Microbiology

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  1. Published

    454 pyrosequencing analyses of bacterial and archaeal richness in 21 full-scale biogas digesters

    Sundberg, C., Abu Al-Soud, W., Larsson, M., Alm, E., Yekta, S. S., Svensson, B. H., Sørensen, Søren Johannes & Karlsson, A., 2013, In: FEMS Microbiology Ecology. 85, 3, p. 612-626 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  2. Published

    454-sequencing reveals stochastic local reassembly and high disturbance tolerance within arbuscular mycorrhizal fungal communities

    Lekberg, K. Y. M., Schnoor, T., Kjøller, Rasmus, Gibbons, S. M., Hansen, Lars Hestbjerg, Abu Al-Soud, W., Sørensen, Søren Johannes & Rosendahl, Søren, 2012, In: Journal of Ecology. 100, 1, p. 151-160 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    5'-tailed sequencing primers improve sequencing quality of PCR products.

    Binladen, J., Gilbert, M Thomas P, Campos, P. F. & Willerslev, Eske, 2007, In: BioTechniques. 42, 2, p. 174-176

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    800,000 year old mammoth DNA, modern elephant DNA or PCR artefact?

    Binladen, J., Gilbert, M Thomas P & Willerslev, Eske, 2007, In: Biology Letters. 3, 1, p. 55-6; discussion 60-3

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Extrachromosomal replicons:

    Sørensen, Søren Johannes, 2011, Lewin's GENES X. Lewin, B., Krebs, J. E., Goldstein, E. S., Kilpatrick, S. T. & Goldstein, E. S. (eds.). 10th ed ed. Sudbury, Mass. : Jones and Bartlett Publishers, p. 282-298 16 p. (Jones and Bartlett books in computer science).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Education

  6. Published

    Alkalilactibacillus ikkensis, gen. nov., sp. nov., a novel enzyme-producing bacterium from a cold and alkaline environment in Greenland

    Schmidt, M., Priemé, Anders, Johansen, A. & Stougaard, P., 2012, In: Extremophiles. 16, 2, p. 297-305 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Arsukibacterium ikkense gen. nov., sp. nov, a novel alkaliphilic, enzyme-producing ¿-proteobacterium isolated from a cold and alkaline environment in Greenland

    Schmidt, M., Priemé, Anders & Stougaard, P., 2007, In: Systematic and Applied Microbiology. 30, 3, p. 197-201 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Biomimetic studies of wood decay: Simulating the effect of low molecular weight compounds and fungal enzymes

    Hastrup, A. C. S., Howell, C. & Jellison, J., 2007. 16 p.

    Research output: Contribution to conference › Poster › Research

  9. Published

    In Vivo Detection and Quantification of Tetracycline by Use of a Whole-Cell Biosensor in the Rat Intestine

    Bahl, M. I., Hansen, Lars Hestbjerg, Licht, T. R. & Sørensen, Søren Johannes, 2004, In: Antimicrobial Agents and Chemotherapy. 48, 4, p. 1112-1117

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Liparis - Synonomy, phylogenetics, taxonomic notes

    Cribb, P. & Rasmussen, Finn N., 2005, Genera Orchidacearum vol. 4 (Part one). Pridgeon, A. M., Cribb, P. J., Chase, M. W. & Rasmussen, F. N. (eds.). Oxford: Oxford University Press, Vol. 4. p. 465-471 8 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research

  11. Published

    Rhodonellum psychrophilum gen. nov., sp. nov., a novel psychrophilic and alkaliphilic bacterium of the phylum Bacteroidetes isolated from Greenland

    Schmidt, M., Priemé, Anders & Stougaard, P., 2006, In: International Journal of Systematic and Evolutionary Microbiology. 56, p. 2887-2892 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Serpula lacrymans, The Dry Rot Fungus and Tolerance Towards Copper-Based Wood Preservatives

    Hastrup, A. C. S., Jensen, B., Clausen, C. & Green III, F., 2005, Ikke angivet: 36th Annual Meeting. U. S. Forest Service. Tree Search; Washington, D.C., Vol. IRG/WP 05. p. 1-7

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research

  13. Published

    Stichorkis - Synonomy, taxonomic notes

    Cribb, P. & Rasmussen, Finn N., 2005, Genera Orchidacearum vol. 4 (Part one). Pridgeon, A. M., Cribb, P. J., Chase, M. W. & Rasmussen, F. N. (eds.). Oxford: Oxford University Press, Vol. 4. p. 483–487 4 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research

  14. Published

    Warmingia margaritaceae sp. nov. from Costa Rica and a review of the genus

    Johansen, B. B., 1992, In: Lindleyana. 7, 4, p. 194-198

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Acromyrmex leaf-cutting ants have simple gut microbiota with nitrogen-fixing potential

    Sapountzis, P., Zhukova, M., Hansen, Lars Hestbjerg, Sørensen, Søren Johannes, Schiøtt, M. & Boomsma, Jacobus J., 2015, In: Applied and Environmental Microbiology. 81, 16, p. 5527-5537 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Hordeum vulgare differentiates its response to beneficial bacteria

    Duan, Y., Han, M., Grimm, M., Schierstaedt, J., Imani, J., Cardinale, M., Le Jean, M., Nesme, Joseph, Sørensen, Søren Johannes & Schikora, A., 2023, In: BMC Plant Biology. 23, 1, 16 p., 460.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    In Vitro Community Synergy between Bacterial Soil Isolates Can Be Facilitated by pH Stabilization of the Environment

    Herschend, J., Koren, K., Røder, Henriette Lyng, Brejnrod, A., Kühl, Michael & Burmølle, Mette, 2018, In: Applied and Environmental Microbiology. 84, 21, e01450.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    In situ metabolomic- and transcriptomic-profiling of the host-associated cyanobacteria Prochloron and Acaryochloris marina

    Behrendt, L., Raina, J., Lutz, A., Kot, W., Albertsen, M., Nielsen, P. H., Sørensen, Søren Johannes, Larkum, A. W. D. & Kühl, Michael, 2018, In: I S M E Journal. 12, p. 556–567 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    In vitro community synergy between bacterial soil isolates can be facilitated by pH stabilisation of the environment.

    Herschend, J., Koren, K., Røder, Henriette Lyng, Brejnrod, A. D., Kühl, Michael & Burmølle, Mette, 2018, In: Applied and Environmental Microbiology. 84, 21, p. 1-15 e01450-18.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Papio spp. Colon microbiome and its link to obesity in pregnancy

    Li, Xuan Ji, Rensing, C., Taylor, W. L., Costelle, C., Brejnrod, A. D., Ferry, R. J. ,. J., Higgins, P. B., Folli, F., Kottapalli, K. R., Hubbard, G. B., Dick, E. J. ,. J., Yooseph, S., Nelson, K. E. & Schlabritz-Loutsevitch, N., Dec 2018, In: Journal of Medical Primatology. 47, 6, p. 393-401

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Pseudomonas aeruginosa tolerance to tobramycin, hydrogen peroxide and polymorphonuclear leukocytes is quorum-sensing dependent

    Bjarnsholt, Thomas, Jensen, Peter Østrup, Burmølle, Mette, Hentzer, M., Haagensen, J. A. J., Hougen, H. P., Calum, H., Madsen, K. G., Moser, Claus Ernst, Molin, S., Høiby, Niels & Givskov, Michael, Feb 2005, In: Microbiology. 151, Pt 2, p. 373-83 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Salmonella persistence in soil depends on reciprocal interactions with indigenous microorganisms

    Schierstaedt, J., Jechalke, S., Nesme, Joseph, Neuhaus, K., Sørensen, Søren Johannes, Grosch, R., Smalla, K. & Schikora, A., 2020, In: Environmental Microbiology. 22, 7, p. 2639-2652 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Staphylococcus aureus coagulases are exploitable yet stable public goods in clinically relevant conditions

    Trivedi, Urvish, Madsen, Jonas Stenløkke, Everett, J., Fell, C., Russel, J., Haaber, J., Crosby, H. A., Horswill, A. R., Burmølle, Mette, Rumbaugh, K. P. & Sørensen, Søren Johannes, 11 Dec 2018, In: Proceedings of the National Academy of Sciences of the United States of America. 115, 50, p. E11771-E11779

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Age- and tactic-related paternity success in male African elephants

    Rasmussen, H. B., Okello, J. B. A., Wittemyer, G., Siegismund, Hans Redlef, Arctander, P., Vollrath, F. & Douglas-Hamilton, I., 2008, In: Behavioral Ecology. 19, 1, p. 9-15

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Methanol improves methane uptake in starved methanotrophic microorganisms

    Priemé, Anders, Bakken, L. R. & Jensen, S., 1998, In: Applied and Environmental Microbiology. 64, p. 1143-1146 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    A Bayesian multilocus association method: allowing for higher-order interaction in association studies

    Albrechtsen, Anders, Castella, S., Andersen, G., Hansen, T., Pedersen, O. & Nielsen, Rasmus, 2007, In: Genetics. 176, 2, p. 1197-208 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    A Multivariate Study on Genetic Variation in Teak (Tectona grandis (L.))

    Kjær, Erik Dahl, Siegismund, Hans Redlef & Suangtho, V., 1996, In: Silvae Genetica. 45, 5–6, p. 361-368

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    A combined DNA-microsatellite and isozyme analysis of the population structure of the harbour porpoise in Danish waters and west Greenland

    Andersen, L. W., Holm, L. E., Siegismund, Hans Redlef, Clausen, B., Kinze, C. C. & Loeschcke, V., 1997, In: Heredity. 78, 3, p. 270-276 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    A community resource for paired genomic and metabolomic data mining

    Schorn, M. A., Verhoeven, S., Ridder, L., Huber, F., Acharya, D. D., Aksenov, A. A., Aleti, G., Moghaddam, J. A., Aron, A. T., Aziz, S., Bauermeister, A., Bauman, K. D., Baunach, M., Beemelmanns, C., Beman, J. M., Berlanga-Clavero, M. V., Blacutt, A. A., Bode, H. B., Boullie, A., Brejnrod, A. & 90 others, Bugni, T. S., Calteau, A., Cao, L., Carrión, V. J., Castelo-Branco, R., Chanana, S., Chase, A. B., Chevrette, M. G., Costa-Lotufo, L. V., Crawford, J. M., Currie, C. R., Cuypers, B., Dang, T., de Rond, T., Demko, A. M., Dittmann, E., Du, C., Drozd, C., Dujardin, J., Dutton, R. J., Edlund, A., Fewer, D. P., Garg, N., Gauglitz, J. M., Gentry, E. C., Gerwick, L., Glukhov, E., Gross, H., Gugger, M., Matus, D. G. G., Helfrich, E. J. N., Hempel, B., Hur, J., Iorio, M., Jensen, P. R., Kang, K. B., Kaysser, L., Kelleher, N. L., Kim, C. S., Kim, K. H., Koester, I., König, G. M., Leao, T., Lee, S. R., Lee, Y., Li, Xuan Ji, Little, J. C., Maloney, K. N., Männle, D., Martin H., C., McAvoy, A. C., Metcalf, W. W., Mohimani, H., Molina-Santiago, C., Moore, B. S., Mullowney, M. W., Muskat, M., Nothias, L., O'Neill, E. C., Parkinson, E. I., Petras, D., Piel, J., Pierce, E. C., Pires, K., Reher, R., Romero, D., Roper, M. C., Rust, M., Saad, H., Saenz, C., Sanchez, L. M., Sørensen, Søren Johannes, Sosio, M., Süssmuth, R. D., Sweeney, D., Tahlan, K., Thomson, R. J., Tobias, N. J., Trindade-Silva, A. E., van Wezel, G. P., Wang, M., Weldon, K. C., Zhang, F., Ziemert, N., Duncan, K. R., Crüsemann, M., Rogers, S., Dorrestein, P. C., Medema, M. H. & van der Hooft, J. J. J., 2021, In: Nature Chemical Biology. 17, 4, p. 363-368

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    A comparison of short-read, HiFi long-read, and hybrid strategies for genome-resolved metagenomics

    Eisenhofer Philipona, Raphael A, Nesme, J., Santos-Bay, Luisa, Koziol, Adam Leslie, Sørensen, Søren Johannes, Alberdi, Antton & Aizpurua Arrieta, Ostaizka, 2024, In: Microbiology Spectrum. 12, 4, 14 p., e03590-23.

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    A converging subset of soil bacterial taxa is permissive to the IncP-1 plasmid pKJK5 across a range of soil copper contamination

    Song, J., Klümper, U., Riber, Leise, Dechesne, A., Smets, B. F., Sørensen, Søren Johannes & Brandt, Kristian Koefoed, 2020, In: FEMS Microbiology Ecology. 96, 11, 10 p., fiaa200.

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    A culture-independent method for studying transfer of IncI1 plasmids from wild-type Escherichia coli in complex microbial communities

    Anjum, M., Madsen, Jonas Stenløkke, Espinosa-Gongora, C., Jana, B., Wiese, M., Nielsen, Dennis Sandris, Sørensen, Søren Johannes, Moodley, Arshnee, Bortolaia, V. & Guardabassi, Luca, Sep 2018, In: Journal of Microbiological Methods. 152, p. 18-26 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    A hidden Markov model approach for determining expression from genomic tiling micro arrays

    Terkelsen, K. M., Gardner, P. P., Arctander, P. & Krogh, Anders, 2006, In: BMC Bioinformatics. 7, 239

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    A highly selective quantitative polymerase chain reactionprotocol for Burkholderia and Pseudomonas bacteria tested in soil

    Bergmark, L., Burmølle, Mette, Hansen, Lars Hestbjerg, Abu Al-Soud, W. & Sørensen, Søren Johannes, Aug 2010.

    Research output: Contribution to conference › Poster › Research

  35. Published

    A host of armor: Prokaryotic immune strategies against mobile genetic elements

    Mayo-Muñoz, D., Pinilla Redondo, Rafael, Birkholz, N. & Fineran, P. C., 2023, In: Cell Reports. 42, 7, 14 p., 112672.

    Research output: Contribution to journal › Review › Research › peer-review

  36. Published

    A low-cost, multiplexable, automated flow cytometry procedure for the characterization of microbial stress dynamics in bioreactors

    Brognaux, A., Han, S., Sørensen, Søren Johannes, Lebeau, F., Thonart, P. & Delvigne, F., 2013, In: Microbial Cell Factories. 12, 100, 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    A maternal gluten-free diet reduces inflammation and diabetes incidence in the offspring of NOD mice

    Hansen, Camilla Hartmann Friis, Krych, Lukasz, Buschard, K., Metzdorff, S. B., Nellemann, C. L., Hansen, Lars Hestbjerg, Nielsen, Dennis Sandris, Frøkiær, Hanne, Skov, Søren & Hansen, Axel Kornerup, 2014, In: Diabetes. 63, 8, p. 2821-2832 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    A mechanism for ParB-dependent waves of ParA, a protein related to DNA segregation during cell division in prokaryotes

    Hunding, A., Gerdes, K. & Charbon, G. E., 2003, In: Journal of Molecular Biology. 329, 1, p. 35-43 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    A meta-proteomics approach to study the interspecies interactions affecting microbial biofilm development in a model community

    Herschend, J., Damholt, Z. B. V., Marquard, A. M., Svensson, B., Sørensen, Søren Johannes, Hägglund, Per Mårten & Burmølle, Mette, 28 Nov 2017, In: Scientific Reports. 7, 13 p., 16483.

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    A new baleen whale from the Late Miocene of Denmark and early mysticete hearing

    Steeman, M. E., 2009, In: Palaeontology. 52, 5, p. 1169-1190

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    A novel and affordable bioaugmentation strategy with microbial extracts to accelerate the biodegradation of emerging contaminants in different media

    Aguilar-Romero, I., van Dillewijn, P., Nesme, Joseph, Sørensen, Søren Johannes, Nogales, R., Delgado-Moreno, L. & Romero, E., 2022, In: Science of the Total Environment. 834, 10 p., 155234.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    A novel baiting microcosm approach used to identify the bacterial community associated with Penicillium bilaii hyphae in soil

    Ghodsalavi, B., Svenningsen, N. B., Hao, X., Olsson, S., Nicolaisen, Mette Haubjerg, Al-Soud, W. A., Sørensen, Søren Johannes & Nybroe, O., 27 Oct 2017, In: PLOS ONE. 12, 10, 14 p., e0187116.

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    A novel rudivirus, ARV1, of the hyperthermophilic archaeal genus Acidianus

    Vestergaard, G. A., Häring, M., Peng, Xu, Rachel, R., Garrett, Roger Antony & Prangishvili, D., 2005, In: Virology. 336, 1, p. 83-92 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    A phase II study of a 3-day schedule with topotecan and cisplatin every three weeks in patients with previously in treated small cell lung cancer and extensive disease: Final results.

    Lassen, Ulrik Niels, Sorensen, M., Jensen, P., Langer, Seppo W., Jensen, B., Jeppesen, N., Rytter, C., Mellemgaard, A., Hansen, Oddur & Osterlind, K., 15 Jul 2004, In: Journal of Clinical Oncology. 22, 14, p. 667S-667S 1 p.

    Research output: Contribution to journal › Conference article › Research › peer-review

  45. Published

    A post-planktonic era of in vitro infectious models: issues and changes addressed by a clinically relevant wound like media

    Trivedi, Urvish, Madsen, Jonas Stenløkke, Rumbaugh, K. P., Wolcott, R. D., Burmølle, Mette & Sørensen, Søren Johannes, 2017, In: Critical Reviews in Microbiology. 43, 4, p. 453-465 12 p.

    Research output: Contribution to journal › Review › Research › peer-review

  46. Published

    A preliminary analysis of the DNA and diet of the extinct Beothuk: a systematic approach to ancient human DNA.

    Kuch, M., Gröcke, D. R., Knyf, M. C., Gilbert, M Thomas P, Younghusband, B., Young, T., Marshall, I., Willerslev, Eske, Stoneking, M. & Poinar, H., 2007, In: American Journal of Physical Anthropology. 132, 4, p. 594-604 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    A role for copper in protozoan grazing - two billion years selecting for bacterial copper resistance

    Hao, X., Lüthje, F. L., Rønn, Regin, German, N. A., Li, Xuan Ji, Huang, F., Kisaka, J., Huffman, D., Alwathnani, H. A., Zhu, Y. & Rensing, C., 2016, In: Molecular Microbiology. 102, 4, p. 628-641 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    A safflower oil based high-fat/high-sucrose diet modulates the gut microbiota and liver phospholipid profiles associated with early glucose intolerance in the absence of tissue inflammation

    Danneskiold-Samsøe, Niels Banhos, Andersen, D., Radulescu, I. D., Hansen, Ann Normann, Brejnrod, A. D., Kragh, M., Madsen, T., Nielsen, C., Josefsen, K. E., Fretté, X., Fjære, E., Madsen, L., Hellgren, L. I., Brix, S. & Kristiansen, Karsten, May 2017, In: Molecular Nutrition & Food Research. 61, 5, 11 p., 1600528.

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    A short prokaryotic Argonaute activates membrane effector to confer antiviral defense

    Zeng, Z., Chen, Y., Pinilla Redondo, Rafael, Shah, S. A., Zhao, F., Wang, C., Hu, Z., Wu, C., Zhang, C., Whitaker, R. J., She, Q. & Han, W., 2022, In: Cell Host and Microbe. 30, 7, p. 930-943.e6 21 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    A spatiotemporal view of plasmid loss in biofilms and planktonic cultures: [plus] Erratum

    Madsen, Jonas Stenløkke, Burmølle, Mette & Sørensen, Søren Johannes, 2013, In: Biotechnology and Bioengineering (Print). 110, 12, p. 3071-3074 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  51. Published

    A taxonomic revision of the genus Hystrix (Triticeae, Poaceae)

    Baden, C., Frederiksen, S. E. & Seberg, Ole, 1997, In: Nordic Journal of Botany. 17, 5, p. 449-467 19 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  52. Published

    Acclimation of subsurface microbial communities to mercury

    de Lipthay, J. R., Rasmussen, L. D., Øregaard, G., Simonsen, K., Bahl, M. I., Kroer, Niels & Sørensen, Søren Johannes, 2008, In: FEMS Microbiology Ecology. 65, 1, p. 145-55 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  53. Published

    Activity of novel 4-PIOL analogues at human α1β2γ2S GABAA receptors - Correlation with hydrophobicity

    Mortensen, M., Frølund, Bente, Jorgensen, A. T., Liljefors, T., Krogsgaard-Larsen, Povl & Ebert, B., 13 Sep 2002, In: European Journal of Pharmacology. 451, 2, p. 125-132 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  54. Published

    Adaptation and heterogeneity of Escherichia coli MC1000 growing in complex environments

    Puentes-Téllez, P., Hansen, M. A., Sørensen, Søren Johannes & van Elsas, J., 2013, In: Applied and Environmental Microbiology. 79, 3, p. 1008-1017 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  55. Published

    Adaptation of root growth to increased ambient temperature requires auxin and ethylene coordination in Arabidopsis

    Fei, Q., Wei, S., Zhou, Z., Gao, H. & Li, X., 2017, In: Plant Cell Reports. 36, 9, p. 1507-1518 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  56. Published

    Adaptive genic evolution in the Drosophila genomes

    Shapiro, J. A., Huang, W., Zhang, C., Hubisz, M. J., Lu, J., Turissini, D. A., Fang, S., Wang, H., Hudson, R. R., Nielsen, Rasmus, Chen, Z. & Wu, C., 2007, In: Proceedings of the National Academy of Science of the United States of America. 104, 7, p. 2271-6 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  57. Published

    AgNO3 sterilizes grains of barley (Hordeum vulgare) without inhibiting germination - a necessary tool for plant–microbiome research

    Munkager, V., Vestergård, M., Priemé, Anders, Altenburger, A., de Visser, E., Johansen, Jesper Liengaard & Ekelund, Flemming, 2020, In: Plants. 9, 3, 16 p., 372.

    Research output: Contribution to journal › Journal article › Research › peer-review

  58. Published

    All IncP-1 plasmid subgroups, including the novel e subgroup, are prevalent in the influent of a Danish wastewater treatment plant

    Bahl, M. I., Burmølle, Mette, Meisner, A., Hansen, Lars Hestbjerg & Sørensen, Søren Johannes, 2009, In: Plasmid. 62, 2, p. 134-139 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  59. Published

    All equal, all different?

    Han, S., Lundin, L. & Sørensen, Søren Johannes, 2010.

    Research output: Contribution to conference › Poster › Research

  60. Published

    All together now: experimental multispecies biofilm model systems

    Tan, C. H., Lee, K. W. K., Burmølle, Mette, Kjelleberg, S. & Rice, S. A., Jan 2017, In: Environmental Microbiology. 19, 1, p. 42-53 12 p.

    Research output: Contribution to journal › Review › Research › peer-review

  61. Published

    Allozyme diversity in two Tanzanian and two Nicaraguan landraces of teak (Tectona grandis L.)

    Kjær, Erik Dahl & Siegismund, Hans Redlef, 1996, In: Forest Genetics. 3, p. 45-52

    Research output: Contribution to journal › Journal article › Research › peer-review

  62. Published

    Alterations of the murine gut microbiome in allergic airway disease are independent of surfactant protein D

    Barfod, K. K., Roggenbuck, M., Al-Shuweli, S., Fakih, D., Sørensen, Søren Johannes & Sørensen, G. L., Mar 2017, In: Heliyon. 3, 3, 19 p., e00262.

    Research output: Contribution to journal › Journal article › Research › peer-review

  63. Published

    Ambient UV-B radiation reduces PSII performance and net photosynthesis in high Arctic Salix arctica

    Albert, K. R., Mikkelsen, T. N., Ro-Poulsen, Helge, Arndal, M. F. & Michelsen, Anders, 2011, In: Environmental and Experimental Botany. 73, p. 10-18 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  64. Published

    Amplicon sequencing provides more accurate microbiome information in healthy children compared to culturing

    Gupta, S., Mortensen, M. S., Schjørring, S., Trivedi, Urvish, Vestergaard, G., Stokholm, Jakob, Bisgaard, H., Krogfelt, K. A. & Sørensen, Søren Johannes, 2019, In: Communications Biology. 2, p. 1-7 7 p., 291.

    Research output: Contribution to journal › Journal article › Research › peer-review

  65. Published

    An Unexpected Location of the Arginine Catabolic Mobile Element (ACME) in a USA300-Related MRSA Strain

    Bartels, Mette Damkjær, Hansen, Lars Hestbjerg, Boye, K., Sørensen, Søren Johannes & Westh, Henrik T., 2011, In: P L o S One. 6, 1, 5 p., e16193.

    Research output: Contribution to journal › Journal article › Research › peer-review

  66. Published

    An alternative anionic bio-sustainable anti-fungal agent: investigation of its mode of action on the fungal cell membrane

    Stenbæk, J., Löf, D., Falkman, P., Jensen, B. & Cárdenas, M., 1 Jul 2017, In: Journal of Colloid and Interface Science. 497, p. 242-248 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  67. Published

    An easily modifiable conjugative plasmid for studying horizontal gene transfer

    Wang, Q., Olesen, Asmus Kalckar, Maccario, Lorrie & Madsen, Jonas Stenløkke, 2022, In: Plasmid. 123-124, 10 p., 102649.

    Research output: Contribution to journal › Journal article › Research › peer-review

  68. Published

    An improved method for including upper size range plasmids in metamobilomes

    Norman, A., Riber, Leise, Luo, W., Li, L., Hansen, Lars Hestbjerg & Sørensen, Søren Johannes, 2014, In: PLoS ONE. 9, 8, 12 p., e104405.

    Research output: Contribution to journal › Journal article › Research › peer-review

  69. Published

    An intriguing relationship between the cyclic diguanylate signaling system and horizontal gene transfer

    Madsen, Jonas Stenløkke, Hylling, Ole, Jacquiod, S. J. A., Pécastaings, S., Hansen, L. H., Riber, Leise, Vestergaard, G. A. & Sørensen, Søren Johannes, 2018, In: ISME Journal. 12, 9, p. 2330-2334 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  70. Published

    An invisible workforce: biofilms in the soil

    Burmølle, Mette, Kjøller, Annelise Helene & Sørensen, Søren Johannes, 2012, Microbial biofilms: current research and applications. Lear, G. & Lewis, G. D. (eds.). Caister Academic Press, p. 61-71 11 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  71. Published

    An overview of plasmid transfer in the plant microbiome

    Sanchez Salazar, Angela Maria, Taparia, Tanvi, Olesen, Asmus Kalckar, Acuña, J. J., Sørensen, Søren Johannes & Jorquera, M. A., 2023, In: Plasmid. 127, 11 p., 102695.

    Research output: Contribution to journal › Journal article › Research › peer-review

  72. Published

    Analysis of cell-type-specific gene expression during mouse spermatogenesis

    Almstrup, Kristian, Nielsen, J. E., Hansen, M. A., Tanaka, M., Skakkebæk, Niels Erik & Leffers, H., Jun 2004, In: Biology of Reproduction. 70, 6, p. 1751-1761 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  73. Published

    Analysis of complete mitochondrial genomes from extinct and extant rhinoceroses reveals lack of phylogenetic resolution

    Willerslev, Eske, Gilbert, M Thomas P, Binladen, J., Ho, S. Y. W., Campos, P. F., Ratan, A., Tomsho, L. P., da Fonseca, R. R., Sher, A., Kuznetsova, T. V., Nowak-Kemp, M., Roth, T. L., Miller, W. & Schuster, S. C., 2009, In: BMC Evolutionary Biology. 9, p. 95

    Research output: Contribution to journal › Journal article › Research › peer-review

  74. Published

    Anbragte børn i Danmark: en deskriptiv analyse

    Ejrnæs, Mette, Ejrnæs, N. M. & Frederiksen, S. E., 2008, Institut for Sociologi, Socialt Arbejde og Organisation, Aalborg Universitet, 81 p.

    Research output: Working paper › Research

  75. Published

    Ancient DNA reveals lack of continuity between neolithic hunter-gatherers and contemporary Scandinavians

    Malmström, H., Gilbert, M Thomas P, Thomas, M. G., Brandström, M., Storå, J., Molnar, P., Andersen, P. K., Bendixen, C., Holmlund, G., Götherström, A. & Willerslev, Eske, 2009, In: Current Biology. 19, 20, p. 1758-62 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  76. Published

    Ancient DNA reveals late survival of mammoth and horse in interior Alaska

    Haile, James Seymour, Froese, D. G., Macphee, R. D. E., Roberts, R. G., Arnold, L. J., Reyes, A. V., Rasmussen, M., Nielsen, Rasmus, Brook, B. W., Robinson, S., Demuro, M., Gilbert, M Thomas P, Munch, K., Austin, J. J., Cooper, A., Barnes, I., Möller, P. & Willerslev, Eske, 2009, In: Proceedings of the National Academy of Science of the United States of America. 106, 52, p. 22352-7 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  77. Published

    Ancient DNA- Practical and theoretical issues

    Hebsgaard, M. B., 2008

    Research output: Book/Report › Ph.D. thesis › Research

  78. Published

    Ancient bacteria show evidence of DNA repair.

    Johnson, S. S., Hebsgaard, M. B., Christensen, T. R., Mastepanov, M., Nielsen, Rasmus, Munch, K., Brand, T., Gilbert, M Thomas P, Zuber, M. T., Bunce, M., Rønn, Regin, Gilichinsky, D., Froese, D. & Willerslev, Eske, 2007, In: Proceedings of the National Academy of Science of the United States of America. 104, 36, p. 14401-5 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  79. Published

    Ancient human genome sequence of an extinct Palaeo-Eskimo

    Rasmussen, M., Li, Y., Lindgreen, S., Pedersen, J. S., Albrechtsen, A., Moltke, I., Metspalu, M., Metspalu, E., Kivisild, T., Gupta, R., Bertalan, M., Nielsen, K., Gilbert, T., Wang, Y., Raghavan, M., Campos, P., Kamp, H. L. M., Wilson, A. S., Gledhill, A., Tridico, S. & 32 others, Bunce, M., Lorenzen, Eline, Binladen, J. K. M. A., Guo, X., Zhao, J., Zhang, X., Zhang, H., Li, Z., Chen, M., Orlando, L. A. A., Kristiansen, Karsten, Bak, M., Tommerup, Niels, Bendixen, C., Pierre, T. L., Grønnow, B., Meldgaard, Morten, Andreasen, C., Fedorova, S. A., Osipova, L. P., Higham, T. F. G., Ramsey, C. B., Hansen, Thomas van Overeem, Nielsen, Finn Cilius, Crawford, M. H., Brunak, Søren, Sicheritz-Pontén, T., Villems, R., Nielsen, Rasmus, Krogh, Anders, Wang, J. & Willerslev, Eske, 11 Feb 2010, In: Nature. 463, 7282, p. 757-762 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  80. Published

    Ancient mito-chondria DNA from hair

    Gilbert, M Thomas P, Wilson, A. S., Bunce, M., Hansen, Anders Johannes, Willerslev, Eske, Shapiro, B., Higham, T. F. G., Richards, M. P., O'Connell, T. C., Tobin, D. J., Janaway, R. C. & Cooper, A., 2004, In: Current Biology. 14, 12

    Research output: Contribution to journal › Journal article › Research › peer-review

  81. Published

    Antagonism correlates with metabolic similarity in diverse bacteria

    Russel, J., Røder, Henriette Lyng, Madsen, Jonas Stenløkke, Burmølle, Mette & Sørensen, Søren Johannes, 3 Oct 2017, In: Proceedings of the National Academy of Science of the United States of America. 114, 40, p. 10684-10688 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  82. Published

    Anti-CRISPR protein applications: natural brakes for CRISPR-Cas technologies

    Marino, N. D., Pinilla Redondo, Rafael, Csörgő, B. & Bondy-Denomy, J., 2020, In: Nature Methods. 17, 5, p. 471-479 9 p.

    Research output: Contribution to journal › Review › Research › peer-review

  83. E-pub ahead of print

    Antibiotic implant irrigation and deep infection: A retrospective study of 1508 patients undergoing breast reconstruction with implants

    Hemmingsen, Mathilde Nejrup, Bennedsen, A. K., Kullab, R. B., Weltz, T. K., Ørholt, M., Norlin, C. B., Kalstrup, J., Bredgaard, R., Sørensen, Søren Johannes, Bjarnsholt, Thomas, Hølmich, Lisbet Rosenkrantz, Damsgaard, T. E., Vester-Glowinski, Peter Viktor & Herly, Mikkel, 2024, (E-pub ahead of print) In: Plastic and Reconstructive Surgery. 26 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  84. Published

    Antibiotic susceptibility of cystic fibrosis lung microbiome members in a multispecies biofilm

    Vandeplassche, E., Sass, A., Ostyn, L., Burmølle, Mette, Kragh, K. N., Bjarnsholt, Thomas, Coenye, T. & Crabbé, A., 2020, In: Biofilm. 2, 9 p., 100031.

    Research output: Contribution to journal › Journal article › Research › peer-review

  85. Published

    Antifouling potential of enzymes applied to reverse osmosis membranes

    Khani, M., Hansen, Mads Frederik, Knoechel, Susanne, Rasekh, B., Ghasemipanah, K., Zamir, S. M., Nosrati, M. & Burmølle, Mette, 2023, In: Biofilm. 5, 9 p., 100119.

    Research output: Contribution to journal › Journal article › Research › peer-review

  86. Published

    Antimicrobial Activity of Metals and Metalloids

    Li, Y. P., Fekih, I. B., Fru, E. C., Moraleda-Munoz, A., Li, Xuan Ji, Rosen, B. P., Yoshinaga, M. & Rensing, C., 2021, In: Annual Review of Microbiology. 75, 23 p., 9.

    Research output: Contribution to journal › Journal article › Research › peer-review

  87. Published

    Applicability of GFP microbial whole cell biosensors to bioreactor operations: mathematical modeling and related experimental tools

    Delvigne, F., Brognaux, A., Gorret, N., Sørensen, Søren Johannes, Michel, C. & Thonart, P., Jul 2011, Biosensors - Emerging Materials and Applications. Serra, P. A. (ed.). Rijeka, Croatia: InTech, p. 601-630 30 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  88. Published

    Application of full mitochondrial genome sequencing using 454 GS FLX pyrosequencing

    Mikkelsen, M., Rockenbauer, Eszter, Wächter, A., Fendt, L., Zimmermann, B., Parson, W., Nielsen, S. A., Gilbert, M Thomas P, Willerslev, Eske & Morling, Niels, 2009, Progress in Forensic Genetics 13: Proceedings of the 23rd International ISFG Congress. Morling, N. (ed.). Elsevier, Vol. 2. p. 518 - 519 2 p. (Forensic Science International: Genetics Supplement Series; No. 1, Vol. 2).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  89. Published

    Application of whole-cell biosensors in soil

    Sørensen, Søren Johannes, Hansen, Lars Hestbjerg, Burmølle, Mette, Oregaard, G. & Hermansen, P., 2004, Molecular Microbial Ecology Manual. Kowalchuk, G. A., de Bruijn, F. J., Head, I. M., Akkermans, A. D. L. & van Elsas, J. D. (eds.). 2. ed ed. Kluwer Academic Publishers, p. 1613-1628 8.03

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research

  90. Published

    Application of wood ash leads to strong vertical gradients in soil pH changing prokaryotic community structure in forest top soil

    Bang-Andreasen, T., Peltre, M., Ellegaard-Jensen, L., Hansen, Lars Hestbjerg, Ingerslev, Morten, Rønn, Regin, Jacobsen, C. S. & Kjøller, Rasmus, 2021, In: Scientific Reports. 11, 10 p., 742.

    Research output: Contribution to journal › Journal article › Research › peer-review

  91. Published

    Applications of the GFP reporter genes for ecological studies of fungal biocontrol agents.

    Jensen, Dan Funck, Jensen, B., Mikkelsen, L., Sarrocco, S., Lubeck, M. & Knudsen, I. M. B., 2003, In: Phytopathology.

    Research output: Contribution to journal › Journal article › Research

  92. Published

    Archaeal CRISPR-based immune systems: exchangeable functional modules

    Garrett, Roger Antony, Vestergaard, G. A. & Shah, S. A., 2011, In: Trends in Microbiology. 19, 11, p. 549-56 8 p.

    Research output: Contribution to journal › Review › Research › peer-review

  93. Published

    Arctic Soil Microbial Sensitivity to Seasonal Dynamics and Climate Change

    Priemé, Anders, Blok, D., Haugwitz, M. S., Voriskova, J. & Elberling, Bo, 2017, Microbial Biomass: A Paradigm Shift in Terrestrial Biogeochemistry. Tate, K. R. (ed.). World Scientific, p. 275-307

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  94. Published

    Arctic soil respiration and microbial community structure driven by silicon and calcium

    Stimmler, P., Priemé, Anders, Elberling, Bo, Goeckede, M. & Schaller, J., 2022, In: Science of the Total Environment. 838, 2, 10 p., 156152.

    Research output: Contribution to journal › Journal article › Research › peer-review

  95. Published

    Artificial selection of stable rhizosphere microbiota leads to heritable plant phenotype changes

    Jacquiod, S., Spor, A., Wei, S., Munkager, V., Bru, D., Sørensen, Søren Johannes, Salon, C., Philippot, L. & Blouin, M., 2022, In: Ecology Letters. 25, 1, p. 189-201 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  96. Published

    Assessing the evolutionary impact of amino acid mutations in the human genome

    Boyko, A. R., Williamson, S. H., Indap, A. R., Degenhardt, J. D., Hernandez, R. D., Lohmueller, K. E., Adams, M. D., Schmidt, S., Sninsky, J. J., Sunyaev, S. R., White, T. J., Nielsen, Rasmus, Clark, A. G. & Bustamante, C. D., 2008, In: PLoS Genetics. 4, 5, p. e1000083

    Research output: Contribution to journal › Journal article › Research › peer-review

  97. Published

    Assessing the fidelity of ancient DNA sequences amplified from nuclear genes

    Binladen, J., Wiuf, C. H., Gilbert, M Thomas P, Bunce, M., Barnett, R., Larson, G., Greenwood, A. D., Haile, James Seymour, Ho, S. Y. W., Hansen, Anders Johannes & Willerslev, Eske, 2006, In: Genetics. 172, 2, p. 733-41

    Research output: Contribution to journal › Journal article › Research › peer-review

  98. Published

    Assessment of CH4 and N2O fluxes in a Danish beech (Fagus sylvatica) forest and an adjacent N-fertilised barley (Hordeum vulgare) field: effects of sewage sludge amendments

    Ambus, Per Lennart, Jensen, J. M., Priemé, Anders, Pilegaard, K. & Kjøller, A., 2001, In: Nutrient Cycling in Agroecosystems. 60, 1-3, p. 15-21 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  99. Published

    Assessment of the specificity of Burkholderia and Pseudomonas qPCR assays for detection of these genera in soil using 454 pyrosequencing

    Bergmark, L., Poulsen, P. H. B., Abu Al-Soud, W., Norman, A., Hansen, Lars Hestbjerg & Sørensen, Søren Johannes, 2012, In: F E M S Microbiology Letters. 333, 1, p. 77-84 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  100. Published

    Associational Resistance to Predation by Protists in a Mixed Species Biofilm

    Goh, Y. F., Røder, Henriette Lyng, Chan, S. H., Ismail, M. H., Madsen, Jonas Stenløkke, Lee, K. W. K., Sørensen, Søren Johannes, Givskov, Michael, Burmølle, Mette, Rice, S. A. & McDougald, D., 2023, In: Applied and Environmental Microbiology. 89, 2, 16 p., e0174122.

    Research output: Contribution to journal › Journal article › Research › peer-review

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