- Published
Broad host range plasmids can invade an unexpectedly diverse fraction of a soil bacterial community
Klümper, U., Riber, Leise, Dechesne, A., Sannazzaro, A. I., Hansen, Lars Hestbjerg, Sørensen, Søren Johannes & Smets, B. F., 2015, In: I S M E Journal. 9, p. 934-945 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Broad phylogenomic sampling improves resolution of the animal tree of life
Dunn, C. W., Hejnol, A., Matus, D. Q., Pang, K., Browne, W. E., Smith, S. A., Seaver, E., Rouse, G. W., Obst, M., Edgecombe, G. D., Sørensen, Martin Vinther, Haddock, S. H. D., Schmidt-Rhaesa, A., Okuso, A., Kristensen, Reinhardt Møbjerg, Wheeler, W. C., Martindale, M. Q. & Giribet, G., 2008, In: Nature. 452, p. 745-750Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Broad-spectrum anti-CRISPR proteins facilitate horizontal gene transfer
Mahendra, C., Christie, K. A., Osuna, B. A., Pinilla Redondo, Rafael, Kleinstiver, B. P. & Bondy-Denomy, J., 2020, In: Nature Microbiology. 5, 4, p. 620-629 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Bromadiolone resistance does not respond to absence of anticoagulants in experimental populations of Norway rats.
Heiberg, A. C., Leirs, H. & Siegismund, Hans Redlef, 2003, Rats, Mice and People: Rodent Biology and Management. Singleton, G. R., Hinds, L. A., Krebs, C. J. & Spratt, D. M. (eds.). Canberra, Vol. 96. p. 461-464Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research
- Published
Bulk soil and maize rhizosphere resistance genes, mobile genetic elements and microbial communities are differently impacted by organic and inorganic fertilization
Wolters, B., Jacquiod, S. J. A., Sørensen, Søren Johannes, Widyasari-Mehta, A., Bech, T. B., Kreuzig, R. & Smalla, K., 2018, In: F E M S Microbiology Ecology. 94, 4, 13 p., fiy027.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
CLIMAITE - a three factor climate change ecosystem manipulation experiment: Geophysical Research Abstracts, Vol. 10, EGU2008-A-07931, 2008. SRef-ID: 1607-7962/gra/EGU2008-A-07931. EGU General Assembly 13-18 April 2008 in Vienna, Switzerland
N. Mikkelsen, T., Beier, C., Jonasson, S. E., Holmstrup, M., Schmidt, I. K., Ambus, P. L., Pilegaard, K., Michelsen, A., Albert, K., Andresen, L. C., Arndal, M. F., Bruun, N., Christensen, S., Danbæk, S., Gundersen, P., Jørgensen, P., J. Linden, L., Pedersen, J. K., Maraldo, K., Priemé, A. & 11 others, , 2008.Research output: Contribution to conference › Conference abstract for conference › Research
- Published
CRISPR adaptive immune systems of Archaea
Vestergaard, G. A., Garrett, Roger Antony & Shah, S. A., 2014, In: R N A Biology. 11, 2, p. 157-168 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
CRISPR families of the crenarchaeal genus Sulfolobus: bidirectional transcription and dynamic properties
Lillestøl, R. K., Shah, S. A., Brügger, K., Redder, P., Phan, Safir Hien, Christiansen, Jan & Garrett, Roger Antony, 2009, In: Molecular Microbiology. 72, 1, p. 259-272Research output: Contribution to journal › Journal article › Research › peer-review
- Published
CRISPR-Cas systems are widespread accessory elements across bacterial and archaeal plasmids
Pinilla Redondo, Rafael, Russel, J., Mayo-Muñoz, D., Shah, S. A., Garrett, Roger Antony, Nesme, Joseph, Madsen, Jonas Stenløkke, Fineran, P. C. & Sørensen, Søren Johannes, 2022, In: Nucleic Acids Research. 50, 8, p. 4315-4328Research output: Contribution to journal › Journal article › Research › peer-review
- Published
CRISPR-Cas12a targeting of ssDNA plays no detectable role in immunity
Marino, N. D., Pinilla Redondo, Rafael & Bondy-Denomy, J., 2022, In: Nucleic acids symposium series. 50, 11, p. 6414-6422 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
CRISPRCasTyper: Automated Identification, Annotation, and Classification of CRISPR-Cas Loci
Russel, J., Pinilla Redondo, Rafael, Mayo-Muñoz, D., Shah, S. A. & Sørensen, Søren Johannes, 2020, In: CRISPR Journal. 3, 6, p. 462-469 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Camillea (Xylariaceae, Ascomycota), including two new species, along a trans-Andean altitude gradient in Ecuador
Hastrup, A. C. S. & Læssøe, Thomas, 2009, In: Mycological Progress. 8, 4, p. 305-316 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Can multi-species biofilms defeat antimicrobial surfaces on medical devices?
Ramstedt, M. & Burmølle, Mette, 2022, In: Current Opinion in Biomedical Engineering. 22, 8 p., 100370.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Catch Crop Residues Stimulate N2O Emissions During Spring, Without Affecting the Genetic Potential for Nitrite and N2O Reduction
Duan, Y., Hallin, S., Jones, C. M., Priemé, Anders, Labouriau, R. & Petersen, S. O., 2018, In: Frontiers in Microbiology. 9, p. 1-13 2629.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Cell mass and cell cycle dynamics of an asynchronous budding yeast population: Experimental observations, flow cytometry data analysis, and multi-scale modeling
Lencastre Fernandes, R., Carlquist, M., Neves Lundin, A. L., Heins, A., Dutta, A., Sørensen, Søren Johannes, Jensen, R. A., Nopens, I., Eliasson Lantz, A. & Gernaey, K., 2013, In: Biotechnology and Bioengineering (Print). 110, 3, p. 812-826 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Centenarians have a diverse gut virome with the potential to modulate metabolism and promote healthy lifespan
Johansen, Joachim, Atarashi, K., Arai, Y., Hirose, N., Sørensen, Søren Johannes, Vatanen, T., Knip, M., Honda, K., Xavier, R. J., Rasmussen, Simon & Plichta, D. R., 2023, In: Nature Microbiology. 8, p. 1064-1078 18 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Centre for Anti-resistance; Limiting the occurrence of antimicrobial resistance through targeted interventions directed at plasmid transfer and stability
Riber, Leise, Burmølle, Mette, Hansen, Lars Hestbjerg & Sørensen, Søren Johannes, 2010.Research output: Contribution to conference › Poster › Research
- Published
Changes in rumen bacterial and archaeal communities over the transition period in primiparous Holstein dairy cows
Zhu, Z., Kristensen, L., Difford, G. F., Poulsen, M., Noel, S. J., Abu Al-Soud, W., Sørensen, Søren Johannes, Lassen, J., Løvendahl, P. & Højberg, O., 2018, In: Journal of Dairy Science. 101, 11, p. 9847-9862Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Changes in the flora of soil fungi following oil waste application
Llanos, C. & Kjøller, Annelise Helene, 1976, In: Oikos. 27, 3, p. 377-382 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Changes induced by heavy metals in the plant-associated microbiome of Miscanthus x giganteus
Zadel, U., Nesme, Joseph, Michalke, B., Vestergaard, G., Płaza, G. A., Schröder, P., Radl, V. & Schloter, M., 2020, In: Science of the Total Environment. 711, 10 p., 134433.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Changing Influences on Childhood Obesity: A Study of 2 Generations of the 1958 British Birth Cohort
Pinot de Moira, Angela, Power, C. & Li, L., May 2010, In: American Journal of Epidemiology.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Characterisation, dissemination and persistence of gentamicin resistant Escherichia coli from a Danish university hospital to the waste water environment
Jakobsen, L., Sandvang, D., Hansen, Lars Hestbjerg, Bagger-Skjøt, L., Westh, Henrik T., Jørgensen, C., Hansen, D. S., Pedersen, B. M., Monnet, D. L., Frimodt-Møller, N., Sørensen, Søren Johannes & Hammerum, A. M., 2008, In: Environment International. 34, 1, p. 108-15 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Characterization of Extracellular Biosurfactants Expressed by a Pseudomonas putida Strain Isolated from the Interior of Healthy Roots from Sida hermaphrodita Grown in a Heavy Metal Contaminated Soil
Bernat, P., Nesme, Joseph, Paraszkiewicz, K., Schloter, M. & Płaza, G., 2019, In: Current Microbiology. 76, 11, p. 1320-1329 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Characterization of bacterial populations in Danish raw milk cheeses made with different starter cultures by denaturating gradient gel electrophoresis and pyrosequencing
Masoud, W. M. H., Takamiya, M. K. W., Vogensen, Finn Kvist, Lillevang, S., Abu Al-Soud, W., Sørensen, Søren Johannes & Jakobsen, M., 2011, In: International Dairy Journal. 21, 3, p. 142-148 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Characterization of genetic determinants of extended-spectrum cephalosporinases (ESCs) in Escherichia coli isolates from Danish and imported poultry meat
Bergenholtz, R. D., Jørgensen, M. S., Hansen, Lars Hestbjerg, Jensen, L. B. & Hasman, H., 2009, In: Journal of Antimicrobial Chemotherapy. 64, 1, p. 207-209 2 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Characterization of genetic miscoding lesions caused by postmortem damage
Gilbert, M Thomas P, Hansen, Anders Johannes, Willerslev, Eske, Rudbeck, L., Barnes, I., Cooper, A. & Lynnerup, Niels, 2002, In: American Journal of Human Genetics. 72, 1, p. 48-61 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Characterization of host associated microbiota under influencing factors: A case study on human gut and Brachypodium root
Wei, S., 2019, Department of Biology, Faculty of Science, University of Copenhagen.Research output: Book/Report › Ph.D. thesis › Research
- Published
- Published
Characterization of the Mobilome and Microbiome of Rat Cecum
Jørgensen, T. S., 2015, Department of Biology, Faculty of Science, University of Copenhagen. 174 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
Characterization of the gut microbiota in leptin deficient obese mice: correlation to inflammatory and diabetic parameters
Ellekilde, M., Krych, Lukasz, Hansen, Camilla Hartmann Friis, Hufeldt, M. R., Dahl, K., Hansen, Lars Hestbjerg, Sørensen, Søren Johannes, Vogensen, Finn Kvist, Nielsen, Dennis Sandris & Hansen, Axel Kornerup, 2014, In: Research in Veterinary Science. 96, 2, p. 241-250 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Cheirostylis seidenfadeniana sp. nov. (Orchidaceae) from India
Kumar, C. S. & Rasmussen, Finn N., 1987, In: Nordic Journal of Botany. 7, 4, p. 409-411 3 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Chlorophyll f-driven photosynthesis in a cavernous cyanobacterium
Behrendt, L., Brejnrod, A. D., Schliep, M., Sørensen, Søren Johannes, Larkum, A. W. D. & Kühl, Michael, 2015, In: The ISME Journal. 9, 9, p. 2108-2111 4 p.Research output: Contribution to journal › Letter › Research › peer-review
- Published
Chromosomal insertion of the entire Escherichia coli lactose operon, into two strains of Pseudomonas, using a modified mini-Tn5 delivery system
Hansen, Lars Hestbjerg, Sørensen, Søren Johannes & Jensen, L. B., 1997, In: Gene. 186, 2, p. 167-173Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Climatic and seasonal regulation of seed germination and seedling development inferred from experiments with Dactylorhiza majalis in symbiotic culture.
Rasmussen, Hanne Nina & Rasmussen, Finn N., 1990, In: American Journal of Botany. 6 (suppl), p. 47-47 1 p.Research output: Contribution to journal › Conference abstract in journal › Research
- Published
Co-existence in multispecies biofilm communities
Røder, Henriette Lyng, 2017, Department of Biology, Faculty of Science, University of Copenhagen.Research output: Book/Report › Ph.D. thesis › Research
- Published
Co-localization of antibiotic resistance genes is widespread in the infant gut microbiome and associates with an immature gut microbial composition
Li, Xuan Ji, Brejnrod, A., Trivedi, Urvish, Russel, J., Thorsen, J., Shah, S. A., Vestergaard, G. A., Rasmussen, Morten Arendt, Nesme, Joseph, Bisgaard, H., Stokholm, Jakob & Sørensen, Søren Johannes, 2024, In: Microbiome. 12, 1, 18 p., 87.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Co-selection of antibiotic resistance genes, and mobile genetic elements in the presence of heavy metals in poultry farm environments
Mazhar, S. H., Li, Xuan Ji, Rashid, A., Su, J., Xu, J., Brejnrod, A. D., Su, J., Wu, Y., Zhu, Y., Zhou, S. G., Feng, R. & Rensing, C., 2021, In: Science of the Total Environment. 755, Part 2, 10 p., 142702.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Coexistence facilitates interspecific biofilm formation in complex microbial communities
Madsen, Jonas Stenløkke, Røder, Henriette Lyng, Russel, J., Sørensen, Helle, Burmølle, Mette & Sørensen, Søren Johannes, 2016, In: Environmental Microbiology. 18, 8, p. 2565–2574Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Colonic lesions, cytokine profiles, and gut microbiota in plasminogen-deficient mice
Vestergaard, Bill, Krych, Lukasz, Lund, L. R., Jørgensen, B. M. P., Hansen, Lars Hestbjerg, Jensen, Henrik Elvang, Nielsen, Dennis Sandris & Hansen, Axel Kornerup, 2015, In: Comparative Medicine. 65, 5, p. 382-397 16 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Combined effects of drought, temperature and CO2 on GHG emissions from temperate shrub-land
Ambus, Per Lennart, Priemé, Anders, S. Carter, M., Albert, K., S. Larsen, K., Andersson, M. & Beier, C., 2007.Research output: Contribution to conference › Conference abstract for conference › Research
- Published
Combined use of Bacteriophage K and a novel Bacteriophage to reduce Staphylococcus aureus biofilm formation
Alves, D. R., Gaudion, A., Bean, J. E., Esteban, P. P., Arnot, T. C., Harper, D. R., Kot, Witold, Hansen, Lars Hestbjerg, Enright, M. C. & Jenkins, A. T. A., 2014, In: Applied and Environmental Microbiology. 80, 21, p. 6694-6703 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Combining a novel biofilm reactor with a constructed wetland for rural, decentralized wastewater treatment
Zhang, R., Liu, X., Wang, L., Xu, P., Li, K., Chen, X., Meng, R., Pu, Y., Yang, X., Rousseau, D. P. L. & Van Hulle, S. W. H., 2023, In: Chemical Engineering Journal. 455, 11 p., 140906.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Combining reverse osmosis and microbial degradation for remediation of drinking water contaminated with recalcitrant pesticide residue
Schostag, M. D., Gobbi, Alex, Fini, M. N., Ellegaard-Jensen, L., Aamand, J., Hansen, Lars Hestbjerg, Muff, J. & Albers, C. N., 2022, In: Water Research. 216, 12 p., 118352.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Comment on "Protein Sequences from Mastodon and Tyrannosaurus rex Revealed by Mass Spectrometry".
Buckley, M., Walker, A., Ho, S. Y. W., Yang, Y., Smith, C., Ashton, P., Oates, J. T., Cappellini, E., Koon, H., Penkman, K., Elsworth, B., Ashford, D., Solazzo, C., Andrews, P., Strahler, J., Shapiro, B., Ostrom, P., Gandhi, H., Miller, W., Raney, B. & 8 others, , 2008, In: Science. 319, 5859, p. 33Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Community structure of the metabolically active rumen bacterial and archaeal communities of dairy cows over the transition period
Zhu, Z., Noel, S. J., Difford, G. F., Abu Al-Soud, W., Brejnrod, A. D., Sørensen, Søren Johannes, Lassen, J., Løvendahl, P. & Højberg, O., 8 Nov 2017, In: PLoS ONE. 12, 11, 24 p., e0187858.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Community-intrinsic properties enhance keratin degradation from bacterial consortia
Nasipuri, P., Herschend, J., Brejnrod, A. D., Madsen, Jonas Stenløkke, Espersen, R., Svensson, B., Burmølle, Mette, Jacquiod, S. & Sørensen, Søren Johannes, 2020, In: PLoS ONE. 15, 1, 26 p., e0228108.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Community-wide changes reflecting bacterial interspecific interactions in multispecies biofilms
Sadiq, F. A., Burmølle, Mette, Heyndrickx, M., Flint, S., Lu, W., Chen, W., Zhao, J. & Zhang, H., 2021, In: Critical Reviews in Microbiology. 47, 3, p. 338-358 21 p.Research output: Contribution to journal › Review › Research › peer-review
- Published
Comparative Genomics Analysis of Keratin-Degrading Chryseobacterium Species Reveals Their Keratinolytic Potential for Secondary Metabolite Production
Kang, D., Shoaie, S., Jacquiod, S., Sørensen, Søren Johannes & Ledesma-Amaro, R., 2021, In: Microorganisms. 9, 5, 15 p., 1042.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Comparative Genomics of Novel Agrobacterium G3 Strains Isolated From the International Space Station and Description of Agrobacterium tomkonis sp. nov.
Singh, N. K., Lavire, C., Nesme, Joseph, Vial, L., Nesme, X., Mason, C. E., Lassalle, F. & Venkateswaran, K., 2021, In: Frontiers in Microbiology. 12, 15 p., 765943.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Comparative analysis of bacterial communities in a potato field as determined by pyrosequencing
Inceoglu, Ö., Abu Al-Soud, W., Salles, J. F., Semenov, A. V. & van Elsas, J. D., 1 Aug 2011, In: P L o S One. 6, 8, p. e23321 (1-10) 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Gut microbiota in human adults with type 2 diabetes differs from non-diabetic adults
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Sequence and comparative analysis of Leuconostoc dairy bacteriophages
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Extreme emission of n2o from tropical wetland soil (pantanal, South America)
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Optimizing cleaning strategies for biofouling in reverse osmosis membrane systems: A comparative study using a self-formed instrument
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Interphylum dissemination of NDM-5-positive plasmids in hospital wastewater from Fuzhou, China: a single-centre, culture-independent, plasmid transmission study
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Using Nanopore Sequencing Deciphering Antibiotic Resistance Dissemination In The Wastewater Systems
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