Microbiology

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  1. Published

    Functional groups of bacteria on decomposing ash litter.

    Struwe, Sten & Kjøller, Annelise Helene, 1985, In: Pedobiologia. 28, 6, p. 367-376 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  2. Published

    Functional groups of microfungi on decomposing ash litter

    Kjøller, Annelise Helene & Struwe, Sten, 1987, In: Pedobiologia. 30, 3, p. 151-159 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Fungal accumulation of metals from building materials during brown rot wood decay

    Hastrup, A. C. S., Jensen, B. & Jellison, J., 2014, In: Archives of Microbiology. 196, 8, p. 565-574 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Fungi and bacteria in the beds of rural and urban infants correlate with later risk of atopic diseases

    Lehtimäki, J., Gupta, S., Hjelmsø, M., Shah, S., Thorsen, Jonathan Jan Ilve, Rasmussen, Morten Arendt, Soverini, M., Li, Xuan Ji, Russel, J., Trivedi, Urvish, Brix, S., Bønnelykke, Klaus, Chawes, Bo Lund Krogsgaard, Bisgaard, H., Sørensen, Søren Johannes & Stokholm, Jakob, 2023, In: Clinical and Experimental Allergy. 53, 12, p. 1268-1278 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    GENETIC AND MORPHOLOGICAL VARIATION OF POPULATIONS BELONGING TO THE BULINUS TRUNCATUS/TROPICUS COMPLEX (GASTROPODA; PLANORBIDAE) IN SOUTH WESTERN ZIMBABWE

    Mukaratirwa, S., Kristensen, T. K., Siegismund, Hans Redlef & Chandiwana, S. K., 1998, In: Journal of Molluscan Studies. 64, Part 4, p. 435-446

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Genera Orchidacearum: Epidendroideae (Part two)

    Pridgeon, A. M. (ed.), Cribb, P. J. (ed.), Chase, M. W. & Rasmussen, Finn N. (ed.), 2009, Oxford: Oxford University Press. 586 p.

    Research output: Book/Report › Book › Research › peer-review

  7. Published

    Genes under positive selection in Escherichia coli

    Petersen, L., Bollback, J. P., Dimmic, M., Hubisz, M. & Nielsen, Rasmus, 2007, In: Genome Research. 17, 9, p. 1336-43 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Genetic Characterizations of IncX-plasmids of the Enterobacteriaceae

    Norman, A., 2009, Biologisk Institut: Museum Tusculanum.

    Research output: Book/Report › Ph.D. thesis › Research

  9. Published

    Genetic barcoding of dark-spored myxomycetes (Amoebozoa): identification, evaluation and application of a sequence similarity threshold for species differentiation in NGS studies

    Dahl, M. B., Brejnrod, A. D., Unterseher, M., Hoppe, T., Feng, Y., Novozhilov, Y., Sørensen, Søren Johannes & Schnittler, M., Mar 2018, In: Molecular Ecology Resources. 18, 2, p. 306-318 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Genetic labelling and application of the isoproturonmineralizing Sphingomonas sp. strain SRS2 in soil and rhizosphere

    Kristensen, K. E., Jacobsen, C. S., Hansen, Lars Hestbjerg, Aamand, J., Morgan, J. A. W., Sternberg, C. & Sørensen, S. R., 2006, In: Letters in Applied Microbiology. 43, 3, p. 280-286 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Genetic subspecies diversity of the chimpanzee CD4 virus-receptor gene

    Hvilsom, C., Carlsen, F., Siegismund, Hans Redlef, Corbet, S., Nerrienet, E. & Fomsgaard, A., 2008, In: Genomics. 92, 5, p. 322-328 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Genome binning of viral entities from bulk metagenomics data

    Johansen, Joachim, Plichta, D. R., Nissen, J. N., Jespersen, Marie Louise, Shah, S. A., Deng, Ling, Stokholm, Jakob, Bisgaard, H., Nielsen, Dennis Sandris, Sørensen, Søren Johannes & Rasmussen, Simon, 2022, In: Nature Communications. 13, 12 p., 965.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Genome sequence of Arthrobacter antarcticus strain W2, isolated from a slaughterhouse

    Herschend, J., Raghupathi, P. K., Røder, Henriette Lyng, Sørensen, Søren Johannes & Burmølle, Mette, 2016, In: Genome Announcements. 4, 2, 2 p., e00073-16.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Genome sequence of Kocuria palustris strain W4

    Herschend, J., Raghupathi, P. K., Røder, Henriette Lyng, Sørensen, Søren Johannes & Burmølle, Mette, 2016, In: Genome Announcements. 4, 2, 1 p., e00074-16.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Genome sequence of Kocuria varians G6 ssolated from a slaughterhouse in Denmark

    Raghupathi, P. K., Herschend, J., Røder, Henriette Lyng, Sørensen, Søren Johannes & Burmølle, Mette, 2016, In: Genome Announcements. 4, 2, 2 p., e00076-16.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Genome sequence of Psychrobacter cibarius strain W1

    Raghupathi, P. K., Herschend, J., Røder, Henriette Lyng, Sørensen, Søren Johannes & Burmølle, Mette, 2016, In: Genome Announcements. 4, 3, 1 p., e00078-16.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Genome sequence of Leuconostoc mesenteroides subsp. cremoris strain T26, isolated from mesophilic undefined cheese starter

    Pedersen, T. B., Kot, Witold, Hansen, L. H., Sørensen, Søren Johannes, Broadbent, J. R., Vogensen, Finn Kvist & Ardö, Ylva Margareta, 2014, In: Genome Announcements. 2, 3, 1 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Genome sequences of two Leuconostoc pseudomesenteroides strains isolated from Danish dairy starter cultures

    Pedersen, T. B., Kot, Witold, Hansen, L. H., Sørensen, Søren Johannes, Broadbent, J. R., Vogensen, Finn Kvist & Ardö, Ylva Margareta, 2014, In: Genome Announcements. 2, 3, p. 2 e00484-14.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Genome-wide detection of selection and other evolutionary forces

    Xu, Z. & Zhou, R., 2015, Bacterial pangenomics: methods and protocols. Mengoni, A., Galardini, M. & Fondi, M. (eds.). Springer, p. 271-287 17 p. (Methods in Molecular Biology).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  20. Published

    Genome-wide discovery and verification of novel structured RNAs in Plasmodium falciparum

    Mourier, T., Carret, C., Kyes, S., Christodoulou, Z., Gardner, P. P., Jeffares, D. C., Pinches, R., Barrell, B., Berriman, M., Griffiths-Jones, S., Ivens, A., Newbold, C. & Pain, A., 2008, In: Genome Research. 18, 2, p. 281-92 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Genome-wide patterns of nucleotide polymorphism in domesticated rice

    Caicedo, A. L., Williamson, S. H., Hernandez, R. D., Boyko, A., Fledel-Alon, A., York, T. L., Polato, N. R., Olsen, K. M., Nielsen, Rasmus, McCouch, S. R., Bustamante, C. D. & Purugganan, M. D., 2007, In: PLoS Genetics. 3, 9, p. 1745-56 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Genomic and exoproteomic analyses of cold- and alkaline-adapted bacteria reveal an abundance of secreted subtilisin-like proteases

    Lylloff, J. E., Hansen, L. B. S., Jepsen, M., Sanggaard, K. W., Vester, J. K., Enghild, J. J., Sørensen, Søren Johannes, Stougaard, P. & Glaring, M. A., 2016, In: Microbial Biotechnology. 9, 2, p. 245-256 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Genotype and SNP calling from next-generation sequencing data

    Nielsen, Rasmus, Paul, J. S., Albrechtsen, Anders & Song, Y. S., 2011, In: Nature Reviews. Genetics. 12, 6, p. 443-451 9 p.

    Research output: Contribution to journal › Review › Research › peer-review

  24. Published

    Genotypic variations and interspecific interactions modify gene expression and biofilm formation of Xanthomonas retroflexus

    Jacquiod, S., Olsen, N. M. C., Blouin, M., Røder, Henriette Lyng & Burmølle, Mette, 2023, In: Environmental Microbiology. 25, 12, 3225-3238.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Genus-specific protein binding to the large clusters of DNA repeats (short regularly spaced repeats) present in Sulfolobus genomes

    Peng, Xu, Brügger, K., Shen, B., Chen, L., She, Q. & Garrett, Roger Antony, 2003, In: Journal of Bacteriology. 185, 8, p. 2410-7 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    Geologically ancient DNA: fact or artefact?

    Hebsgaard, M. B., Phillips, M. J. & Willerslev, Eske, 2005, In: Trends in Microbiology. 13, 5, p. 212-220

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    Getting the best out of long-wavelength X-rays: de novo chlorine/sulfur SAD phasing of a structural protein from ATV

    Goulet, A., Vestergaard, G. A., Felisberto-Rodrigues, C., Campanacci, V., Garrett, Roger Antony, Cambillau, C. & Ortiz-Lombardía, M., 2010, In: Acta Crystallographica. Section D: Biological Crystallography. 66, Pt 3, p. 304-308 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    Glossary

    Rasmussen, Finn N., 2005, Genera Orchidacearum. Pridgeon, A. M., Cribb, P., Chase, M. W. & Rasmussen, F. N. (eds.). Oxford: Oxford University Press, Vol. 4. p. 627-628

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research

  29. Published

    Green fluorescent protein (GFP) leakage from microbial biosensors provides useful information for the evaluation of the scale-down effect

    Delvigne, F., Brognaux, A., Francis, F., Twizere, J., Gorret, N., Sørensen, Søren Johannes & Thonart, P., 2011, In: Biotechnology Journal. 6, 8, p. 968-978 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    Group-specific PCR primers to amplify 24S α-subunit rRNA genes from Kinetoplastida (Protozoa) used in denaturing gradient gel electrophoresis

    Rasmussen, L. D., Ekelund, Flemming, Hansen, Lars Hestbjerg, Sørensen, Søren Johannes & Johnsen, K., 2001, In: Microbial Ecology. 42, 2, p. 109-115

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    Growth and molting in epizoic pedunculate barnacles genus Octolasmis (Crustacea: Thecostraca: Cirripedia: Thoracica).

    Høeg, Jens Thorvald, Glenner, Henrik & Høeg, Jens Thorvald, 2004, In: Journal of Morphology. 260, 2, p. 154-64 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    Growth rate of rhizosphere bacteria measured directly by the tritiated thymidine incorporation technique

    Christensen, Henrik, Jensen, Dan Funck & Kjøller, Annelise Helene, 1989, In: Soil Biology and Biochemistry. 21, 1, p. 113-117

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    Gunnar Seidenfaden and the Thai orchid collection in Copenhagen, Denmark

    Sterll, M. & Rasmussen, Finn N., 1988, In: Orchids. 57, 11

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    Gunnar Seidenfaden's contributions to orchidology and conception of taxonomy and botanical science

    Rasmussen, Finn N., 2008, The Fourth International ConferenceonThe Comparative Biology of the MonocotyledonsThe Fifth International Symposium on Grass Systematics and Evolution H.C. Ørsted Institute, University of Copenhagen11-15 August 2008 · Copenhagen, Denmark. Museum Tusculanum, p. 50-50 1 p.

    Research output: Chapter in Book/Report/Conference proceeding › Conference abstract in proceedings › Research

  35. Published

    Gut microbiota composition is correlated to grid floor induced stress and behavior in the BALB/c mouse

    Bendtsen, K. M. B., Krych, Lukasz, Sørensen, Dorte Bratbo, Pang, W., Nielsen, Dennis Sandris, Josefsen, K., Hansen, Lars Hestbjerg, Sørensen, Søren Johannes & Hansen, Axel Kornerup, 2012, In: P L o S One. 7, 10, 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    Gut microbiota in human adults with type 2 diabetes differs from non-diabetic adults

    Larsen, Nadja, Vogensen, Finn Kvist, van der Berg, Franciscus Winfried J, Nielsen, Dennis Sandris, Andreasen, Anne Sofie, Pedersen, Bente Klarlund, Abu Al-Soud, W. M. A. F., Sørensen, Søren Johannes, Hansen, Lars Hestbjerg & Jakobsen, M., 2010, In: PLoS ONE. 5, 2, p. e9085 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    Heavy metal exposure causes changes in the metabolic health-associated gut microbiome and metabolites

    Li, Xuan Ji, Brejnrod, A. D., Ernst, M., Rykær, M., Herschend, J., Olsen, N. M. C., Dorrestein, P. C., Rensing, C. & Sørensen, Søren Johannes, 2019, In: Environment International. 126, p. 454-467 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    Herbivory and dominance shifts among exotic and congeneric native plant species during plant community establishment

    Engelkes, T., Meisner, A., Morriën, E., Kostenko, O., van der Putten, W. H. & Macel, M., 2016, In: Oecologia. 180, 2, p. 507-517 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    Herbivory by the wevil Strophosoma melanogrammum, causes severalfold increase in emission of monoterpenes from young Norway spruce (Picea abies)

    Priemé, Anders, Knudsen, T. B., Glasius, M. & Christensen, Søren, 2000, In: Atmospheric Environment. 34, p. 711-718

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    Heterogeneity in recombinant protein production

    Schalén, M., Johanson, T., Neves Lundin, A. L., Sørensen, Søren Johannes & Lantz, A. E., 2012, In: New Biotechnology. 29, Supplement, 0, p. S78 1 p.

    Research output: Contribution to journal › Conference abstract in journal › Research › peer-review

  41. Published

    High cell densities favor lysogeny: induction of an H20 prophage is repressed by quorum sensing and enhances biofilm formation in Vibrio anguillarum

    Tan, D., Hansen, Mads Frederik, de Carvalho, L. N., Røder, Henriette Lyng, Burmølle, Mette, Middelboe, Mathias & Svenningsen, Sine Lo, 2020, In: The ISME Journal. 14, 7, p. 1731-1742 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    High frequencies of antibiotic resistance genes in infants' meconium and early fecal samples

    Gosalbes, M. J., Vallès, Y., Jiménez-Hernández, N., Balle, C., Riva, P., Miravet-Verde, S., de Vries, Lisbeth Elvira, Llop, S., Agersø, Y., Sørensen, Søren Johannes, Ballester, F. & Francino, M. P., 2016, In: Journal of Developmental Origins of Health and Disease. 7, 01, p. 35-44 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    High nitrogen-fixing rates associated with ground-covering mosses in a tropical mountain cloud forest will decrease drastically in a future climate

    Permin, Aya Tora Foged, Horwath, A. B., Metcalfe, D. B., Priemé, Anders & Rousk, Kathrin, 2022, In: Functional Ecology. 36, 7, p. 1772-1781 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    High prevalence of biofilm synergy among bacterial soil isolates in cocultures indicates bacterial interspecific cooperation

    Ren, D., Madsen, Jonas Stenløkke, Sørensen, Søren Johannes & Burmølle, Mette, 11 Jan 2015, In: ISME Journal. 9, p. 81-89 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    High robustness of soil bacteria and funghi to multifactorial climate change manipulations

    Bergmark, L., Haugwitz-Hardenberg-Reventlow, M. S., Sørensen, Søren Johannes & Priemé, Anders, 2012.

    Research output: Contribution to conference › Conference abstract for conference › Research

  46. Published

    High throughput sequencing applied to analyze microbial communities in different animal models with an interpretation in a human health perspectives

    Li, Xuan Ji, 2019, Department of Biology, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  47. Published

    High variation and very low differentiation in wide ranging plains zebra (Equus quagga): insights from mtDNA and microsatellites

    Lorenzen, Eline, Arctander, P. & Siegismund, Hans Redlef, 2008, In: Molecular Ecology. 17, 12, p. 2812-2824 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    High-resolution melt analysis for rapid comparison of bacterial community compositions

    Hjelmsø, M. H., Hansen, Lars Hestbjerg, Bælum, J., Feld, L., Holben, W. E. & Jacobsen, C. S., 2014, In: Applied and Environmental Microbiology. 80, 12, p. 3568-3575 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    High-resolution single-molecule long-fragment rRNA gene amplicon sequencing of bacterial and eukaryotic microbial communities

    Fang, Chao, Sun, X., Fan, F., Zhang, X., Wang, O., Zheng, Haotian, Peng, Z., Luo, X., CHEN, Ao, Zhang, W., Drmanac, R., Peters, B. A., Song, Z. & Kristiansen, Karsten, 2023, In: Cell Reports Methods. 3, 3, 16 p., 100437.

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    High-throughput screening alternative to crystal violet biofilm assay combining fluorescence quantification and imaging

    Amador Hierro, Cristina Isabel, Stannius, R. O., Røder, Henriette Lyng & Burmølle, Mette, 2021, In: Journal of Microbiological Methods. 190, 5 p., 106343.

    Research output: Contribution to journal › Letter › Research › peer-review

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