- Published
Bacteria in Mercury Contaminated Soil and Horizontal gene Transfer
Øregaard, G., 2008, Department of Biology.Research output: Book/Report › Ph.D. thesis › Research
- Published
The evolution, phylogeny, and diversity of the monocotyledons - A Danish research project.
Ågesen, L., Asmussen, C., Frederiksen, S. E., Pedersen, L. B., Rasmussen, Finn N., Johansen, B. B. & Seberg, Ole, 1998. 1 p.Research output: Contribution to conference › Conference abstract for conference › Research
- Published
Synbiotic Lactobacillus acidophilus NCFM and cellobiose does not affect human gut bacterial diversity but increases abundance of lactobacilli, bifidobacteria and branched-chain fatty acids: a randomized, double-blinded cross-over trial
van Zanten, G. C., Krych, Lukasz, Röytiö, H., Forssten, S., Lahtinen, S. J., Abu Al-Soud, W., Sørensen, Søren Johannes, Svensson, B., Jespersen, Lene & Jakobsen, M., 2014, In: F E M S Microbiology Ecology. 90, 1, p. 225-236 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The ability of soil bacteria to receive the conjugative IncP1 plasmid, pKJK10, is different in a mixed community compared to single strains
de la Cruz Perera, C. I., Ren, D., Blanchet, M., Dendooven, L., Marsch, R., Sørensen, Søren Johannes & Burmølle, Mette, 2013, In: F E M S Microbiology Letters. 338, 1, p. 95-100 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Acclimation of subsurface microbial communities to mercury
de Lipthay, J. R., Rasmussen, L. D., Øregaard, G., Simonsen, K., Bahl, M. I., Kroer, Niels & Sørensen, Søren Johannes, 2008, In: FEMS Microbiology Ecology. 65, 1, p. 145-55 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Synergistic Interactions in Microbial Biofilms Facilitate the Establishment of Opportunistic Pathogenic Fungi in Household Dishwashers
Zupancic, J., Raghupathi, P. K., Houf, K., Burmølle, Mette, Sørensen, Søren Johannes & Gunde-Cimerman, N., 2018, In: Frontiers in Microbiology. 9, 13 p., 21.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Community structure of the metabolically active rumen bacterial and archaeal communities of dairy cows over the transition period
Zhu, Z., Noel, S. J., Difford, G. F., Abu Al-Soud, W., Brejnrod, A. D., Sørensen, Søren Johannes, Lassen, J., Løvendahl, P. & Højberg, O., 8 Nov 2017, In: PLoS ONE. 12, 11, 24 p., e0187858.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Changes in rumen bacterial and archaeal communities over the transition period in primiparous Holstein dairy cows
Zhu, Z., Kristensen, L., Difford, G. F., Poulsen, M., Noel, S. J., Abu Al-Soud, W., Sørensen, Søren Johannes, Lassen, J., Løvendahl, P. & Højberg, O., 2018, In: Journal of Dairy Science. 101, 11, p. 9847-9862Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Snow microbiome functional analyses reveal novel aspects of microbial metabolism of complex organic compounds
Zhu, C., Miller, M., Lusskin, N., Bergk Pinto, B., Maccario, Lorrie, Häggblom, M., Vogel, T., Larose, C. & Bromberg, Y., 2020, In: MicrobiologyOpen. 9, 9, e1100.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Combining a novel biofilm reactor with a constructed wetland for rural, decentralized wastewater treatment
Zhang, R., Liu, X., Wang, L., Xu, P., Li, K., Chen, X., Meng, R., Pu, Y., Yang, X., Rousseau, D. P. L. & Van Hulle, S. W. H., 2023, In: Chemical Engineering Journal. 455, 11 p., 140906.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Iron oxide coated sand (IOS): Scale-up analysis and full-scale application for phosphorus removal from goat farm wastewater
Zhang, R., Wang, L., Lakho, F. H., Yang, X., Depuydt, V., Igodt, W., Le, H. Q., Rousseau, D. P. L. & Van Hulle, S., 2022, In: Separation and Purification Technology. 284, 10 p., 120213.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
基于 QMEC 分析的青藏高原不同类型冰川前缘地土壤微生物功能潜力
Zhang, J. J., Priemé, Anders, Chen, X. K., Zhou, H. C., Zhang, Q. W., Zhuang, X. L., Qin, X., Zhuang, G. Q. & Ma, A. Z., 2023, In: Huanjing Kexue/Environmental Science. 44, 1, p. 512-519 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Exploring variation in the d(N)/d(S) ratio among sites and lineages using mutational mappings: applications to the influenza virus
Zhai, W., Slatkin, M. & Nielsen, Rasmus, 2007, In: Journal of Molecular Evolution. 65, 3, p. 340-8 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Parasites of the shore crab Carcinus maenas (L.): implications for reproductive potential and invasion success
Zetlmeisl, C., Hermann, J., Petney, T., Glenner, Henrik, Griffiths, C. & Taraschewski, H., 2011, In: Parasitology. 138, 03, p. 394-401 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Prokaryotic Community Composition and Extracellular Polymeric Substances Affect Soil Microaggregation in Carbonate Containing Semiarid Grasslands
Zethof, J. H. T., Bettermann, A., Vogel, C., Babin, D., Cammeraat, E. L. H., Solé-Benet, A., Lázaro, R., Luna, L., Nesme, Joseph, Woche, S. K., Sørensen, Søren Johannes, Smalla, K. & Kalbitz, K., 2020, In: Frontiers in Environmental Science. 8, 19 p., 51.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A short prokaryotic Argonaute activates membrane effector to confer antiviral defense
Zeng, Z., Chen, Y., Pinilla Redondo, Rafael, Shah, S. A., Zhao, F., Wang, C., Hu, Z., Wu, C., Zhang, C., Whitaker, R. J., She, Q. & Han, W., 2022, In: Cell Host and Microbe. 30, 7, p. 930-943.e6 21 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Large cryoconite aggregates on a Svalbard glacier support a diverse microbial community including ammonia-oxidizing archaea
Zarsky, J. D., Stibal, M., Hodson, A., Sattler, B., Schostag, M., Hansen, Lars Hestbjerg, Jacobsen, C. S. & Psenner, R., 2013, In: Environmental Research Letters. 8, 3, 11 p., 035044.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Profiling of the metabolically active community from a production-scale biogas plant by means of high-throughput metatranscriptome sequencing
Zakrzewski, M., Goesmann, A., Jaenicke, S., Jünemann, S., Eikmeyer, F., Szczepanowski, R., Abu Al-Soud, W., Sørensen, Søren Johannes, Pühler, A. & Schlüter, A., 2012, In: Journal of Biotechnology. 158, 4, p. 248-258 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Changes induced by heavy metals in the plant-associated microbiome of Miscanthus x giganteus
Zadel, U., Nesme, Joseph, Michalke, B., Vestergaard, G., Płaza, G. A., Schröder, P., Radl, V. & Schloter, M., 2020, In: Science of the Total Environment. 711, 10 p., 134433.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Exudates from Miscanthus x giganteus change the response of a root-associated Pseudomonas putida strain towards heavy metals
Zadel, U., Cruzeiro, C., Raj Durai, A. C., Nesme, Joseph, May, R., Balázs, H., Michalke, B., Płaza, G., Schröder, P., Schloter, M. & Radl, V., 2022, In: Environmental Pollution. 313, 13 p., 119989.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Insights into Bacterial Milk Spoilage with Particular Emphasis on the Roles of Heat-Stable Enzymes, Biofilms, and Quorum Sensing
Yuan, L., Sadiq, F. A., Burmølle, Mette, Liu, T. & He, G., 2018, In: Journal of Food Protection. 81, 10, p. 1651-1660Research output: Contribution to journal › Review › Research › peer-review
- Published
Mixed-species biofilms in the food industry: current knowledge and novel control strategies
Yuan, L., Hansen, Mads Frederik, Røder, Henriette Lyng, Wang, N., Burmølle, Mette & He, G., 2020, In: Critical Reviews in Food Science and Nutrition. 60, 13, p. 2277-2293Research output: Contribution to journal › Review › Research › peer-review
- Published
Insights into psychrotrophic bacteria in raw milk: A review
Yuan, L., Sadiq, F. A., Burmølle, Mette, Wang, N. & He, G., 2019, In: Journal of Food Protection. 82, 7, p. 1148-1159 12 p.Research output: Contribution to journal › Review › Research › peer-review
- Published
Interspecies variation in biofilm-forming capacity of psychrotrophic bacterial isolates from Chinese raw milk
Yuan, L., Burmølle, Mette, Sadiq, F. A., Wang, N. & He, G., 2018, In: Food Control. 91, p. 47-57 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The Wastewater Plasmidome and its Derived Resistome: Insight Into Their Dynamics in the Urban Water Systems
Yu, Z., 2022, Department of Biology, Faculty of Science, University of Copenhagen. 196 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
Horizontal transmission of a multidrug-resistant IncN plasmid isolated from urban wastewater
Yu, Z., Wang, Q., Pinilla Redondo, Rafael, Madsen, Jonas Stenløkke, Clasen, K. A. D., Ananbeh, H., Olesen, Asmus Kalckar, Gong, Zhuang, Yang, Nan, Dechesne, A., Smets, B., Nesme, Joseph & Sørensen, Søren Johannes, 2024, In: Ecotoxicology and Environmental Safety. 271, 12 p., 115971.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Insights into the circular: The cryptic plasmidome and its derived antibiotic resistome in the urban water systems
Yu, Z., He, Wanli, Klincke, F., Madsen, Jonas Stenløkke, Kot, Witold, Hansen, Lars Hestbjerg, Quintela-Baluja, M., Balboa, S., Dechesne, A., Smets, B., Nesme, Joseph & Sørensen, Søren Johannes, 2024, In: Environment International. 183, 12 p., 108351.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Nitrous oxide production and consumption potential in an agricultural and a forest soil
Yu, K., Struwe, Sten, Kjøller, A. & Guanxiong, C., 2008, In: Communications in Soil Science and Plant Analysis. 39, 15 & 16, p. 2205-2220 16 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Denitrification rate determined by nitrate disapperance is higher than determined by nitrous oxide production with acetylene blockage
Yu, K., Struwe, Sten, Kjøller, A. & Chen, G., 2008, In: Ecological Engineering: The Journal of Ecotechnology. 32, 1, p. 90-96 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Dependence among sites in RNA evolution.
Yu, J. & Thorne, J. L., 2006, In: Molecular Biology and Evolution. 23, 8, p. 1525-37 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Testing for spatial clustering of amino acid replacements within protein tertiary structure.
Yu, J. & Thorne, J. L., 2006, In: Journal of Molecular Evolution. 62, 6, p. 682-92 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Dependence of paracentric inversion rate on tract length
York, T. L., Durrett, R. & Nielsen, Rasmus, 2007, In: BMC Bioinformatics. 8, p. 115Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Effects of soil pre-treatment with Basamid© granules, Brassica juncea, Raphanus sativus, and Tagetes patula on bacterial and fungal communities at two apple replant disease sites
Yim, B., Nitt, H., Wrede, A., Jacquiod, S. J. A., Sørensen, Søren Johannes, Winkelmann, T. & Smalla, K., 1 Sep 2017, In: Frontiers in Microbiology. 8, 15 p., 1604.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Soil texture is a stronger driver of the maize rhizosphere microbiome and extracellular enzyme activities than soil depth or the presence of root hairs
Yim, B., Ibrahim, Z., Rüger, L., Ganther, M., Maccario, Lorrie, Sørensen, Søren Johannes, Heintz-Buschart, A., Tarkka, M. T., Vetterlein, D., Bonkowski, M., Blagodatskaya, E. & Smalla, K., 2022, In: Plant and Soil. 478, 1-2, p. 229-251 23 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Rhizosphere microbial communities associated to rose replant disease: links to plant growth and root metabolites
Yim, B., Baumann, A., Grunewaldt-Stöcker, G., Liu, B., Beerhues, L., Zühlke, S., Sapp, M., Nesme, Joseph, Sørensen, Søren Johannes, Smalla, K. & Winkelmann, T., 2020, In: Horticulture Research. 7, 16 p., 144.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Mutation-selection models of codon substitution and their use to estimate selective strengths on codon usage
Yang, Z. & Nielsen, Rasmus, 2008, In: Molecular Biology and Evolution. 25, 3, p. 568-79 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Interphylum dissemination of NDM-5-positive plasmids in hospital wastewater from Fuzhou, China: a single-centre, culture-independent, plasmid transmission study
Yang, Q. E., Ma, X., Zeng, L., Wang, Q., Li, M., Teng, L., He, M., Liu, C., Zhao, M., Wang, M., Hui, D., Madsen, Jonas Stenløkke, Liao, H., Walsh, T. R. & Zhou, S., 2024, In: The Lancet Microbe. 5, 1, p. e13-e23 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Emergent bacterial community properties induce enhanced drought tolerance in Arabidopsis
Yang, Nan, Nesme, Joseph, Røder, Henriette Lyng, Li, Xuan Ji, Zuo, Zhangli Thomsen, Petersen, Morten, Burmølle, Mette & Sørensen, Søren Johannes, 2021, In: npj Biofilms and Microbiomes. 7, 11 p., 82.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Microbe-plant Interactions: Impact of bacterial interactions and multispecies biofilms on plant growth and drought tolerance
Yang, Nan, 2023, Department of Biology, Faculty of Science, University of Copenhagen. 115 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
Interspecific interactions facilitate keystone species in a multispecies biofilm that promotes plant growth
Yang, Nan, Røder, Henriette Lyng, Wicaksono, W. A., Wassermann, B., Russel, J., Li, Xuan Ji, Nesme, Joseph, Berg, G., Sørensen, Søren Johannes & Burmølle, Mette, 2024, In: The ISME Journal. 18, 1, 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genome-wide detection of selection and other evolutionary forces
Xu, Z. & Zhou, R., 2015, Bacterial pangenomics: methods and protocols. Mengoni, A., Galardini, M. & Fondi, M. (eds.). Springer, p. 271-287 17 p. (Methods in Molecular Biology).Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
Bioinformatic approaches reveal metagenomic characterization of soil microbial community
Xu, Z., Hansen, M. A., Hansen, Lars Hestbjerg, Jacquiod, S. J. A. & Sørensen, Søren Johannes, 2014, In: P L o S One. 9, 4, 11 p., e93445.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Culture-dependent and -independent investigations of microbial diversity on urinary catheters
Xu, Y., Moser, Claus Ernst, Abu Al-Soud, W., Sørensen, Søren Johannes, Høiby, Niels, Nielsen, P. H. & Thomsen, T. R., 2012, In: Journal of Clinical Microbiology. 50, 12, p. 3901-3908 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Deepened snow enhances gross nitrogen cycling among Pan-Arctic tundra soils during both winter and summer
Xu, W., Priemé, Anders, Cooper, E. J., Mörsdorf, M. A., Semenchuk, P., Elberling, Bo, Grogan, P. & Ambus, Per Lennart, 1 Sep 2021, In: Soil Biology and Biochemistry. 160, 13 p., 108356.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The needle mycobiome of Picea glauca – A dynamic system reflecting surrounding environment and tree phenological traits
Würth, D. G., Dahl, M. B., Trouillier, M., Wilmking, M., Unterseher, M., Scholler, M., Sørensen, Søren Johannes, Mortensen, M. & Schnittler, M., 2019, In: Fungal Ecology. 41, p. 177-186 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
When less is more: shortening the Lpp protein leads to increased vancomycin resistance in Escherichia coli
Wykes, H., Le, Van Hung Vuong, Olivera, Catrina Diane Peralta & Rakonjac, J., 2023, In: Journal of Antibiotics. 76, p. 746-750 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Historical mammal extinction on Christmas Island (Indian Ocean) correlates with introduced infectious disease
Wyatt, K. B., Campos, P. F., Gilbert, M Thomas P, Kolokotronis, S., Hynes, W. H., DeSalle, R., Daszak, P., MacPhee, R. D. E. & Greenwood, A. D., 2008, In: PLoS ONE. 3, 11, p. e3602Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Nanopore-based long-read metagenomics uncover the resistome intrusion by antibiotic resistant bacteria from treated wastewater in receiving water body
Wu, Bruce, Che, Y., Dang, C., Zhang, M., Zhang, X., Sun, Y., Li, X., Zhang, T. & Xia, Y., 2022, In: Water Research. 226, 10 p., 119282.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Cooperative microbial interactions drive spatial segregation in porous environments
Wu, Y., Fu, C., Peacock, C. L., Sørensen, Søren Johannes, Redmile-Gordon, M. A., Xiao, K. Q., Gao, C., Liu, J., Huang, Q., Li, Z., Song, P., Zhu, Y., Zhou, J. & Cai, P., 2023, In: Nature Communications. 14, 1, 14 p., 4226.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Using Nanopore Sequencing Deciphering Antibiotic Resistance Dissemination In The Wastewater Systems
Wu, Bruce, 2024, Department of Biology, Faculty of Science, University of Copenhagen. 185 p.Research output: Book/Report › Ph.D. thesis › Research
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Gut microbiota in human adults with type 2 diabetes differs from non-diabetic adults
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Sequence and comparative analysis of Leuconostoc dairy bacteriophages
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Extreme emission of n2o from tropical wetland soil (pantanal, South America)
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Optimizing cleaning strategies for biofouling in reverse osmosis membrane systems: A comparative study using a self-formed instrument
Research output: Contribution to journal › Journal article › Research › peer-review
Interphylum dissemination of NDM-5-positive plasmids in hospital wastewater from Fuzhou, China: a single-centre, culture-independent, plasmid transmission study
Research output: Contribution to journal › Journal article › Research › peer-review
Using Nanopore Sequencing Deciphering Antibiotic Resistance Dissemination In The Wastewater Systems
Research output: Book/Report › Ph.D. thesis › Research