- Published
Comparative analysis of the alveolar microbiome in COPD, ECOPD, Sarcoidosis, and ILD patients to identify respiratory illnesses specific microbial signatures
Gupta, S., Shariff, M., Chaturvedi, G., Sharma, A., Goel, N., Yadav, M., Mortensen, M. S., Sørensen, Søren Johannes, Mukerji, M. & Chauhan, N. S., 2021, In: Scientific Reports. 11, 11 p., 3963.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Comparative genomic analysis reveals ecological differentiation in the genus Carnobacterium
Iskandar, C. F., Borges, F., Taminiau, B., Daube, G., Zagorec, M., Remenant, B., Leisner, Jørgen, Hansen, M. A., Sørensen, Søren Johannes, Mangavel, C., Cailliez-Grimal, C. & Revol-Junelles, A., 2017, In: Frontiers in Microbiology. 8, 14 p., 357.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Comparison of aerobic and anaerobic [3H]leucine incorporation assays for determining pollution-induced bacterial community tolerance in copper-polluted, irrigated soils
Aaen, K. N., Holm, Peter Engelund, Priemé, Anders, Hung, N. N. & Brandt, Kristian Koefoed, 2011, In: Environmental Toxicology and Chemistry. 30, 3, p. 588-595 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Comparison of antibiotic-resistant bacteria and antibiotic resistance genes abundance in hospital and community wastewater: A systematic review
Hassoun-Kheir, N., Stabholz, Y., Kreft, J., de la Cruz, R., Romalde, J. L., Nesme, Joseph, Sørensen, Søren Johannes, Smets, B. F., Graham, D. & Paul, M., 2020, In: Science of the Total Environment. 743, 11 p., 140804.Research output: Contribution to journal › Review › Research › peer-review
- Published
Comparison of the occurrence of the saprophytic soil fungi in two differently cultivated field soils
Elmholt, S. & Kjøller, Annelise Helene, 1 Jan 1989, In: Biological Agriculture and Horticulture. 6, 3, p. 229-239 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Compatibility of X-ray computed tomography with plant gene expression, rhizosphere bacterial communities and enzyme activities
Ganther, M., Yim, B., Ibrahim, Z., Bienert, M. D., Lippold, E., Maccario, Lorrie, Sørensen, Søren Johannes, Bienert, G. P., Vetterlein, D., Heintz-Buschart, A., Blagodatskaya, E., Smalla, K. & Tarkka, M. T., 2020, In: Journal of Experimental Botany. 71, 18, p. 5603-5614 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Complete genome sequence of Staphylococcus aureus strain M1, a unique t024-ST8-IVa Danish methicillin-resistant S. aureus clone
Larner-Svensson, H., Worning, P., Bartels, Mette Damkjær, Hansen, Lars Hestbjerg, Boye, K. & Westh, H., 2013, In: Genome Announcements. 1, 3, 2 p., e00336-13.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Complete genome sequence of the cystic fibrosis pathogen Achromobacter xylosoxidans NH44784-1996 complies with important pathogenic phenotypes
Jakobsen, T. H., Hansen, M. A., Jensen, P. Ø., Hansen, L., Riber, L., Cockburn, A. P. I., Kolpen, M., Hansen, C. R., Ridderberg, W., Eickhardt-Sørensen, S. R., Hansen, M., Kerpedjiev, P., Alhede, M., Qvortrup, K., Burmølle, M., Moser, C. E., Kühl, M., Ciofu, O., Givskov, M., Sørensen, S. J. & 2 others, , 2013, In: P L o S One. 8, 7, 17 p., e68484.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Complete genome sequences of four novel Lactococcus lactis phages distantly related to the Rare 1706 Phage Species
Kot, Witold, Neve, H., Vogensen, Finn Kvist, Heller, K. J., Sørensen, Søren Johannes & Hansen, L. H., 2014, In: Genome Announcements. 2, 4, 2 p., e00265-14.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Complete nucleotide sequence of the self-transmissible TOL plasmid pD2RT provides new insight into arrangement of toluene catabolic plasmids
Jutkina, J., Hansen, Lars Hestbjerg, Li, L., Heinaru, E., Vedler, E., Joesaar, M. & Heinaru, A., Jan 2013, In: Plasmid. 70, 3, p. 393-405 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Composted sewage sludge influences the microbiome and persistence of human pathogens in soil
Major, N., Schierstaedt, J., Jechalke, S., Nesme, Joseph, Ban, S. G., Černe, M., Sørensen, Søren Johannes, Ban, D. & Schikora, A., 2020, In: Microorganisms. 8, 7, 14 p., 1020.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Conjugative Plasmid Conferring Resistance to Olaquindox
Sørensen, A. H., Hansen, Lars Hestbjerg, Johannesen, E. & Sørensen, Søren Johannes, 2003, In: Antimicrobial agents and Chemotheraphy. 47, 2, p. 798-799 2 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Conjugative plasmids inhibit extracellular electron transfer in Geobacter sulfurreducens
Fessler, M., Madsen, Jonas Stenløkke & Zhang, Y., 2023, In: Frontiers in Microbiology. 14, 12 p., 1150091.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Conjugative plasmids: Vessels of the communal gene pool
Norman, A., Hansen, Lars Hestbjerg & Sørensen, Søren Johannes, 2009, In: Philosophical Transactions of the Royal Society of London. Biological Sciences. 364, 1527, p. 2275-2289 15 p.Research output: Contribution to journal › Review › Research › peer-review
- Published
Construction and Use of Flow Cytometry Optimized Plasmid-Sensor Strains: Genomes in Flux
Bahl, M. I., Oregaard, G., Sørensen, Søren Johannes & Hansen, Lars Hestbjerg, 2009, Horizontal Gene Transfer. Gogarten, M. B., Gogarten, J. P. & Olendzenski, L. C. (eds.). Humana Press, Vol. 532. p. 257-268 (Methods in Molecular Biology).Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research
- Published
Construction of Simplified Microbial Consortia to Degrade Recalcitrant Materials Based on Enrichment and Dilution-to-Extinction Cultures
Kang, D., Jacquiod, S., Herschend, J., Wei, S., Nesme, Joseph & Sørensen, Søren Johannes, 2020, In: Frontiers in Microbiology. 10, 10 p., 3010.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Construction of a ColD cda Promoter-Based SOS-Green Fluorescent Protein Whole-Cell Biosensor with Higher Sensitivity toward Genotoxic Compounds than Constructs Based on recA, umuDC, or sulA Promoters
Norman, A., Hansen, Lars Hestbjerg & Sørensen, Søren Johannes, 2005, In: Applied and Environmental Microbiology. 71, 5, p. 2338-2346Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Construction of biosensors to investigate physiological diversity in fermentation processes
Han, S., Lundin, L. & Sørensen, Søren Johannes, 2011.Research output: Contribution to conference › Poster › Research
- Published
Contamination in the draft of the human genome masquerades as lateral gene transfer
Willerslev, Eske, Mourier, T., Hansen, Anders Johannes, Christensen, Professor Emeritus, B., Barnes, I. & Salzberg, S. L., 2002, In: DNA sequence: the journal of DNA sequencing and mapping. 13, 2, p. 75-6Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Context dependency and saturating effects of loss of rare soil microbes on plant productivity
Hol, W. H. G., de Boer, W., de Hollander, M., Kuramae, E. E., Meisner, A. & van der Putten, W. H., 2015, In: Frontiers in Plant Science. 6, 10 p., 485.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Continuous measurements of nitrous oxide isotopomers during incubation experiments
Winther, M. N., Balslev-Harder, D., Christensen, Søren, Priemé, Anders, Elberling, Bo, Crosson, E. & Blunier, Thomas, 2016, In: Biogeosciences. 15, p. 767-780 19 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Continuous measurements of nitrous oxide isotopomers during incubation experiments
Winther, M., Balslev-Harder, D., Christensen, S., Priemé, Anders, Elberling, Bo, Crosson, E. & Blunier, Thomas, 16 May 2017, 24 p. Copernicus/EGU.Research output: Other contribution › Research
- Published
Contribution to habitat types visited
Rasmussen, Finn N., 1973, The Danish-Ethiopian Botanical expedtion 1972-1973. Friis, I. (ed.). Copenhagen: Institut for Systematisk BotanikResearch output: Chapter in Book/Report/Conference proceeding › Report chapter › Research
- Published
Contributions of rpb2 and tef1 to the phylogeny of mushrooms and allies (Basidiomycota, Fungi)
Brandon Matheny, P., Wang, Z., Binder, M., Curtis, J. M., Lim, Y. W., Nilsson, R. H., Hughes, K. W., Hofstetter, V., Ammirati, J. F., Schoch, C. L., Langer, E., Langer, G., McLaughlin, D. J., Wilson, A. W., Frøslev, T., Ge, Z. W., Kerrigan, R. W., Slot, J. C., Yang, Z. L., Baroni, T. J. & 6 others, , 2007, In: Molecular Phylogenetics and Evolution. 43, 2, p. 430-451 22 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Control region sequences indicate that multiple externae represent multiple infections by Sacculina carcini (Cirripedia: Rhizocephala)
Rees, D. & Glenner, Henrik, 2014, In: Ecology and Evolution. 4, 16, p. 3290-3297 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Conversion of cropland to forest increases soil CH4 oxidation and abundance of CH4 oxidizing bacteria with stand age
Bárcena, T. G., D'Imperio, Ludovica, Gundersen, Per, Vesterdal, Lars, Priemé, Anders & Christiansen, Jesper Riis, 2014, In: Applied Soil Ecology. 79, p. 49-58 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Cooperative antibiotic resistance facilitates horizontal gene transfer
Wang, Q., Wei, S., Silva, A. F. & Madsen, Jonas Stenløkke, 2023, In: ISME Journal. 17, 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Cooperative microbial interactions drive spatial segregation in porous environments
Wu, Y., Fu, C., Peacock, C. L., Sørensen, Søren Johannes, Redmile-Gordon, M. A., Xiao, K. Q., Gao, C., Liu, J., Huang, Q., Li, Z., Song, P., Zhu, Y., Zhou, J. & Cai, P., 2023, In: Nature Communications. 14, 1, 14 p., 4226.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Coping with Stress: Exploring the Use of RNA-Based Approaches for the Study of Soil Microbial Communities
Nunes, I. M., 2015, Department of Biology, Faculty of Science, University of Copenhagen. 206 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
Coping with copper: legacy effect of copper on potential activity of soil bacteria following a century of exposure
Nunes, I. M., Jacquiod, S. J. A., Brejnrod, A. D., Holm, Peter Engelund, Johansen, A., Brandt, Kristian Koefoed, Priemé, Anders & Sørensen, Søren Johannes, 2016, In: F E M S Microbiology Ecology. 92, 11, 12 p., fiw175.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Crispr-Cas Repurposed: Defense and Counter-defense on Mobile Genetic Elements
Camara, Sarah, 2024, Department of Biology, Faculty of Science, University of Copenhagen. 186 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
Critical Assessment of Metagenome Interpretation: a benchmark of metagenomics software
Sczyrba, A., Hofmann, P., Belmann, P., Koslicki, D., Janssen, S., Dröge, J., Gregor, I., Majda, S., Fiedler, J., Dahms, E., Bremges, A., Fritz, A., Garrido-Oter, R., Jørgensen, T. S., Shapiro, N., Blood, P. D., Gurevich, A., Bai, Y., Turaev, D., DeMaere, M. Z. & 47 others, , 2017, In: Nature Methods. 14, 11, p. 1063-1071 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Critical Assessment of Metagenome Interpretation: the second round of challenges
Meyer, F., Fritz, A., Deng, Z. L., Koslicki, D., Lesker, T. R., Gurevich, A., Robertson, G., Alser, M., Antipov, D., Beghini, F., Bertrand, D., Brito, J. J., Brown, C. T., Buchmann, J., Buluç, A., Chen, B., Chikhi, R., Clausen, P. T. L. C., Cristian, A., Dabrowski, P. W. & 83 others, , 2022, In: Nature Methods. 19, 4, p. 429-440Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Cross-feeding während der Ausbreitung auf Oberflächen
Kovács, Á. T. & Kiesewalter, Heiko T., 2024, In: BioSpektrum. 30, 1, p. 71 1 p.Research output: Contribution to journal › Comment/debate › Research › peer-review
- Published
Crystal structure of ATVORF273, a new fold for a thermo- and acido-stable protein from the Acidianus two-tailed virus
Felisberto-Rodrigues, C., Blangy, S., Goulet, A., Vestergaard, G. A., Cambillau, C., Garrett, Roger Antony & Ortiz-Lombardía, M., 2012, In: P L o S One. 7, 10, 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Cultivation of hard-to-culture subsurface mercury-resistant bacteria and discovery of new merA gene sequences
Rasmussen, L. D., Zawadsky, C., Binnerup, S. J., Øregaard, G., Sørensen, Søren Johannes & Kroer, Niels, 2008, In: Applied and Environmental Microbiology. 74, 12, p. 3795-803 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Cultivation-independent examination of horizontal transfer and host range of an IncP-1 plasmid among gram-positive and gram-negative bacteria indigenous to the barley rhizosphere
Musovic, S., Oregaard, G., Kroer, Niels & Sørensen, Søren Johannes, 2006, In: Applied and Environmental Microbiology. 72, 10, p. 6687-6692 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Culture-dependent and -independent investigations of microbial diversity on urinary catheters
Xu, Y., Moser, Claus Ernst, Abu Al-Soud, W., Sørensen, Søren Johannes, Høiby, Niels, Nielsen, P. H. & Thomsen, T. R., 2012, In: Journal of Clinical Microbiology. 50, 12, p. 3901-3908 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Current strategies for mobilome research
Jørgensen, T. S., Kiil, A. S., Hansen, M. A., Sørensen, Søren Johannes & Hansen, Lars Hestbjerg, 2015, In: Frontiers in Microbiology. 5, 6 p., 750.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Cypris metamorphosis, injection and earliest internal development of theRrizocephalan Loxothylacus panopaei (Gissler). Crustacea: Cirripedia: Rhizocephala: Sacculinidae
Glenner, Henrik, 2001, In: Journal of Morphology. 249, 1, p. 43-75 32 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
DGGE and Pyrosequencing characterization of microbial community and methane-metabolizing microorganisms in livestock slurry surface crusts
Duan, Y. (., Abu Al-Soud, W., Sørensen, Søren Johannes, Elsgaard, L., Petersen, S. O. & Boon, N., 2012.Research output: Contribution to conference › Poster › Research
- Published
DNA extraction from dry museum beetles without conferring external morphological damage.
Gilbert, M Thomas P, Moore, W., Melchior, L. & Worobey, M., 2007, In: PLoS ONE. 2, 3, p. e272Research output: Contribution to journal › Journal article › Research › peer-review
- Published
DNA from Pre-Clovis Human Coprolites in Oregon, North America.
Gilbert, M Thomas P, Jenkins, D. L., Götherstrom, A., Naveran, N., Sanchez, J. J., Hofreiter, M., Thomsen, P. F., Binladen, J., Higham, T. F. G., Yohe, R. M., Parr, R., Cummings, L. S. & Willerslev, Eske, 2008, In: Science. 320, 5877, p. 786 - 789Research output: Contribution to journal › Journal article › Research › peer-review
- Published
DNA-and RNA-SIP Reveal Nitrospira spp. as Key Drivers of Nitrification in Groundwater-Fed Biofilters
Gülay, A., Fowler, S. J., Tatari, K., Thamdrup, B., Albrechtsen, H., Abu Al-Soud, W., Sørensen, Søren Johannes & Smets, B. F., 2019, In: mBio. 10, 6, 14 p., e01870-19.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
DPS - a rapid method for genome sequencing of DNA-containing bacteriophages directly from a single plaque
Kot, Witold, Vogensen, Finn Kvist, Sørensen, Søren Johannes & Hansen, Lars Hestbjerg, 2014, In: Journal of Virological Methods. 196, p. 152-156 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Damage and repair of ancient DNA
Mitchell, D., Willerslev, Eske & Hansen, Anders Johannes, 2005, In: Mutation Research - Fundamental and Molecular Mechanisms of Mutagenesis. 571, 1-2, p. 265-76 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Dansk flora
Frederiksen, S. E. (ed.), Rasmussen, Finn N. (ed.) & Seberg, Ole (ed.), 2006, København: Gyldendal. 701 p.Research output: Book/Report › Book › Research
- Published
Darwinian and demographic forces affecting human protein coding genes.
Nielsen, Rasmus, Hubisz, M. J., Hellmann, I., Torgerson, D., Andres, A. M., Albrechtsen, Anders, Gutenkunst, R., Adams, M. D., Cargill, M., Boyko, A., Indap, A., Bustamante, C. D. & Clark, A. G., 2009, In: Genome Research. 19, 5, p. 838-49 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Deciphering bacteria associated with a pre-parasitic stage of the root-knot nematode Meloidogyne hapla in nemato-suppressive and nemato-conducive soils
Topalović, O., Santos, S. S., Heuer, H., Nesme, Joseph, Kanfra, X., Hallmann, J., Sørensen, Søren Johannes & Vestergård, M., 2022, In: Applied Soil Ecology. 172, 9 p., 104344.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Deciphering conjugative plasmid permissiveness in wastewater microbiomes
Jacquiod, S. J. A., Brejnrod, A. D., Milani, S. M., Abu Al-Soud, W., Sørensen, Søren Johannes & Riber, Leise, Jul 2017, In: Molecular Ecology. 26, 13, p. 3556-3571 16 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Deciphering horizontal transfer of plasmids and β-lactamase protection in microbial communities
Olesen, Asmus Kalckar, 2022, Department of Biology, Faculty of Science, University of Copenhagen. 180 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
Deciphering links between bacterial interactions and spatial organization in multispecies biofilms
Liu, W., Jacquiod, S., Brejnrod, A., Russel, J., Burmølle, Mette & Sørensen, Søren Johannes, 2019, In: ISME Journal. 13, 12, p. 3054-3066 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Declare how you are limiting your environmental impact
Grogan, P., Buckeridge, K. M. & Priemé, Anders, 2021, In: Nature. 596, 7870, p. 35 1 p.Research output: Contribution to journal › Letter › Research › peer-review
- Published
Decomposition of an N-fixing invasive plant compared with a native species: consequences for ecosystem
Marchante, E., Marchante, H., Freitas, H., Kjøller, Annelise Helene & Struwe, Sten, 2019, In: Applied Soil Ecology. 138, p. 19-31Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Deepened snow enhances gross nitrogen cycling among Pan-Arctic tundra soils during both winter and summer
Xu, W., Priemé, Anders, Cooper, E. J., Mörsdorf, M. A., Semenchuk, P., Elberling, Bo, Grogan, P. & Ambus, Per Lennart, 1 Sep 2021, In: Soil Biology and Biochemistry. 160, 13 p., 108356.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Deletion of the topoisomerase III gene in the hyperthermophilic archaeon Sulfolobus islandicus results in slow growth and defects in cell cycle control
Li, X., Guo, L., Deng, Ling, Feng, D., Ren, Y., Chu, Y., She, Q. & Huang, L., 2011, In: Journal of Genetics and Genomics. 38, 6, p. 253-9 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Delivery mode and gut microbial changes correlate with an increased risk of childhood asthma
Stokholm, Jakob, Thorsen, Jonathan Jan Ilve, Blaser, M. J., Rasmussen, Morten Arendt, Hjelmsø, M., Shah, S., Christensen, E. D., Chawes, Bo Lund Krogsgaard, Bønnelykke, Klaus, Brix, S., Mortensen, M. S., Brejnrod, A., Vestergaard, G., Trivedi, Urvish, Sørensen, Søren Johannes & Bisgaard, H., 2020, In: Science Translational Medicine. 12, 569, 14 p., eaax9929.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Demographic histories and patterns of linkage disequilibrium in Chinese and Indian rhesus macaques
Hernandez, R. D., Hubisz, M. J., Wheeler, D. A., Smith, D. G., Ferguson, B., Rogers, J., Nazareth, L., Indap, A., Bourquin, T., McPherson, J., Muzny, D., Gibbs, R., Nielsen, Rasmus & Bustamante, C. D., 2007, In: Science. 316, 5822, p. 240-3 3 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Den levende permafrost
Nielsen, M. S., Andreasen, T., Elberling, Bo, Priemé, Anders & Jacobsen, C. S., 2014, In: Geografisk Orientering. 44, 1, p. 18-21 4 p.Research output: Contribution to journal › Journal article › Communication
- Published
Denitrification and N2O losses in a heath-land under changing climate conditions
Ambus, Per Lennart, Priemé, Anders, S. Carter, M., Albert, K., S. Larsen, K., Andersson, M. & Beier, C., 2007.Research output: Contribution to conference › Conference abstract for conference › Research
- Published
Denitrification rate determined by nitrate disapperance is higher than determined by nitrous oxide production with acetylene blockage
Yu, K., Struwe, Sten, Kjøller, A. & Chen, G., 2008, In: Ecological Engineering: The Journal of Ecotechnology. 32, 1, p. 90-96 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Dependence among sites in RNA evolution.
Yu, J. & Thorne, J. L., 2006, In: Molecular Biology and Evolution. 23, 8, p. 1525-37 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Dependence of paracentric inversion rate on tract length
York, T. L., Durrett, R. & Nielsen, Rasmus, 2007, In: BMC Bioinformatics. 8, p. 115Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Design and Synthesis of a Quintessential Self-Transmissible IncX1 Plasmid, pX1.0
Hansen, Lars Hestbjerg, Bentzon-Tilia, M., Bentzon-Tilia, S., Norman, A., Rafty, L. & Sørensen, Søren Johannes, May 2011, In: P L o S One. 6, 5, 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
- Published
Design of growth-dependent biosensors based on destabilized GFP for the detection of physiological behavior of Escherichia coli in heterogeneous bioreactors
Han, S., Delvigne, F., Brognaux, A., Charbon, G. E. & Sørensen, Søren Johannes, 2013, In: Biotechnology Progress. 29, 2, p. 553-563 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Detection and quantification of tetracyclines by whole cell biosensors
Hansen, Lars Hestbjerg & Sørensen, Søren Johannes, 2000, In: FEMS Microbiology Letters. 190, 2, p. 273-278Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Detection of Helicobacter rodentium-like DNA in the liver tissue of patients with chronic liver diseases by polymerase chain reaction-denaturing gradient gel electrophoresis and DNA sequence analysis
Nakonieczna, J., Stalke, P., Abu Al-Soud, W., Wadstrom, T. & Bielawski, K. P., 2010, In: Diagnostic Microbiology and Infectious Disease. 68, 3, p. 201-207 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Detection of Oxytetracycline production by Streptomyces rimosus in soil microcosms by combining whole-cell biosensors and flow cytometry
Hansen, Lars Hestbjerg, Ferrari, B., Sørensen, A. H., Veal, D. & Sørensen, Søren Johannes, 2001, In: Applied and Environmental Microbiology. 67, 1, p. 239-244Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Detection of iron-chelating and iron-reducing compounds in four brown rot fungi
Hastrup, A. C. S., Jensen, T. Ø. & Jensen, B., 2013, In: Holzforschung. 67, p. 99-106 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Development of methane emission from lambs fed milk replacer and cream for a prolonged period
Haque, M. N., Roggenbuck, M., Khanal, P., Nielsen, M. O. & Madsen, J., 2014, In: Animal Feed Science and Technology. 198, p. 38-48 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Diaphananthe adoxa sp. nov. (Orchidaceae) from Southern Ethiopia and the inclusion of Sarcorhynchus in Diaphananthe.
Rasmussen, Finn N., 1974, In: Norwegian Journal of Botany. p. 227 - 232 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Different Degrees of Niche Differentiation for Bacteria, Fungi, and Myxomycetes Within an Elevational Transect in the German Alps
Dahl, M. B., Brejnrod, A. D., Russel, J., Sørensen, Søren Johannes & Schnittler, M., 2019, In: Microbial Ecology. 78, 3, p. 764-780Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Different bulk and active bacterial communities in cryoconite from the margin and interior of the Greenland ice sheet
Stibal, M., Nielsen, M. S., Cameron, K. A., Hansen, L. H., Chandler, D. M., Wadham, J. L. & Jacobsen, C. S., 2015, In: Environmental Microbiology Reports. 7, 2, p. 293-300 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Differential responses of the gut microbiome and resistome to antibiotic exposures in infants and adults
Li, Xuan Ji, Brejnrod, A., Thorsen, J., Zachariasen, Trine, Trivedi, Urvish, Russel, J., Vestergaard, G. A., Stokholm, Jakob, Rasmussen, Morten Arendt & Sørensen, Søren Johannes, 2023, In: Nature Communications. 14, 1, 16 p., 8526.Research output: Contribution to journal › Journal article › Research › peer-review
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Differentiation-dependent activation of the human intestinal alkaline phosphatase promoter by HNF-4 in intestinal cells.
Olsen, L., Bressendorff, Simon, Troelsen, J. T. & Olsen, Jørgen, 2005, In: American Journal of Physiology: Gastrointestinal and Liver Physiology. 289, 2, p. G220-6Research output: Contribution to journal › Journal article › Research › peer-review
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Digital microscopy and image analysis
Johansen, B. B. & Rasmussen, Finn N., 1995, 1 ed. 15 p.Research output: Book/Report › Compendium/lecture notes › Education
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Direct Detection and Quantification of Horizontal Gene Transfer Using Flow Cytometry and gfp as a Reporter Gene
Sørensen, Søren Johannes, Sørensen, A. H., Hansen, Lars Hestbjerg, Oregaard, G. & Veal, D., 2003, In: Current Microbiology. 47, 2, p. 129-133 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Direct evidence of extensive diversity of HIV-1 in Kinshasa by 1960
Worobey, M., Gemmel, M., Teuwen, D. E., Haselkorn, T., Kunstman, K., Bunce, M., Muyembe, J., Kabongo, J. M., Kalengayi, R. M., Van Marck, E., Gilbert, M Thomas P & Wolinsky, S. M., 2008, In: Nature. 455, 7213, p. 661-4 3 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Discovery of multiple anti-CRISPRs highlights anti-defense gene clustering in mobile genetic elements
Pinilla Redondo, Rafael, Shehreen, S., Marino, N. D., Fagerlund, R. D., Brown, C. M., Sørensen, Søren Johannes, Fineran, P. C. & Bondy-Denomy, J., 2020, In: Nature Communications. 11, 11 p., 5652.Research output: Contribution to journal › Journal article › Research › peer-review
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Disease-induced assemblage of a plant-beneficial bacterial consortium
Berendsen, R. L., Vismans, G., Yu, K., Song, Y., de Jonge, R., Burgman, W. P., Burmølle, Mette, Herschend, J., Bakker, P. A. H. M. & Pieterse, C. M. J., 2018, In: I S M E Journal. 12, p. 1496-1507 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Disentangling the complexity of permafrost soil by using high resolution profiling of microbial community composition, key functions and respiration rates
Müller, O., Bang-Andreasen, T., White, R. A., Elberling, Bo, Taş, N., Kneafsey, T., Jansson, J. K. & Øvreås, L., 2018, In: Environmental Microbiology. 20, 12, p. 4328-4342 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Disparity in population differentiation of sex-linked and autosomal variation in sibling species of the Jaera albifrons (Isopoda) complex
Siegismund, Hans Redlef, 2003, In: Journal of Heredity. 93, 6, p. 432-9 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Disruption of ATCSLD5 results in reduced growth, reduced xylan and homogalacturonan synthase activity and altered xylan occurrence in Arabidopsis
Bernal Giraldo, A. J., Jensen, J. K., Harholt, J., Sørensen, S. O., Moller, I. E., Blaukopf, C., Johansen, B. B., Delotto, R., Pauly, M., Scheller, H. V. & Willats, W. G. T., 2007, In: Plant Journal. 52, 5, p. 791-802 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Distinct gene expression profile of Xanthomonas retroflexus engaged in synergistic multispecies biofilm formation
Hansen, L. B. S., Ren, D., Burmølle, Mette & Sørensen, Søren Johannes, 2017, In: The ISME Journal. 11, 1, p. 300-303 4 p.Research output: Contribution to journal › Letter › Research › peer-review
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Distinct rhizomicrobiota assemblages and plant performance in lettuce grown in soils with different agricultural management histories
Babin, D., Sommermann, L., Chowdhury, S. P., Behr, J. H., Sandmann, M., Neumann, G., Nesme, Joseph, Sørensen, Søren Johannes, Schellenberg, I., Rothballer, M., Geistlinger, J., Smalla, K. & Grosch, R., 2021, In: FEMS Microbiology Ecology. 97, 4, 21 p., fiab027.Research output: Contribution to journal › Journal article › Research › peer-review
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Distinct summer and winter bacterial communities in the active layer of Svalbard permafrost revealed by DNA- and RNA-based analyses
Schostag, M. D., Stibal, M., Jacobsen, C. S., Bælum, J., Tas, N., Elberling, Bo, Jansson, J., Semenchuk, P. & Priemé, Anders, 2015, In: Frontiers in Microbiology. 6, 13 p., 399.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Distribution of intra membrane particles in the pollen tube plasma membrane of Dendrobium secundum
Johansen, B. B., 1993, In: Lindleyana. p. 9-14Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Distribution of mtDNA haplotypes in North Atlantic humpback whales: the influence of behaviour on population structure
Palsbøll, P. J., Clapham, P. K., Mattila, D. K., Larsen, F., Sears, R., Siegismund, Hans Redlef & Arctander, P., 1995, In: Marine Ecology - Progress Series. 116Research output: Contribution to journal › Journal article › Research › peer-review
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Distribution patterns of postmortem damage in human mitochondrial DNA
Gilbert, M Thomas P, Willerslev, Eske, Hansen, Anders Johannes, Barnes, I., Rudbeck, L., Lynnerup, Niels & Cooper, A., 2002, In: American Journal of Human Genetics. 72, 1, p. 32-47 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Diverse gene functions in a soil mobilome
Luo, W., Xu, Z., Riber, Leise, Hansen, Lars Hestbjerg & Sørensen, Søren Johannes, 2016, In: Soil Biology & Biochemistry. 101, p. 175-183 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Diverse modulation of spa transcription by cell wall active antibiotics in Staphylococcus aureus
Nielsen, L. N., Roggenbuck, M., Haaber, J. K., Ifrah, D. & Ingmer, Hanne, 2012, In: BMC Research Notes. 5, 457, p. 457Research output: Contribution to journal › Journal article › Research › peer-review
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Diverse plant and animal genetic records from Holocene and Pleistocene sediments
Willerslev, Eske, Hansen, Anders Johannes, Binladen, J., Brand, T. B., Gilbert, M Thomas P, Shapiro, B., Bunce, M., Wiuf, C., Gilichinsky, D. A. & Cooper, A., 2003, In: Science. 300, 5620, p. 791-5Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Diversity and characterization of mercury-resistant bacteria in snow, freshwater and sea-ice brine from the High Arctic
Møller, A., Barkay, T., Abu Al-Soud, W., Sørensen, Søren Johannes, Skov, H. & Kroer, Niels, 1 Mar 2011, In: F E M S Microbiology Ecology. 75, 3, p. 390-401 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Diversity of Holocene life forms in fossil glacier ice
Willerslev, Eske, Hansen, Anders Johannes, Christensen, B., Steffensen, Jørgen Peder & Arctander, P., 1999, In: Proceedings of the National Academy of Science of the United States of America. 96, 14, p. 8017-21Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Diversity of cultural and uncultrural Pseudomonas in an Urban Waste Filed Trial
Li, L., Bergmark, L., Abu Al-Soud, W., Hansen, Lars Hestbjerg, Norman, A. & Sørensen, Søren Johannes, Nov 2010.Research output: Contribution to conference › Poster › Research
- Published
Diversity of nitrite reductase (nirK and nirS) gene fragments in forested upland and wetland soils
Priemé, Anders, Braker, G. & Tiedje, J. M., 2002, In: Applied and Environmental Microbiology. 68, p. 1893-1900 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Do Mixed-Species Biofilms Dominate in Chronic Infections? Need for in situ Visualization of Bacterial Organization
Kvich, Lasse Andersson, Burmølle, Mette, Bjarnsholt, Thomas & Lichtenberg, Mads, 2020, In: Frontiers in Cellular and Infection Microbiology. 10, 12 p., 396.Research output: Contribution to journal › Review › Research › peer-review
- Published
Do environmental pharmaceuticals affect the composition of bacterial communities in a freshwater stream? A case study of the Knivsta river in the south of Sweden
Hagberg, A., Gupta, S., Rzhepishevska, O., Fick, J., Burmølle, Mette & Ramstedt, M., 2021, In: Science of the Total Environment. 763, 10 p., 142991.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Does DAPI detect cytoplasmic DNA?
Johansen, B. B., Seberg, Ole, Petersen, G. & Arctander, P., 1995, In: American Journal of Botany. 82, 10, p. 1215-1219Research output: Contribution to journal › Journal article › Research › peer-review
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Gut microbiota in human adults with type 2 diabetes differs from non-diabetic adults
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3030
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Sequence and comparative analysis of Leuconostoc dairy bacteriophages
Research output: Contribution to conference › Poster › Research
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Extreme emission of n2o from tropical wetland soil (pantanal, South America)
Research output: Contribution to journal › Journal article › Research › peer-review
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Latest publications
Using Nanopore Sequencing Deciphering Antibiotic Resistance Dissemination In The Wastewater Systems
Research output: Book/Report › Ph.D. thesis › Research
Nitrogen and Nod factor signaling determine Lotus japonicus root exudate composition and bacterial assembly
Research output: Contribution to journal › Journal article › Research › peer-review
Optimizing cleaning strategies for biofouling in reverse osmosis membrane systems: A comparative study using a self-formed instrument
Research output: Contribution to journal › Journal article › Research › peer-review