- 2020
- Published
Composted sewage sludge influences the microbiome and persistence of human pathogens in soil
Major, N., Schierstaedt, J., Jechalke, S., Nesme, Joseph, Ban, S. G., Černe, M., Sørensen, Søren Johannes, Ban, D. & Schikora, A., 2020, In: Microorganisms. 8, 7, 14 p., 1020.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Anti-CRISPR protein applications: natural brakes for CRISPR-Cas technologies
Marino, N. D., Pinilla Redondo, Rafael, Csörgő, B. & Bondy-Denomy, J., 2020, In: Nature Methods. 17, 5, p. 471-479 9 p.Research output: Contribution to journal › Review › Research › peer-review
- Published
Jagten på den gode opgave: Identifikation af kriterier og implementering af peer feedback i praksis
Mark Jensen, L., Burmølle, Mette, Johannsen, B. F., Bruun, Jesper & Ellegaard, M., 2020, In: Dansk universitetspædagogisk tidsskrift [online]. 15, 28, p. 16-30 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Epigenetic landscape links upper airway microbiota in infancy with allergic rhinitis at 6 years of age
Morin, A., McKennan, C. G., Pedersen, C. T., Stokholm, Jakob, Chawes, Bo Lund Krogsgaard, Schoos, A. M., Naughton, K. A., Thorsen, Jonathan Jan Ilve, Mortensen, M. S., Vercelli, D., Trivedi, Urvish, Sørensen, Søren Johannes, Bisgaard, H., Nicolae, D. L., Bønnelykke, Klaus & Ober, C., 2020, In: Journal of Allergy and Clinical Immunology. 146, 6, p. 1358-1366Research output: Contribution to journal › Journal article › Research › peer-review
- Published
AgNO3 sterilizes grains of barley (Hordeum vulgare) without inhibiting germination - a necessary tool for plant–microbiome research
Munkager, V., Vestergård, M., Priemé, Anders, Altenburger, A., de Visser, E., Johansen, Jesper Liengaard & Ekelund, Flemming, 2020, In: Plants. 9, 3, 16 p., 372.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Community-intrinsic properties enhance keratin degradation from bacterial consortia
Nasipuri, P., Herschend, J., Brejnrod, A. D., Madsen, Jonas Stenløkke, Espersen, R., Svensson, B., Burmølle, Mette, Jacquiod, S. & Sørensen, Søren Johannes, 2020, In: PLoS ONE. 15, 1, 26 p., e0228108.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The environmental contribution to the dissemination of carbapenem and (fluoro)quinolone resistance genes by discharged and reused wastewater effluents: The role of cellular and extracellular DNA
Oliveira, M., Nunes, M., Barreto Crespo, M. T. & Silva, A. F., 2020, In: Water Research. 182, 13 p., 116011.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Plasmids, CRISPR-Cas and Anti-CRIPSRs: Uncovering the secret lives of mobile genetic elements
Pinilla Redondo, Rafael, 2020, Department of Biology, Faculty of Science, University of Copenhagen. 217 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
Discovery of multiple anti-CRISPRs highlights anti-defense gene clustering in mobile genetic elements
Pinilla Redondo, Rafael, Shehreen, S., Marino, N. D., Fagerlund, R. D., Brown, C. M., Sørensen, Søren Johannes, Fineran, P. C. & Bondy-Denomy, J., 2020, In: Nature Communications. 11, 11 p., 5652.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Type IV CRISPR-Cas systems are highly diverse and involved in competition between plasmids
Pinilla Redondo, Rafael, Mayo-Muñoz, D., Russel, J., Garrett, Roger Antony, Randau, L., Sørensen, Søren Johannes & Shah, S. A., 2020, In: Nucleic Acids Research. 48, 4, p. 2000-2012 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Ecological succession in the vaginal microbiota during pregnancy and birth
Rasmussen, Morten Arendt, Thorsen, Jonathan Jan Ilve, Dominguez-Bello, M. G., Blaser, M. J., Mortensen, M. S., Brejnrod, A. D., Shah, S. A., Hjelmsø, M. H., Lehtimäki, J., Trivedi, Urvish, Bisgaard, H., Sørensen, Søren Johannes & Stokholm, Jakob, 2020, In: The ISME Journal. 14, 9, p. 2325-2335 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
CRISPRCasTyper: Automated Identification, Annotation, and Classification of CRISPR-Cas Loci
Russel, J., Pinilla Redondo, Rafael, Mayo-Muñoz, D., Shah, S. A. & Sørensen, Søren Johannes, 2020, In: CRISPR Journal. 3, 6, p. 462-469 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Unravelling interspecies interactions across heterogeneities in complex biofilm communities
Røder, Henriette Lyng, Olsen, N. M. C., Whiteley, M. & Burmølle, Mette, 2020, In: Environmental Microbiology. 22, 1, p. 5-16 12 p.Research output: Contribution to journal › Review › Research › peer-review
- Published
Enrichment of endophytic Actinobacteria in roots and rhizomes of Miscanthus × giganteus plants exposed to diclofenac and sulfamethoxazole
Sauvêtre, A., Węgrzyn, A., Yang, L., Vestergaard, G., Miksch, K., Schröder, P. & Radl, V., 2020, In: Environmental Science and Pollution Research. 27, 11, p. 11892-11904 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Salmonella persistence in soil depends on reciprocal interactions with indigenous microorganisms
Schierstaedt, J., Jechalke, S., Nesme, Joseph, Neuhaus, K., Sørensen, Søren Johannes, Grosch, R., Smalla, K. & Schikora, A., 2020, In: Environmental Microbiology. 22, 7, p. 2639-2652 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Low Turnover of Soil Bacterial rRNA at Low Temperatures
Schostag, M. D., Albers, C. N., Jacobsen, C. S. & Priemé, Anders, 2020, In: Frontiers in Microbiology. 11, 5 p., 962.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A converging subset of soil bacterial taxa is permissive to the IncP-1 plasmid pKJK5 across a range of soil copper contamination
Song, J., Klümper, U., Riber, Leise, Dechesne, A., Smets, B. F., Sørensen, Søren Johannes & Brandt, Kristian Koefoed, 2020, In: FEMS Microbiology Ecology. 96, 11, 10 p., fiaa200.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The T-shirt microbiome is distinct between individuals and shaped by washing and fabric type
Sterndorff, E. B., Russel, J., Jakobsen, J., Mortensen, M. S., Gori, K., Herschend, J. & Burmølle, Mette, 2020, In: Environmental Research. 185, 9 p., 109449.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Delivery mode and gut microbial changes correlate with an increased risk of childhood asthma
Stokholm, Jakob, Thorsen, Jonathan Jan Ilve, Blaser, M. J., Rasmussen, Morten Arendt, Hjelmsø, M., Shah, S., Christensen, E. D., Chawes, Bo Lund Krogsgaard, Bønnelykke, Klaus, Brix, S., Mortensen, M. S., Brejnrod, A., Vestergaard, G., Trivedi, Urvish, Sørensen, Søren Johannes & Bisgaard, H., 2020, In: Science Translational Medicine. 12, 569, 14 p., eaax9929.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Interspecific interactions in dual-species biofilms of soil bacteria: effects of fertilization practices
Sun, X., Cai, P., Sørensen, Søren Johannes, Mortimer, M., Gao, C., Huang, Q., Wang, Y., Lin, X., Wu, Y., Zhu, D. & Chen, R., 2020, In: Journal of Soils and Sediments. 20, 3, p. 1494-1501 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
High cell densities favor lysogeny: induction of an H20 prophage is repressed by quorum sensing and enhances biofilm formation in Vibrio anguillarum
Tan, D., Hansen, Mads Frederik, de Carvalho, L. N., Røder, Henriette Lyng, Burmølle, Mette, Middelboe, Mathias & Svenningsen, Sine Lo, 2020, In: The ISME Journal. 14, 7, p. 1731-1742 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Persistence and progression of staphylococcal infection in the presence of public goods
Trivedi, Urvish, Fell, C., Madsen, Jonas Stenløkke, Everett, J., Burmølle, Mette, Rumbaugh, K. P. & Sørensen, Søren Johannes, 2020, In: npj Biofilms and Microbiomes. 6, 5 p., 55.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Antibiotic susceptibility of cystic fibrosis lung microbiome members in a multispecies biofilm
Vandeplassche, E., Sass, A., Ostyn, L., Burmølle, Mette, Kragh, K. N., Bjarnsholt, Thomas, Coenye, T. & Crabbé, A., 2020, In: Biofilm. 2, 9 p., 100031.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The evolution of virulence in Pseudomonas aeruginosa during chronic wound infection
Vanderwoude, J., Fleming, D., Azimi, S., Trivedi, Urvish, Rumbaugh, K. P. & Diggle, S. P., 2020, In: Proceedings of the Royal Society B: Biological Sciences. 287, 1937, 10 p., 20202272.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Rhizosphere microbial communities associated to rose replant disease: links to plant growth and root metabolites
Yim, B., Baumann, A., Grunewaldt-Stöcker, G., Liu, B., Beerhues, L., Zühlke, S., Sapp, M., Nesme, Joseph, Sørensen, Søren Johannes, Smalla, K. & Winkelmann, T., 2020, In: Horticulture Research. 7, 16 p., 144.Research output: Contribution to journal › Journal article › Research › peer-review
Most downloads
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Gut microbiota in human adults with type 2 diabetes differs from non-diabetic adults
Research output: Contribution to journal › Journal article › Research › peer-review
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3030
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Sequence and comparative analysis of Leuconostoc dairy bacteriophages
Research output: Contribution to conference › Poster › Research
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Extreme emission of n2o from tropical wetland soil (pantanal, South America)
Research output: Contribution to journal › Journal article › Research › peer-review
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Optimizing cleaning strategies for biofouling in reverse osmosis membrane systems: A comparative study using a self-formed instrument
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Interphylum dissemination of NDM-5-positive plasmids in hospital wastewater from Fuzhou, China: a single-centre, culture-independent, plasmid transmission study
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Using Nanopore Sequencing Deciphering Antibiotic Resistance Dissemination In The Wastewater Systems
Research output: Book/Report › Ph.D. thesis › Research