensen, Søren Johannes & Burmølle, Mette, 2013, In: F E M S Microbiology Letters. 344, 2, p. 186-192 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    Flagellar interference with plasmid uptake in biofilms: a joint experimental and modeling study

    Røder, Henriette Lyng, Christidi, E., Amador Hierro, Cristina Isabel, Music, S., Olesen, Asmus Kalckar, Svensson, B., Madsen, Jonas Stenløkke, Herschend, J., Kreft, J. & Burmølle, Mette, 2024, In: Applied and Environmental Microbiology. 90, 1, 15 p., e01510-23.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    Enhanced bacterial mutualism through an evolved biofilm phenotype

    Røder, Henriette Lyng, Herschend, J., Russel, J., Andersen, M. F., Madsen, Jonas Stenløkke, Sørensen, Søren Johannes & Burmølle, Mette, 1 Nov 2018, In: I S M E Journal. 12, p. 2608-2618 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    Interspecies interactions result in enhanced biofilm formation by co-cultures of bacteria isolated from a food processing environment

    Røder, Henriette Lyng, Raghupathi, P. K., Herschend, J., Brejnrod, A. D., Knoechel, Susanne, Sørensen, Søren Johannes & Burmølle, Mette, 2015, In: Food Microbiology. 51, p. 18-24 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    Biofilms can act as plasmid reserves in the absence of plasmid specific selection

    Røder, Henriette Lyng, Trivedi, Urvish, Russel, J., Kragh, K. N., Herschend, J., Thalsø-Madsen, I., Tolker-Nielsen, Tim, Bjarnsholt, Thomas, Burmølle, Mette & Madsen, Jonas Stenløkke, 2021, In: npj Biofilms and Microbiomes. 7, 6 p., 78.

    Research output: Contribution to journal › Letter › Research › peer-review

  45. Published

    Synergistic interactions in multispecies biofilm combinations of bacterial isolates recovered from diverse food processing industries

    Sadiq, F. A., De Reu, K., Burmølle, Mette, Maes, S. & Heyndrickx, M., 2023, In: Frontiers in Microbiology. 14, 13 p., 1159434.

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    Trans-kingdom interactions in mixed biofilm communities

    Sadiq, F. A., Hansen, Mads Frederik, Burmølle, Mette, Heyndrickx, M., Flint, S., Lu, W., Chen, W. & Zhang, H., 2022, In: F E M S Microbiology Reviews. 46, 5, 20 p., fuac024.

    Research output: Contribution to journal › Review › Research › peer-review

  47. Published

    Community-wide changes reflecting bacterial interspecific interactions in multispecies biofilms

    Sadiq, F. A., Burmølle, Mette, Heyndrickx, M., Flint, S., Lu, W., Chen, W., Zhao, J. & Zhang, H., 2021, In: Critical Reviews in Microbiology. 47, 3, p. 338-358 21 p.

    Research output: Contribution to journal › Review › Research › peer-review

  48. Published

    Interspecies interactions in dairy biofilms drive community structure and response against cleaning and disinfection

    Sadiq, F. A., De Reu, K., Yang, Nan, Burmølle, Mette & Heyndrickx, M., 2024, In: Biofilm. 7, 13 p., 100195.

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    Dynamic social interactions and keystone species shape the diversity and stability of mixed-species biofilms – an example from dairy isolates

    Sadiq, F. A., De Reu, K., Steenackers, H., Van De Walle, A., Burmølle, Mette & Heyndrickx, M., 2023, In: ISME communications. 3, 1, 12 p., 118.

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    Tracking down human contamination in ancient human teeth.

    Sampietro, M. L., Gilbert, M Thomas P, Lao, O., Caramelli, D., Lari, M., Bertranpetit, J. & Lalueza-Fox, C., 2006, In: Molecular Biology and Evolution. 23, 9, p. 1801-7 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  51. Published

    Soil DNA extraction procedure influences protist 18S rRNA gene community profiling outcome

    Santos, S. S., Nunes, I. M., Nielsen, Tue Kjærgaard, Jacquiod, S. J. A., Hansen, L. H. & Winding, A., Jul 2017, In: Protist. 168, 3, p. 283-293 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  52. Published

    Specialized microbiomes facilitate natural rhizosphere microbiome interactions counteracting high salinity stress in plants

    Santos, S. S., Rask, K. A., Vestergård, M., Johansen, Jesper Liengaard, Priemé, Anders, Frøslev, Tobias Guldberg, González, A. M. M., He, H. & Ekelund, Flemming, 2021, In: Environmental and Experimental Botany. 186, 12 p., 104430.

    Research output: Contribution to journal › Journal article › Research › peer-review

  53. Published

    Acromyrmex leaf-cutting ants have simple gut microbiota with nitrogen-fixing potential

    Sapountzis, P., Zhukova, M., Hansen, Lars Hestbjerg, Sørensen, Søren Johannes, Schiøtt, M. & Boomsma, Jacobus J., 2015, In: Applied and Environmental Microbiology. 81, 16, p. 5527-5537 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  54. Published

    The biofilm life cycle: expanding the conceptual model of biofilm formation

    Sauer, K., Stoodley, P., Goeres, D. M., Hall-Stoodley, L., Burmølle, Mette, Stewart, P. S. & Bjarnsholt, Thomas, 2022, In: Nature Reviews Microbiology. 20, 10, p. 608-620 13 p.

    Research output: Contribution to journal › Review › Research › peer-review

  55. Published

    Enrichment of endophytic Actinobacteria in roots and rhizomes of Miscanthus × giganteus plants exposed to diclofenac and sulfamethoxazole

    Sauvêtre, A., Węgrzyn, A., Yang, L., Vestergaard, G., Miksch, K., Schröder, P. & Radl, V., 2020, In: Environmental Science and Pollution Research. 27, 11, p. 11892-11904 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  56. Published

    Heterogeneity in recombinant protein production

    Schalén, M., Johanson, T., Neves Lundin, A. L., Sørensen, Søren Johannes & Lantz, A. E., 2012, In: New Biotechnology. 29, Supplement, 0, p. S78 1 p.

    Research output: Contribution to journal › Conference abstract in journal › Research › peer-review

  57. Published

    Salmonella persistence in soil depends on reciprocal interactions with indigenous microorganisms

    Schierstaedt, J., Jechalke, S., Nesme, Joseph, Neuhaus, K., Sørensen, Søren Johannes, Grosch, R., Smalla, K. & Schikora, A., 2020, In: Environmental Microbiology. 22, 7, p. 2639-2652 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  58. Published

    Microbial indicators for soil quality

    Schloter, M., Nannipieri, P., Sørensen, Søren Johannes & van Elsas, J. D., Jan 2018, In: Biology and Fertility of Soils. 54, 1, p. 1-10 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  59. Published

    The Effect of Lean-Seafood and Non-Seafood Diets on Fecal Metabolites and Gut Microbiome: Results from a Randomized Crossover Intervention Study

    Schmedes, M., Brejnrod, A. D., Aadland, E. K., Kiilerich, P., Kristiansen, Karsten, Jacques, H., Lavigne, C., Graff, I. E., Eng, Ø., Holthe, A., Mellgren, G., Young, J. F., Sundekilde, U. K., Liaset, B. & Bertram, H. C., 2019, In: Molecular Nutrition and Food Research. 63, 1, p. 1-8 1700976.

    Research output: Contribution to journal › Journal article › Research › peer-review

  60. Published

    Alkalilactibacillus ikkensis, gen. nov., sp. nov., a novel enzyme-producing bacterium from a cold and alkaline environment in Greenland

    Schmidt, M., Priemé, Anders, Johansen, A. & Stougaard, P., 2012, In: Extremophiles. 16, 2, p. 297-305 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  61. Published

    Arsukibacterium ikkense gen. nov., sp. nov, a novel alkaliphilic, enzyme-producing ¿-proteobacterium isolated from a cold and alkaline environment in Greenland

    Schmidt, M., Priemé, Anders & Stougaard, P., 2007, In: Systematic and Applied Microbiology. 30, 3, p. 197-201 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  62. Published

    Rhodonellum psychrophilum gen. nov., sp. nov., a novel psychrophilic and alkaliphilic bacterium of the phylum Bacteroidetes isolated from Greenland

    Schmidt, M., Priemé, Anders & Stougaard, P., 2006, In: International Journal of Systematic and Evolutionary Microbiology. 56, p. 2887-2892 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  63. Published

    Bacterial diversity in permanently cold and alkaline ikaite columns from Greenland

    Schmidt, M., Priemé, Anders & Stougaard, P., 2006, In: Extremophiles. 10, 6, p. 551-562 12 p.

    Research output: Contribution to journal › Journal article › Research

  64. Published

    A community resource for paired genomic and metabolomic data mining

    Schorn, M. A., Verhoeven, S., Ridder, L., Huber, F., Acharya, D. D., Aksenov, A. A., Aleti, G., Moghaddam, J. A., Aron, A. T., Aziz, S., Bauermeister, A., Bauman, K. D., Baunach, M., Beemelmanns, C., Beman, J. M., Berlanga-Clavero, M. V., Blacutt, A. A., Bode, H. B., Boullie, A., Brejnrod, A. & 90 others, Bugni, T. S., Calteau, A., Cao, L., Carrión, V. J., Castelo-Branco, R., Chanana, S., Chase, A. B., Chevrette, M. G., Costa-Lotufo, L. V., Crawford, J. M., Currie, C. R., Cuypers, B., Dang, T., de Rond, T., Demko, A. M., Dittmann, E., Du, C., Drozd, C., Dujardin, J., Dutton, R. J., Edlund, A., Fewer, D. P., Garg, N., Gauglitz, J. M., Gentry, E. C., Gerwick, L., Glukhov, E., Gross, H., Gugger, M., Matus, D. G. G., Helfrich, E. J. N., Hempel, B., Hur, J., Iorio, M., Jensen, P. R., Kang, K. B., Kaysser, L., Kelleher, N. L., Kim, C. S., Kim, K. H., Koester, I., König, G. M., Leao, T., Lee, S. R., Lee, Y., Li, Xuan Ji, Little, J. C., Maloney, K. N., Männle, D., Martin H., C., McAvoy, A. C., Metcalf, W. W., Mohimani, H., Molina-Santiago, C., Moore, B. S., Mullowney, M. W., Muskat, M., Nothias, L., O'Neill, E. C., Parkinson, E. I., Petras, D., Piel, J., Pierce, E. C., Pires, K., Reher, R., Romero, D., Roper, M. C., Rust, M., Saad, H., Saenz, C., Sanchez, L. M., Sørensen, Søren Johannes, Sosio, M., Süssmuth, R. D., Sweeney, D., Tahlan, K., Thomson, R. J., Tobias, N. J., Trindade-Silva, A. E., van Wezel, G. P., Wang, M., Weldon, K. C., Zhang, F., Ziemert, N., Duncan, K. R., Crüsemann, M., Rogers, S., Dorrestein, P. C., Medema, M. H. & van der Hooft, J. J. J., 2021, In: Nature Chemical Biology. 17, 4, p. 363-368

    Research output: Contribution to journal › Journal article › Research › peer-review

  65. Published

    Bacterial and protozoan dynamics upon thawing and freezing of an active layer permafrost soil

    Schostag, M., Priemé, Anders, Jacquiod, S., Russel, J., Ekelund, Flemming & Jacobsen, C. S., 2019, In: ISME Journal. 13, p. 1345-1359

    Research output: Contribution to journal › Journal article › Research › peer-review

  66. Published

    Combining reverse osmosis and microbial degradation for remediation of drinking water contaminated with recalcitrant pesticide residue

    Schostag, M. D., Gobbi, Alex, Fini, M. N., Ellegaard-Jensen, L., Aamand, J., Hansen, Lars Hestbjerg, Muff, J. & Albers, C. N., 2022, In: Water Research. 216, 12 p., 118352.

    Research output: Contribution to journal › Journal article › Research › peer-review

  67. Published

    Distinct summer and winter bacterial communities in the active layer of Svalbard permafrost revealed by DNA- and RNA-based analyses

    Schostag, M. D., Stibal, M., Jacobsen, C. S., Bælum, J., Tas, N., Elberling, Bo, Jansson, J., Semenchuk, P. & Priemé, Anders, 2015, In: Frontiers in Microbiology. 6, 13 p., 399.

    Research output: Contribution to journal › Journal article › Research › peer-review

  68. Published

    Living in the cold: Microbial community and function dynamics in Arctic soils at changing temperature

    Schostag, M. D., 2017, Department of Biology, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  69. Published

    Low Turnover of Soil Bacterial rRNA at Low Temperatures

    Schostag, M. D., Albers, C. N., Jacobsen, C. S. & Priemé, Anders, 2020, In: Frontiers in Microbiology. 11, 5 p., 962.

    Research output: Contribution to journal › Journal article › Research › peer-review

  70. Published

    Critical Assessment of Metagenome Interpretation: a benchmark of metagenomics software

    Sczyrba, A., Hofmann, P., Belmann, P., Koslicki, D., Janssen, S., Dröge, J., Gregor, I., Majda, S., Fiedler, J., Dahms, E., Bremges, A., Fritz, A., Garrido-Oter, R., Jørgensen, T. S., Shapiro, N., Blood, P. D., Gurevich, A., Bai, Y., Turaev, D., DeMaere, M. Z. & 47 others, Chikhi, R., Nagarajan, N., Quince, C., Meyer, F., Balvociute, M., Hansen, L. H., Sørensen, Søren Johannes, Chia, B. K. H., Denis, B., Froula, J. L., Wang, Z., Egan, R., Kang, D. D., Cook, J. J., Deltel, C., Beckstette, M., Lemaitre, C., Peterlongo, P., Rizk, G., Lavenier, D., Wu, Y., Singer, S. W., Jain, C., Strous, M., Klingenberg, H., Meinicke, P., Barton, M. D., Lingner, T., Lin, H., Liao, Y., Silva, G. G. Z., Cuevas, D. A., Edwards, R. A., Saha, S., Piro, V. C., Renard, B. Y., Pop, M., Klenk, H., Göker, M., Kyrpides, N. C., Woyke, T., Vorholt, J. A., Schulze-Lefert, P., Rubin, E. M., Darling, A. E., Rattei, T. & McHardy, A. C., 2017, In: Nature Methods. 14, 11, p. 1063-1071 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  71. Published

    Botanisk Laboratorium - over 100 år i botanikkens tjeneste

    Seberg, Ole & Frederiksen, S. E., 2009, In: URT. 2009, 1, p. 23-33 11 p.

    Research output: Contribution to journal › Journal article › Research

  72. Published

    Frede Fup

    Seberg, Ole & Johansen, B. B., 1991, In: URT. 1991 (3), p. 92-99

    Research output: Contribution to journal › Journal article › Research

  73. Published

    Expanding known viral diversity in the healthy infant gut

    Shah, S. A., Deng, L., Thorsen, J., Pedersen, A. G., Dion, M. B., Castro-Mejía, J. L., Silins, R., Romme, F. O., Sausset, R., Jessen, L. E., Ndela, E. O., Hjelmsø, M., Rasmussen, M. A., Redgwell, T. A., Rodríguez, C. L., Vestergaard, G., Zhang, Y., Chawes, B., Bønnelykke, K., Sørensen, S. J. & 6 others, Bisgaard, H., Enault, F., Stokholm, Jakob, Moineau, S., Petit, M. A. & Nielsen, Dennis Sandris, 2023, In: Nature Microbiology. 8, p. 986–998

    Research output: Contribution to journal › Journal article › Research › peer-review

  74. Published

    Rise and fall of the Beringian steppe bison

    Shapiro, B., Drummond, A. J., Rambaut, A., Wilson, M. C., Matheus, P. E., Sher, A. V., Pybus, O. G., Gilbert, M. T. P., Barnes, I., Binladen, J., Willerslev, E., Hansen, A. J., Baryshnikov, G. F., Burns, J. A., Davydov, S., Driver, J. C., Froese, D. G., Harington, C. R., Keddie, G., Kosintsev, P. & 7 others, Kunz, M. L., Martin, L. D., Stephenson, R. O., Storer, J., Tedford, R., Zimov, S. & Cooper, A., 2004, In: Science. 306, 5701, p. 1561-5

    Research output: Contribution to journal › Journal article › Research › peer-review

  75. Published

    Adaptive genic evolution in the Drosophila genomes

    Shapiro, J. A., Huang, W., Zhang, C., Hubisz, M. J., Lu, J., Turissini, D. A., Fang, S., Wang, H., Hudson, R. R., Nielsen, Rasmus, Chen, Z. & Wu, C., 2007, In: Proceedings of the National Academy of Science of the United States of America. 104, 7, p. 2271-6 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  76. Published

    The first record of "spelaeoid" bears in Arctic Siberia

    Sher, A. V., Weinstock Arenovitz, J., Baryshnikov, G. F., Davydov, S. P., Boeskorov, G. G., Zazhigin, V. S. & Nikolskiy, P. A., 2011, In: Quaternary Science Reviews. 30, 17-18, p. 2238-2249 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  77. Published

    Disparity in population differentiation of sex-linked and autosomal variation in sibling species of the Jaera albifrons (Isopoda) complex

    Siegismund, Hans Redlef, 2003, In: Journal of Heredity. 93, 6, p. 432-9 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  78. Published

    Structure of African elephant populations

    Siegismund, Hans Redlef & Arctander, P., 1996, In: Journal of Heredity. 86, 6, p. 467-9 2 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  79. Published

    Intrapopulation and Interpopulation Genetic Variation ofQuercus in Denmark in Denmark

    Siegismund, Hans Redlef & Jensen, J. S., 2001, In: Scandinavian Journal of Forest Research. 16, 2, p. 103-116

    Research output: Contribution to journal › Journal article › Research › peer-review

  80. Published

    Mating system system estimates and effective population numbers for an isolated noble fir (Abies procera) clonal seed orchard in Denmark

    Siegismund, Hans Redlef, Kjær, Erik Dahl & Nielsen, Ulrik Braüner, 1996, In: Canadian Journal of Forest Research. 26, p. 1135-1141

    Research output: Contribution to journal › Journal article › Research › peer-review

  81. Published

    Population structure of African buffalo inferred from mtDNA sequences and microsatellite loci: high variation but low differentiation

    Simonsen, Bo Thisted, Siegismund, Hans Redlef & Arctander, P., 1998, In: Molecular Ecology. 7, 2, p. 225-37 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  82. Published

    Loss of microbial diversity in soils is coincident with reductions in some specialized functions

    Singh, B. K., Quince, C., Macdonald, C. A., Khachane, A., Thomas, N., Abu Al-Soud, W., Sørensen, Søren Johannes, He, Z., White, D., Sinclair, A., Crooks, B., Zhou, J. & Campbell, C. D., 2014, In: Environmental Microbiology. 16, 8, p. 2408-2420 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  83. Published

    Patterns of mutation and selection at synonymous sites in Drosophila

    Singh, N. D., Bauer DuMont, V. L., Hubisz, M. J., Nielsen, Rasmus & Aquadro, C. F., 2007, In: Molecular Biology and Evolution. 24, 12, p. 2687-97 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  84. Published

    Comparative Genomics of Novel Agrobacterium G3 Strains Isolated From the International Space Station and Description of Agrobacterium tomkonis sp. nov.

    Singh, N. K., Lavire, C., Nesme, Joseph, Vial, L., Nesme, X., Mason, C. E., Lassalle, F. & Venkateswaran, K., 2021, In: Frontiers in Microbiology. 12, 15 p., 765943.

    Research output: Contribution to journal › Journal article › Research › peer-review

  85. Published

    Similar sponge-associated bacteria can be acquired via both vertical and horizontal transmission

    Sipkema, D., de Caralt, S., Morillo, J. A., Abu Al-Soud, W., Sørensen, Søren Johannes, Smidt, H. & Uriz, M. J., 2015, In: Environmental Microbiology. 17, 10, p. 3807-3821 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  86. Published

     An interdisciplinary approach for studying greenhouse gases at the landscape scale

    Sitaula, B., Warner, W., Bakken, L., Hargreaves, K., Klemedtsson, L., Sitaula, J., Christensen, Søren & Priemé, Anders, 1995, In: Norwegian Journal of Agricultural Sciences. 9, 3-4, p. 189-209 21 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  87. Published

    In Situ PCR - a tool for studyin plant molecular development

    Skipper, M., Frederiksen, S. E. & Johansen, B. B., 2000.

    Research output: Contribution to conference › Poster › Research

  88. Published

    Isolation of genes involved in ovule development in the orchid Dendrobium thyrsiflorum (Reichb. f.) using expressed sequence tag (EST) analysis

    Skipper, M., Pedersen, K. B., Frederiksen, S. E. & Johansen, B. B., 2003.

    Research output: Contribution to conference › Poster › Research

  89. Published

    Oxidation of atmospheric methane in Northern European soils, comparison with other ecosystems, and uncertainties in the global terrestrial sink

    Smith, K. A., Dobbie, K. E., Ball, B. C., Bakken, L. R., Sitaula, B. K., Hansen, S., Brumme, R., Borken, W., Christensen, Søren, Priemé, Anders, Fowler, D., MacDonald, J. A., Skiba, U., Klemedtsson, L., Kasimir-Klemedtsson, A., Degorska, A. & Orlanski, P., 2000, In: Global Change Biology. 6, 7, p. 791-803

    Research output: Contribution to journal › Journal article › Research › peer-review

  90. Published

    Hyperforin accumulates in the translucent glands of Hypericum perforatum.

    Soelberg, Jens, Jørgensen, L. B. & Jäger, A. K., 2007, In: Annals of Botany. 99, 6, p. 1097-1100 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  91. Published

    ERRATUM: Hyperforin accumulates in the translucent glands of Hypericum perforatum

    Soelberg, J., Jørgensen, L. B. & Jäger, A. K., 2007, In: Annals of Botany. 100, 3, p. 679 1 p.

    Research output: Contribution to journal › Letter › Research

  92. Published

    Long-Term Fertilization Strategy Impacts Rhizoctonia solani–Microbe Interactions in Soil and Rhizosphere and Defense Responses in Lettuce

    Sommermann, L., Babin, D., Behr, J. H., Chowdhury, S. P., Sandmann, M., Windisch, S., Neumann, G., Nesme, Joseph, Sørensen, Søren Johannes, Schellenberg, I., Rothballer, M., Geistlinger, J., Smalla, K. & Grosch, R., 2022, In: Microorganisms. 10, 9, 27 p., 1717.

    Research output: Contribution to journal › Journal article › Research › peer-review

  93. Published

    A converging subset of soil bacterial taxa is permissive to the IncP-1 plasmid pKJK5 across a range of soil copper contamination

    Song, J., Klümper, U., Riber, Leise, Dechesne, A., Smets, B. F., Sørensen, Søren Johannes & Brandt, Kristian Koefoed, 2020, In: FEMS Microbiology Ecology. 96, 11, 10 p., fiaa200.

    Research output: Contribution to journal › Journal article › Research › peer-review

  94. Published

    On the phylogeny of the metazoa in the light of Cycliophora and Micrognathozoa

    Sorensen, M. V., Funch, P., Willerslev, Eske, Hansen, Anders Johannes & Olesen, Jørgen, 2000, In: Zoologischer Anzeiger. 239, 3-4

    Research output: Contribution to journal › Journal article › Research › peer-review

  95. Published

    Hvalernes udviklingshistorie

    Steeman, M. E., 2008, In: Naturens Verden. 3, p. 2-11

    Research output: Contribution to journal › Journal article › Research

  96. Published

    A new baleen whale from the Late Miocene of Denmark and early mysticete hearing

    Steeman, M. E., 2009, In: Palaeontology. 52, 5, p. 1169-1190

    Research output: Contribution to journal › Journal article › Research › peer-review

  97. Published

    Konflikter mellem molekylære og morfologiske hvalfylogenier

    Steeman, M. E., 2008.

    Research output: Contribution to conference › Conference abstract for conference › Research

  98. Published

    Radiation of extant Cetaceans Driven by Restructuring of the Oceans

    Steeman, M. E., Hebsgaard, M. B., Fordyce, J., Syw, H., Rabovsky, D., Nielsen, Rasmus, Rahbek, Carsten, Glenner, Henrik, Sørensen, Martin Vinther & Willerslev, Eske, 2009, In: Systematic Biology. 58, p. 573-585 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  99. Published

    Molekyler og morfologi som redskaber til rekonstruktion af hvalernes evolution

    Steeman, M. E., 2008, In: Dansk Naturhistorisk Forenings Årsskrift. 18, p. 18-23 6 p.

    Research output: Contribution to journal › Journal article › Research

  100. Published

    Kin discrimination promotes horizontal gene transfer between unrelated strains in Bacillus subtilis

    Stefanic, P., Belcijan, K., Kraigher, B., Kostanjšek, R., Nesme, Joseph, Madsen, Jonas Stenløkke, Kovac, J., Sørensen, Søren Johannes, Vos, M. & Mandic-Mulec, I., 2021, In: Nature Communications. 12, 11 p., 3457.

    Research output: Contribution to journal › Journal article › Research › peer-review

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