Microbiology

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  1. Published

    Short- and long-term impacts of azithromycin treatment on the gut microbiota in children: a double-blind, randomized, placebo-controlled trial

    Wei, S., Mortensen, M. S., Stokholm, Jakob, Brejnrod, A. D., Thorsen, Jonathan Jan Ilve, Rasmussen, Morten Arendt, Trivedi, Urvish, Bisgaard, H. & Sørensen, Søren Johannes, 2018, In: EBioMedicine. 38, p. 265-272

    Research output: Contribution to journal › Journal article › Research › peer-review

  2. Published

    Impact of intensive lifestyle intervention on gut microbiota composition in type 2 diabetes: a post-hoc analysis of a randomized clinical trial

    Wei, S., Brejnrod, A. D., Trivedi, Urvish, Mortensen, M. S., Johansen, M. Y., Karstoft, Kristian, Vaag, A. A., Ried-Larsen, M. & Sørensen, Søren Johannes, 2022, In: Gut Microbes. 14, 1, 15 p., 2005407.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Characterization of host associated microbiota under influencing factors: A case study on human gut and Brachypodium root

    Wei, S., 2019, Department of Biology, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  4. Published

    Pathogens and host immunity in the ancient human oral cavity

    Warinner, C., Rodrigues, J. F. M., Vyas, R., Trachsel, C., Shved, N., Grossmann, J., Radini, A., Hancock, Y., Tito, R. Y., Fiddyment, S., Speller, C., Hendy, J., Charlton, S., Luder, H. U., Salazar-García, D. C., Eppler, E., Seiler, R., Hansen, L. H., Samaniego Castruita, J. A., Barkow-Oesterreicher, S. & 12 others, Teoh, K. Y., Kelstrup, C., Olsen, Jesper Velgaard, Nanni, P., Kawai, T., Willerslev, Eske, von Mering, C., Lewis, C. M., Collins, M. J., Gilbert, M Thomas P, Rühli, F. & Cappellini, Enrico, 2014, In: Nature Genetics. 46, p. 336-344 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Cooperative antibiotic resistance facilitates horizontal gene transfer

    Wang, Q., Wei, S., Silva, A. F. & Madsen, Jonas Stenløkke, 2023, In: ISME Journal. 17, 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    The maintenance and spread of cooperative antibiotic resistance

    Wang, Q., 2022, Department of Biology, Faculty of Science, University of Copenhagen. 280 p.

    Research output: Book/Report › Ph.D. thesis › Research

  7. Published

    An easily modifiable conjugative plasmid for studying horizontal gene transfer

    Wang, Q., Olesen, Asmus Kalckar, Maccario, Lorrie & Madsen, Jonas Stenløkke, 2022, In: Plasmid. 123-124, 10 p., 102649.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    The mycorrhizal fungus (Glomus intraradices) affects microbial activity in the rhizosphere of pea plants (Pisum sativum)

    Wamberg, C., Christensen, Søren, Jakobsen, I., Müller, A. K. & Sørensen, Søren Johannes, 2003, In: Soil Biology & Biochemistry. Vol. 35, issue 10, p. 1349-1357

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Electron microscopical observations on some species of Paraphysomonas (Chrysophyceae) from Danish lakes and ponds

    Vørs, N., Johansen, B. B. & Havskum, H., 1991, In: Nova Hedwigia: Zeitschrift für Kryptogamenkunde. 50, 3-4, p. 337-354

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Fast response of fungal and prokaryotic communities to climate change manipulation in two contrasting tundra soils

    Voříšková, J., Elberling, Bo & Priemé, Anders, 2019, In: Environmental Microbiomes. 14, 1, 15 p., 6.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Sequence and comparative analysis of Lactococcus lactis c2 dairy bacteriphages with different thermal inactivation

    Vogensen, Finn Kvist, Nielsen, C. L. M., Bashir, A., Kot, Witold, Hansen, Lars Hestbjerg, Neve, H., Heller, K. J., Sørensen, Søren Johannes & Knoechel, Susanne, Aug 2011.

    Research output: Contribution to conference › Poster › Research

  12. Published

    Statistical analysis of post mortem DNA damage-derived miscoding lesions in Neandertal mitochondrial DNA

    Vives, S., Gilbert, M Thomas P, Arenas, C., Gigli, E., Lao, O. & Lalueza-Fox, C., 2008, In: BMC Research Notes. 1, p. 40

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Structure of the acidianus filamentous virus 3 and comparative genomics of related archaeal lipothrixviruses

    Vestergaard, G. A., Aramayo, R., Basta, T., Häring, M., Peng, Xu, Brügger, K., Chen, L., Rachel, R., Boisset, N., Garrett, Roger Antony & Prangishvili, D., 2008, In: Journal of Virology. 82, 1, p. 371-381 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    CRISPR adaptive immune systems of Archaea

    Vestergaard, G. A., Garrett, Roger Antony & Shah, S. A., 2014, In: R N A Biology. 11, 2, p. 157-168 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    A novel rudivirus, ARV1, of the hyperthermophilic archaeal genus Acidianus

    Vestergaard, G. A., Häring, M., Peng, Xu, Rachel, R., Garrett, Roger Antony & Prangishvili, D., 2005, In: Virology. 336, 1, p. 83-92 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Stygiolobus rod-shaped virus and the interplay of crenarchaeal rudiviruses with the CRISPR antiviral system

    Vestergaard, G. A., Shah, S. A., Bize, A., Reitberger, W., Reuter, M., Phan, H., Briegel, A., Rachel, R., Garrett, Roger Antony & Prangishvili, D., 2008, In: Journal of Bacteriology. 190, 20, p. 6837-6845 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Colonic lesions, cytokine profiles, and gut microbiota in plasminogen-deficient mice

    Vestergaard, Bill, Krych, Lukasz, Lund, L. R., Jørgensen, B. M. P., Hansen, Lars Hestbjerg, Jensen, Henrik Elvang, Nielsen, Dennis Sandris & Hansen, Axel Kornerup, 2015, In: Comparative Medicine. 65, 5, p. 382-397 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    The evolution of virulence in Pseudomonas aeruginosa during chronic wound infection

    Vanderwoude, J., Fleming, D., Azimi, S., Trivedi, Urvish, Rumbaugh, K. P. & Diggle, S. P., 2020, In: Proceedings of the Royal Society B: Biological Sciences. 287, 1937, 10 p., 20202272.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Antibiotic susceptibility of cystic fibrosis lung microbiome members in a multispecies biofilm

    Vandeplassche, E., Sass, A., Ostyn, L., Burmølle, Mette, Kragh, K. N., Bjarnsholt, Thomas, Coenye, T. & Crabbé, A., 2020, In: Biofilm. 2, 9 p., 100031.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Social dynamics & adaptive strategies of microbes

    Trivedi, Urvish, 2017, Department of Biology, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  21. Published

    Staphylococcus aureus coagulases are exploitable yet stable public goods in clinically relevant conditions

    Trivedi, Urvish, Madsen, Jonas Stenløkke, Everett, J., Fell, C., Russel, J., Haaber, J., Crosby, H. A., Horswill, A. R., Burmølle, Mette, Rumbaugh, K. P. & Sørensen, Søren Johannes, 11 Dec 2018, In: Proceedings of the National Academy of Sciences of the United States of America. 115, 50, p. E11771-E11779

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Persistence and progression of staphylococcal infection in the presence of public goods

    Trivedi, Urvish, Fell, C., Madsen, Jonas Stenløkke, Everett, J., Burmølle, Mette, Rumbaugh, K. P. & Sørensen, Søren Johannes, 2020, In: npj Biofilms and Microbiomes. 6, 5 p., 55.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    A post-planktonic era of in vitro infectious models: issues and changes addressed by a clinically relevant wound like media

    Trivedi, Urvish, Madsen, Jonas Stenløkke, Rumbaugh, K. P., Wolcott, R. D., Burmølle, Mette & Sørensen, Søren Johannes, 2017, In: Critical Reviews in Microbiology. 43, 4, p. 453-465 12 p.

    Research output: Contribution to journal › Review › Research › peer-review

  24. Published

    Effect of the Nursing Mother on the Gut Microbiome of the Offspring During Early Mouse Development

    Treichel, N. S., Prevorsek, Z., Mrak, V., Kostric, M., Vestergaard, G., Foesel, B., Pfeiffer, S., Stres, B., Schöler, A. & Schloter, M., 2019, In: Microbial Ecology. 78, 2, p. 517-527

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Deciphering bacteria associated with a pre-parasitic stage of the root-knot nematode Meloidogyne hapla in nemato-suppressive and nemato-conducive soils

    Topalović, O., Santos, S. S., Heuer, H., Nesme, Joseph, Kanfra, X., Hallmann, J., Sørensen, Søren Johannes & Vestergård, M., 2022, In: Applied Soil Ecology. 172, 9 p., 104344.

    Research output: Contribution to journal › Journal article › Research › peer-review

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