Microbiology

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  1. 2024
  2. Published

    The feather moss Hylocomium splendens affects the transcriptional profile of a symbiotic cyanobacterium in relation to acquisition and turnover of key nutrients

    Alvarenga, Danillo Oliveira, Priemé, Anders & Rousk, Kathrin, 2024, In: Microbial Ecology. 87, 11 p., 49.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Long-term conservation tillage with reduced nitrogen fertilization intensity can improve winter wheat health via positive plant–microorganism feedback in the rhizosphere

    Behr, J. H., Kuhl-Nagel, T., Sommermann, L., Moradtalab, N., Chowdhury, S. P., Schloter, M., Windisch, S., Schellenberg, I., Maccario, Lorrie, Sørensen, Søren Johannes, Rothballer, M., Geistlinger, J., Smalla, K., Ludewig, U., Neumann, G., Grosch, R. & Babin, D., 2024, In: FEMS Microbiology Ecology. 100, 2, 18 p., fiae003.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Crispr-Cas Repurposed: Defense and Counter-defense on Mobile Genetic Elements

    Camara, Sarah, 2024, Department of Biology, Faculty of Science, University of Copenhagen. 186 p.

    Research output: Book/Report › Ph.D. thesis › Research

  5. Published

    A comparison of short-read, HiFi long-read, and hybrid strategies for genome-resolved metagenomics

    Eisenhofer Philipona, Raphael A, Nesme, J., Santos-Bay, Luisa, Koziol, Adam Leslie, Sørensen, Søren Johannes, Alberdi, Antton & Aizpurua Arrieta, Ostaizka, 2024, In: Microbiology Spectrum. 12, 4, 14 p., e03590-23.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. E-pub ahead of print

    Antibiotic implant irrigation and deep infection: A retrospective study of 1508 patients undergoing breast reconstruction with implants

    Hemmingsen, Mathilde Nejrup, Bennedsen, A. K., Kullab, R. B., Weltz, T. K., Ørholt, M., Norlin, C. B., Kalstrup, J., Bredgaard, R., Sørensen, Søren Johannes, Bjarnsholt, Thomas, Hølmich, Lisbet Rosenkrantz, Damsgaard, T. E., Vester-Glowinski, Peter Viktor & Herly, Mikkel, 2024, (E-pub ahead of print) In: Plastic and Reconstructive Surgery. 26 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Optimizing cleaning strategies for biofouling in reverse osmosis membrane systems: A comparative study using a self-formed instrument

    Khani, M., Hansen, Mads Frederik, Rasekh, B., Nosrati, M., Burmølle, Mette, Ghasemipanah, K. & Zamir, S. M., 2024, In: Journal of Industrial and Engineering Chemistry. 132, p. 448-460 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Fertilizer regime and cultivar affect barley growth and rhizobiome composition

    Kindtler, Nikolaj Lunding, Sheikh, Sanea, Richardy, J., Krogh, E., Maccario, Lorrie, Vestergård, M., Rodrigues da Fonseca, Rute Andreia, Ekelund, Flemming & Laursen, Kristian Holst, 2024, In: Applied Soil Ecology. 198, 13 p., 105384.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Cross-feeding während der Ausbreitung auf Oberflächen

    Kovács, Á. T. & Kiesewalter, Heiko T., 2024, In: BioSpektrum. 30, 1, p. 71 1 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Inhibitors of bacterial immune systems: discovery, mechanisms and applications

    Mayo-Muñoz, D., Pinilla Redondo, Rafael, Camara, Sarah, Birkholz, N. & Fineran, P. C., 2024, In: Nature Reviews Genetics. 25, 4, p. 237-254 18 p.

    Research output: Contribution to journal › Review › Research › peer-review

  11. Published

    Flagellar interference with plasmid uptake in biofilms: a joint experimental and modeling study

    Røder, Henriette Lyng, Christidi, E., Amador Hierro, Cristina Isabel, Music, S., Olesen, Asmus Kalckar, Svensson, B., Madsen, Jonas Stenløkke, Herschend, J., Kreft, J. & Burmølle, Mette, 2024, In: Applied and Environmental Microbiology. 90, 1, 15 p., e01510-23.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Interspecies interactions in dairy biofilms drive community structure and response against cleaning and disinfection

    Sadiq, F. A., De Reu, K., Yang, Nan, Burmølle, Mette & Heyndrickx, M., 2024, In: Biofilm. 7, 13 p., 100195.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Nitrogen and Nod factor signaling determine Lotus japonicus root exudate composition and bacterial assembly

    Tao, Ke, Jensen, I. T., Zhang, S., Villa-Rodríguez, E., Blahovska, Z., Salomonsen, C. L., Martyn, A., Björgvinsdóttir, Þ. N., Kelly, S., Janss, L., Glasius, M., Waagepetersen, R. & Radutoiu, S., 2024, In: Nature Communications. 15, 1, 15 p., 3436.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    The use of biomimetic surfaces to reduce single- and dual-species biofilms of Escherichia coli and Pseudomonas putida

    Teixeira-Santos, R., Azevedo, A., Romeu, M. J., Amador Hierro, Cristina Isabel, Gomes, L. C., Whitehead, K. A., Sjollema, J., Burmølle, Mette & Mergulhão, F. J., 2024, In: Biofilm. 7, 13 p., 100185.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Using Nanopore Sequencing Deciphering Antibiotic Resistance Dissemination In The Wastewater Systems

    Wu, Bruce, 2024, Department of Biology, Faculty of Science, University of Copenhagen. 185 p.

    Research output: Book/Report › Ph.D. thesis › Research

  16. Published

    Interspecific interactions facilitate keystone species in a multispecies biofilm that promotes plant growth

    Yang, Nan, Røder, Henriette Lyng, Wicaksono, W. A., Wassermann, B., Russel, J., Li, Xuan Ji, Nesme, Joseph, Berg, G., Sørensen, Søren Johannes & Burmølle, Mette, 2024, In: The ISME Journal. 18, 1, 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Interphylum dissemination of NDM-5-positive plasmids in hospital wastewater from Fuzhou, China: a single-centre, culture-independent, plasmid transmission study

    Yang, Q. E., Ma, X., Zeng, L., Wang, Q., Li, M., Teng, L., He, M., Liu, C., Zhao, M., Wang, M., Hui, D., Madsen, Jonas Stenløkke, Liao, H., Walsh, T. R. & Zhou, S., 2024, In: The Lancet Microbe. 5, 1, p. e13-e23 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Horizontal transmission of a multidrug-resistant IncN plasmid isolated from urban wastewater

    Yu, Z., Wang, Q., Pinilla Redondo, Rafael, Madsen, Jonas Stenløkke, Clasen, K. A. D., Ananbeh, H., Olesen, Asmus Kalckar, Gong, Zhuang, Yang, Nan, Dechesne, A., Smets, B., Nesme, Joseph & Sørensen, Søren Johannes, 2024, In: Ecotoxicology and Environmental Safety. 271, 12 p., 115971.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Insights into the circular: The cryptic plasmidome and its derived antibiotic resistome in the urban water systems

    Yu, Z., He, Wanli, Klincke, F., Madsen, Jonas Stenløkke, Kot, Witold, Hansen, Lars Hestbjerg, Quintela-Baluja, M., Balboa, S., Dechesne, A., Smets, B., Nesme, Joseph & Sørensen, Søren Johannes, 2024, In: Environment International. 183, 12 p., 108351.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. 2023
  21. Published

    Risk factors for and pregnancy outcomes after SARS-CoV-2 in pregnancy according to disease severity: A nationwide cohort study with validation of the SARS-CoV-2 diagnosis

    Aabakke, A. J. M., Petersen, T. G., Wøjdemann, K., Ibsen, M. H., Jonsdottir, F., Rønneberg, E., Andersen, C. S., Hammer, A., Clausen, T. D., Milbak, J., Burmester, L., Zethner, R., Lindved, B., Thorsen-Meyer, A., Khalil, M. R., Henriksen, B., Jønsson, L., Andersen, L. L. T., Karlsen, K. K., Pedersen, M. L. & 19 others, Hedermann, G., Vestgaard, M., Thisted, D., Fallesen, A. N., Johansson, J. N., Møller, D. C., Dubietyte, G., Andersson, C. B., Farlie, R., Skaarup Knudsen, A., Hansen, L., Hvidman, L., Sørensen, A. N., Rathcke, S. L., Rubin, K. H., Petersen, L. K., Jørgensen, J. S., Krebs, Lone & Bliddal, M., 2023, In: Acta Obstetricia et Gynecologica Scandinavica. 102, 3, p. 282–293 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Oropharyngeal Microbiota Clusters in Children with Asthma or Wheeze Associate with Allergy, Blood Transcriptomic Immune Pathways, and Exacerbation Risk

    U-BIOPRED Study Group, U. S. G., 2023, In: American Journal of Respiratory and Critical Care Medicine. 208, 2, p. 142-154 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Unravelling animal–microbiota evolution on a chip

    Aizpurua Arrieta, Ostaizka, Blijleven, Kees, Trivedi, Urvish, Gilbert, M Thomas P & Alberdi, Antton, 2023, In: Trends in Microbiology. 31, 10, p. 995-1002 8 p.

    Research output: Contribution to journal › Review › Research › peer-review

  24. Published

    Spatial-temporal variations of nitrous oxide emissions in coffee agroforestry systems in Costa Rica

    Bentzon-Tarp, A., Helgadóttir, D., Van den Meersche, K., Gay, F., Priemé, Anders, Roupsard, O., Mages, C. & Elberling, Bo, 2023, In: Agriculture, Ecosystems and Environment. 343, 11 p., 108257.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Bacteriophages suppress CRISPR–Cas immunity using RNA-based anti-CRISPRs

    Camara, Sarah, Mayo-Muñoz, D., Russel, J., Fagerlund, R. D., Madsen, Jonas Stenløkke, Fineran, P. C., Sørensen, Søren Johannes & Pinilla Redondo, Rafael, 2023, In: Nature. 623, 7987, p. 601-607 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    Warmer winters result in reshaping of the European beech forest soil microbiome (bacteria, archaea and fungi) - With potential implications for ecosystem functioning

    Dahl, M. B., Kreyling, J., Petters, S., Wang, H., Mortensen, M. S., Maccario, Lorrie, Sørensen, Søren Johannes, Urich, T. & Weigel, R., 2023, In: Environmental Microbiology. 25, 6, 18 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    Long-term immersion of compostable plastics in marine aquarium: Microbial biofilm evolution and polymer degradation

    Delacuvellerie, A., Brusselman, A., Cyriaque, V., Benali, S., Moins, S., Raquez, J. M., Gobert, S. & Wattiez, R., 2023, In: Marine Pollution Bulletin. 189, 10 p., 114711.

    Research output: Contribution to journal › Journal article › Research › peer-review

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