Microbiology

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  1. Published

    454 pyrosequencing analyses of bacterial and archaeal richness in 21 full-scale biogas digesters

    Sundberg, C., Abu Al-Soud, W., Larsson, M., Alm, E., Yekta, S. S., Svensson, B. H., Sørensen, Søren Johannes & Karlsson, A., 2013, In: FEMS Microbiology Ecology. 85, 3, p. 612-626 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  2. Published

    454-sequencing reveals stochastic local reassembly and high disturbance tolerance within arbuscular mycorrhizal fungal communities

    Lekberg, K. Y. M., Schnoor, T., Kjøller, Rasmus, Gibbons, S. M., Hansen, Lars Hestbjerg, Abu Al-Soud, W., Sørensen, Søren Johannes & Rosendahl, Søren, 2012, In: Journal of Ecology. 100, 1, p. 151-160 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    5'-tailed sequencing primers improve sequencing quality of PCR products.

    Binladen, J., Gilbert, M Thomas P, Campos, P. F. & Willerslev, Eske, 2007, In: BioTechniques. 42, 2, p. 174-176

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    800,000 year old mammoth DNA, modern elephant DNA or PCR artefact?

    Binladen, J., Gilbert, M Thomas P & Willerslev, Eske, 2007, In: Biology Letters. 3, 1, p. 55-6; discussion 60-3

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Extrachromosomal replicons:

    Sørensen, Søren Johannes, 2011, Lewin's GENES X. Lewin, B., Krebs, J. E., Goldstein, E. S., Kilpatrick, S. T. & Goldstein, E. S. (eds.). 10th ed ed. Sudbury, Mass. : Jones and Bartlett Publishers, p. 282-298 16 p. (Jones and Bartlett books in computer science).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Education

  6. Published

    Alkalilactibacillus ikkensis, gen. nov., sp. nov., a novel enzyme-producing bacterium from a cold and alkaline environment in Greenland

    Schmidt, M., Priemé, Anders, Johansen, A. & Stougaard, P., 2012, In: Extremophiles. 16, 2, p. 297-305 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Arsukibacterium ikkense gen. nov., sp. nov, a novel alkaliphilic, enzyme-producing ¿-proteobacterium isolated from a cold and alkaline environment in Greenland

    Schmidt, M., Priemé, Anders & Stougaard, P., 2007, In: Systematic and Applied Microbiology. 30, 3, p. 197-201 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Biomimetic studies of wood decay: Simulating the effect of low molecular weight compounds and fungal enzymes

    Hastrup, A. C. S., Howell, C. & Jellison, J., 2007. 16 p.

    Research output: Contribution to conference › Poster › Research

  9. Published

    In Vivo Detection and Quantification of Tetracycline by Use of a Whole-Cell Biosensor in the Rat Intestine

    Bahl, M. I., Hansen, Lars Hestbjerg, Licht, T. R. & Sørensen, Søren Johannes, 2004, In: Antimicrobial Agents and Chemotherapy. 48, 4, p. 1112-1117

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Liparis - Synonomy, phylogenetics, taxonomic notes

    Cribb, P. & Rasmussen, Finn N., 2005, Genera Orchidacearum vol. 4 (Part one). Pridgeon, A. M., Cribb, P. J., Chase, M. W. & Rasmussen, F. N. (eds.). Oxford: Oxford University Press, Vol. 4. p. 465-471 8 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research

  11. Published

    Rhodonellum psychrophilum gen. nov., sp. nov., a novel psychrophilic and alkaliphilic bacterium of the phylum Bacteroidetes isolated from Greenland

    Schmidt, M., Priemé, Anders & Stougaard, P., 2006, In: International Journal of Systematic and Evolutionary Microbiology. 56, p. 2887-2892 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Serpula lacrymans, The Dry Rot Fungus and Tolerance Towards Copper-Based Wood Preservatives

    Hastrup, A. C. S., Jensen, B., Clausen, C. & Green III, F., 2005, Ikke angivet: 36th Annual Meeting. U. S. Forest Service. Tree Search; Washington, D.C., Vol. IRG/WP 05. p. 1-7

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research

  13. Published

    Stichorkis - Synonomy, taxonomic notes

    Cribb, P. & Rasmussen, Finn N., 2005, Genera Orchidacearum vol. 4 (Part one). Pridgeon, A. M., Cribb, P. J., Chase, M. W. & Rasmussen, F. N. (eds.). Oxford: Oxford University Press, Vol. 4. p. 483–487 4 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research

  14. Published

    Warmingia margaritaceae sp. nov. from Costa Rica and a review of the genus

    Johansen, B. B., 1992, In: Lindleyana. 7, 4, p. 194-198

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Acromyrmex leaf-cutting ants have simple gut microbiota with nitrogen-fixing potential

    Sapountzis, P., Zhukova, M., Hansen, Lars Hestbjerg, Sørensen, Søren Johannes, Schiøtt, M. & Boomsma, Jacobus J., 2015, In: Applied and Environmental Microbiology. 81, 16, p. 5527-5537 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Hordeum vulgare differentiates its response to beneficial bacteria

    Duan, Y., Han, M., Grimm, M., Schierstaedt, J., Imani, J., Cardinale, M., Le Jean, M., Nesme, Joseph, Sørensen, Søren Johannes & Schikora, A., 2023, In: BMC Plant Biology. 23, 1, 16 p., 460.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    In Vitro Community Synergy between Bacterial Soil Isolates Can Be Facilitated by pH Stabilization of the Environment

    Herschend, J., Koren, K., Røder, Henriette Lyng, Brejnrod, A., Kühl, Michael & Burmølle, Mette, 2018, In: Applied and Environmental Microbiology. 84, 21, e01450.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    In situ metabolomic- and transcriptomic-profiling of the host-associated cyanobacteria Prochloron and Acaryochloris marina

    Behrendt, L., Raina, J., Lutz, A., Kot, W., Albertsen, M., Nielsen, P. H., Sørensen, Søren Johannes, Larkum, A. W. D. & Kühl, Michael, 2018, In: I S M E Journal. 12, p. 556–567 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    In vitro community synergy between bacterial soil isolates can be facilitated by pH stabilisation of the environment.

    Herschend, J., Koren, K., Røder, Henriette Lyng, Brejnrod, A. D., Kühl, Michael & Burmølle, Mette, 2018, In: Applied and Environmental Microbiology. 84, 21, p. 1-15 e01450-18.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Papio spp. Colon microbiome and its link to obesity in pregnancy

    Li, Xuan Ji, Rensing, C., Taylor, W. L., Costelle, C., Brejnrod, A. D., Ferry, R. J. ,. J., Higgins, P. B., Folli, F., Kottapalli, K. R., Hubbard, G. B., Dick, E. J. ,. J., Yooseph, S., Nelson, K. E. & Schlabritz-Loutsevitch, N., Dec 2018, In: Journal of Medical Primatology. 47, 6, p. 393-401

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Pseudomonas aeruginosa tolerance to tobramycin, hydrogen peroxide and polymorphonuclear leukocytes is quorum-sensing dependent

    Bjarnsholt, Thomas, Jensen, Peter Østrup, Burmølle, Mette, Hentzer, M., Haagensen, J. A. J., Hougen, H. P., Calum, H., Madsen, K. G., Moser, Claus Ernst, Molin, S., Høiby, Niels & Givskov, Michael, Feb 2005, In: Microbiology. 151, Pt 2, p. 373-83 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Salmonella persistence in soil depends on reciprocal interactions with indigenous microorganisms

    Schierstaedt, J., Jechalke, S., Nesme, Joseph, Neuhaus, K., Sørensen, Søren Johannes, Grosch, R., Smalla, K. & Schikora, A., 2020, In: Environmental Microbiology. 22, 7, p. 2639-2652 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Staphylococcus aureus coagulases are exploitable yet stable public goods in clinically relevant conditions

    Trivedi, Urvish, Madsen, Jonas Stenløkke, Everett, J., Fell, C., Russel, J., Haaber, J., Crosby, H. A., Horswill, A. R., Burmølle, Mette, Rumbaugh, K. P. & Sørensen, Søren Johannes, 11 Dec 2018, In: Proceedings of the National Academy of Sciences of the United States of America. 115, 50, p. E11771-E11779

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Age- and tactic-related paternity success in male African elephants

    Rasmussen, H. B., Okello, J. B. A., Wittemyer, G., Siegismund, Hans Redlef, Arctander, P., Vollrath, F. & Douglas-Hamilton, I., 2008, In: Behavioral Ecology. 19, 1, p. 9-15

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Methanol improves methane uptake in starved methanotrophic microorganisms

    Priemé, Anders, Bakken, L. R. & Jensen, S., 1998, In: Applied and Environmental Microbiology. 64, p. 1143-1146 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    A Bayesian multilocus association method: allowing for higher-order interaction in association studies

    Albrechtsen, Anders, Castella, S., Andersen, G., Hansen, T., Pedersen, O. & Nielsen, Rasmus, 2007, In: Genetics. 176, 2, p. 1197-208 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    A Multivariate Study on Genetic Variation in Teak (Tectona grandis (L.))

    Kjær, Erik Dahl, Siegismund, Hans Redlef & Suangtho, V., 1996, In: Silvae Genetica. 45, 5–6, p. 361-368

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    A combined DNA-microsatellite and isozyme analysis of the population structure of the harbour porpoise in Danish waters and west Greenland

    Andersen, L. W., Holm, L. E., Siegismund, Hans Redlef, Clausen, B., Kinze, C. C. & Loeschcke, V., 1997, In: Heredity. 78, 3, p. 270-276 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    A community resource for paired genomic and metabolomic data mining

    Schorn, M. A., Verhoeven, S., Ridder, L., Huber, F., Acharya, D. D., Aksenov, A. A., Aleti, G., Moghaddam, J. A., Aron, A. T., Aziz, S., Bauermeister, A., Bauman, K. D., Baunach, M., Beemelmanns, C., Beman, J. M., Berlanga-Clavero, M. V., Blacutt, A. A., Bode, H. B., Boullie, A., Brejnrod, A. & 90 others, Bugni, T. S., Calteau, A., Cao, L., Carrión, V. J., Castelo-Branco, R., Chanana, S., Chase, A. B., Chevrette, M. G., Costa-Lotufo, L. V., Crawford, J. M., Currie, C. R., Cuypers, B., Dang, T., de Rond, T., Demko, A. M., Dittmann, E., Du, C., Drozd, C., Dujardin, J., Dutton, R. J., Edlund, A., Fewer, D. P., Garg, N., Gauglitz, J. M., Gentry, E. C., Gerwick, L., Glukhov, E., Gross, H., Gugger, M., Matus, D. G. G., Helfrich, E. J. N., Hempel, B., Hur, J., Iorio, M., Jensen, P. R., Kang, K. B., Kaysser, L., Kelleher, N. L., Kim, C. S., Kim, K. H., Koester, I., König, G. M., Leao, T., Lee, S. R., Lee, Y., Li, Xuan Ji, Little, J. C., Maloney, K. N., Männle, D., Martin H., C., McAvoy, A. C., Metcalf, W. W., Mohimani, H., Molina-Santiago, C., Moore, B. S., Mullowney, M. W., Muskat, M., Nothias, L., O'Neill, E. C., Parkinson, E. I., Petras, D., Piel, J., Pierce, E. C., Pires, K., Reher, R., Romero, D., Roper, M. C., Rust, M., Saad, H., Saenz, C., Sanchez, L. M., Sørensen, Søren Johannes, Sosio, M., Süssmuth, R. D., Sweeney, D., Tahlan, K., Thomson, R. J., Tobias, N. J., Trindade-Silva, A. E., van Wezel, G. P., Wang, M., Weldon, K. C., Zhang, F., Ziemert, N., Duncan, K. R., Crüsemann, M., Rogers, S., Dorrestein, P. C., Medema, M. H. & van der Hooft, J. J. J., 2021, In: Nature Chemical Biology. 17, 4, p. 363-368

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    A comparison of short-read, HiFi long-read, and hybrid strategies for genome-resolved metagenomics

    Eisenhofer Philipona, Raphael A, Nesme, J., Santos-Bay, Luisa, Koziol, Adam Leslie, Sørensen, Søren Johannes, Alberdi, Antton & Aizpurua Arrieta, Ostaizka, 2024, In: Microbiology Spectrum. 12, 4, 14 p., e03590-23.

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    A converging subset of soil bacterial taxa is permissive to the IncP-1 plasmid pKJK5 across a range of soil copper contamination

    Song, J., Klümper, U., Riber, Leise, Dechesne, A., Smets, B. F., Sørensen, Søren Johannes & Brandt, Kristian Koefoed, 2020, In: FEMS Microbiology Ecology. 96, 11, 10 p., fiaa200.

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    A culture-independent method for studying transfer of IncI1 plasmids from wild-type Escherichia coli in complex microbial communities

    Anjum, M., Madsen, Jonas Stenløkke, Espinosa-Gongora, C., Jana, B., Wiese, M., Nielsen, Dennis Sandris, Sørensen, Søren Johannes, Moodley, Arshnee, Bortolaia, V. & Guardabassi, Luca, Sep 2018, In: Journal of Microbiological Methods. 152, p. 18-26 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    A hidden Markov model approach for determining expression from genomic tiling micro arrays

    Terkelsen, K. M., Gardner, P. P., Arctander, P. & Krogh, Anders, 2006, In: BMC Bioinformatics. 7, 239

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    A highly selective quantitative polymerase chain reactionprotocol for Burkholderia and Pseudomonas bacteria tested in soil

    Bergmark, L., Burmølle, Mette, Hansen, Lars Hestbjerg, Abu Al-Soud, W. & Sørensen, Søren Johannes, Aug 2010.

    Research output: Contribution to conference › Poster › Research

  35. Published

    A host of armor: Prokaryotic immune strategies against mobile genetic elements

    Mayo-Muñoz, D., Pinilla Redondo, Rafael, Birkholz, N. & Fineran, P. C., 2023, In: Cell Reports. 42, 7, 14 p., 112672.

    Research output: Contribution to journal › Review › Research › peer-review

  36. Published

    A low-cost, multiplexable, automated flow cytometry procedure for the characterization of microbial stress dynamics in bioreactors

    Brognaux, A., Han, S., Sørensen, Søren Johannes, Lebeau, F., Thonart, P. & Delvigne, F., 2013, In: Microbial Cell Factories. 12, 100, 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    A maternal gluten-free diet reduces inflammation and diabetes incidence in the offspring of NOD mice

    Hansen, Camilla Hartmann Friis, Krych, Lukasz, Buschard, K., Metzdorff, S. B., Nellemann, C. L., Hansen, Lars Hestbjerg, Nielsen, Dennis Sandris, Frøkiær, Hanne, Skov, Søren & Hansen, Axel Kornerup, 2014, In: Diabetes. 63, 8, p. 2821-2832 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    A mechanism for ParB-dependent waves of ParA, a protein related to DNA segregation during cell division in prokaryotes

    Hunding, A., Gerdes, K. & Charbon, G. E., 2003, In: Journal of Molecular Biology. 329, 1, p. 35-43 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    A meta-proteomics approach to study the interspecies interactions affecting microbial biofilm development in a model community

    Herschend, J., Damholt, Z. B. V., Marquard, A. M., Svensson, B., Sørensen, Søren Johannes, Hägglund, Per Mårten & Burmølle, Mette, 28 Nov 2017, In: Scientific Reports. 7, 13 p., 16483.

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    A new baleen whale from the Late Miocene of Denmark and early mysticete hearing

    Steeman, M. E., 2009, In: Palaeontology. 52, 5, p. 1169-1190

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    A novel and affordable bioaugmentation strategy with microbial extracts to accelerate the biodegradation of emerging contaminants in different media

    Aguilar-Romero, I., van Dillewijn, P., Nesme, Joseph, Sørensen, Søren Johannes, Nogales, R., Delgado-Moreno, L. & Romero, E., 2022, In: Science of the Total Environment. 834, 10 p., 155234.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    A novel baiting microcosm approach used to identify the bacterial community associated with Penicillium bilaii hyphae in soil

    Ghodsalavi, B., Svenningsen, N. B., Hao, X., Olsson, S., Nicolaisen, Mette Haubjerg, Al-Soud, W. A., Sørensen, Søren Johannes & Nybroe, O., 27 Oct 2017, In: PLOS ONE. 12, 10, 14 p., e0187116.

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    A novel rudivirus, ARV1, of the hyperthermophilic archaeal genus Acidianus

    Vestergaard, G. A., Häring, M., Peng, Xu, Rachel, R., Garrett, Roger Antony & Prangishvili, D., 2005, In: Virology. 336, 1, p. 83-92 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    A phase II study of a 3-day schedule with topotecan and cisplatin every three weeks in patients with previously in treated small cell lung cancer and extensive disease: Final results.

    Lassen, Ulrik Niels, Sorensen, M., Jensen, P., Langer, Seppo W., Jensen, B., Jeppesen, N., Rytter, C., Mellemgaard, A., Hansen, Oddur & Osterlind, K., 15 Jul 2004, In: Journal of Clinical Oncology. 22, 14, p. 667S-667S 1 p.

    Research output: Contribution to journal › Conference article › Research › peer-review

  45. Published

    A post-planktonic era of in vitro infectious models: issues and changes addressed by a clinically relevant wound like media

    Trivedi, Urvish, Madsen, Jonas Stenløkke, Rumbaugh, K. P., Wolcott, R. D., Burmølle, Mette & Sørensen, Søren Johannes, 2017, In: Critical Reviews in Microbiology. 43, 4, p. 453-465 12 p.

    Research output: Contribution to journal › Review › Research › peer-review

  46. Published

    A preliminary analysis of the DNA and diet of the extinct Beothuk: a systematic approach to ancient human DNA.

    Kuch, M., Gröcke, D. R., Knyf, M. C., Gilbert, M Thomas P, Younghusband, B., Young, T., Marshall, I., Willerslev, Eske, Stoneking, M. & Poinar, H., 2007, In: American Journal of Physical Anthropology. 132, 4, p. 594-604 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    A role for copper in protozoan grazing - two billion years selecting for bacterial copper resistance

    Hao, X., Lüthje, F. L., Rønn, Regin, German, N. A., Li, Xuan Ji, Huang, F., Kisaka, J., Huffman, D., Alwathnani, H. A., Zhu, Y. & Rensing, C., 2016, In: Molecular Microbiology. 102, 4, p. 628-641 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    A safflower oil based high-fat/high-sucrose diet modulates the gut microbiota and liver phospholipid profiles associated with early glucose intolerance in the absence of tissue inflammation

    Danneskiold-Samsøe, Niels Banhos, Andersen, D., Radulescu, I. D., Hansen, Ann Normann, Brejnrod, A. D., Kragh, M., Madsen, T., Nielsen, C., Josefsen, K. E., Fretté, X., Fjære, E., Madsen, L., Hellgren, L. I., Brix, S. & Kristiansen, Karsten, May 2017, In: Molecular Nutrition & Food Research. 61, 5, 11 p., 1600528.

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    A short prokaryotic Argonaute activates membrane effector to confer antiviral defense

    Zeng, Z., Chen, Y., Pinilla Redondo, Rafael, Shah, S. A., Zhao, F., Wang, C., Hu, Z., Wu, C., Zhang, C., Whitaker, R. J., She, Q. & Han, W., 2022, In: Cell Host and Microbe. 30, 7, p. 930-943.e6 21 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    A spatiotemporal view of plasmid loss in biofilms and planktonic cultures: [plus] Erratum

    Madsen, Jonas Stenløkke, Burmølle, Mette & Sørensen, Søren Johannes, 2013, In: Biotechnology and Bioengineering (Print). 110, 12, p. 3071-3074 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

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