Microbiology

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  1. Published

    基于 QMEC 分析的青藏高原不同类型冰川前缘地土壤微生物功能潜力

    Zhang, J. J., Priemé, Anders, Chen, X. K., Zhou, H. C., Zhang, Q. W., Zhuang, X. L., Qin, X., Zhuang, G. Q. & Ma, A. Z., 2023, In: Huanjing Kexue/Environmental Science. 44, 1, p. 512-519 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  2. Published

    Über die Bestäubung von Ophrys speculum Link auf Mallorca

    Jacobsen, Niels & Rasmussen, Finn N., 1976, In: Orchidee. 27, p. 64-66 3 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

     Spatial variability of methane, nitrous oxide, and carbon dioxide emissions from drained grasslands

    Priemé, Anders, 1998, In: Soil Science Society of America Journal. 62, p. 810 817 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

     Production and emission of methane in a brackish and a freshwater wetland

    Priemé, Anders, 1994, In: Soil Biology & Biochemistry. 26, p. 7-18 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

     An interdisciplinary approach for studying greenhouse gases at the landscape scale

    Sitaula, B., Warner, W., Bakken, L., Hargreaves, K., Klemedtsson, L., Sitaula, J., Christensen, Søren & Priemé, Anders, 1995, In: Norwegian Journal of Agricultural Sciences. 9, 3-4, p. 189-209 21 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Zackenberg Basic: The BioBasic programme

    Hansen, J., Hansen, Lars Hestbjerg, Tamstrof, M., Christoffersen, Kirsten Seestern, Jeppesen, E. & Schmidt, N. M., 2008, Zackenberg Ecological Research Operations, 13th Annual Report 2007: Danish Polar Center 2008, Danish Agency for Science, Technology and Innovation, Ministry of Science, Technology and Innovation. Klitgaard, A. B. & Rasch, M. (eds.). Copenhagen: Danish Polar Center, p. 57-69

    Research output: Chapter in Book/Report/Conference proceeding › Report chapter › Communication

  7. Published

    You don’t have the guts: a diverse set of fungi survive passage through Macrotermes bellicosus termite guts [+ correction]

    Bos, N., Guimaraes, L., Palenzuela, R., Renelies-Hamilton, J., Maccario, Lorrie, Silue, S. K., Koné, N. A. & Poulsen, Michael, 2020, In: BMC Evolutionary Biology. 20, 11 p., 163.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Whole-genome shotgun sequencing of mitochondria from ancient hair shafts.

    Gilbert, M. T. P., Tomsho, L. P., Rendulic, S., Packard, M., Drautz, D. I., Sher, A., Tikhonov, A., Dalén, L., Kuznetsova, T., Kosintsev, P., Campos, P. F., Higham, T., Collins, M. J., Wilson, A. S., Shidlovskiy, F., Buigues, B., Ericson, P. G. P., Germonpré, M., Götherström, A., Iacumin, P. & 11 others, Nikolaev, V., Nowak-Kemp, M., Willerslev, Eske, Knight, J. R., Irzyk, G. P., Perbost, C. S., Fredrikson, K. M., Harkins, T. T., Sheridan, S., Miller, W. & Schuster, S. C., 2007, In: Science. 317, 5846, p. 1927-30 3 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Whole-genome sequence of Pseudomonas fluorescens EK007-RG4, a promising biocontrol agent against a broad range of bacteria, including the fire blight bacterium Erwinia amylovora

    Habibi, R., Tarighi, S., Behravan, J., Taheri, P., Kjøller, Annelise Helene, Brejnrod, A. D., Madsen, Jonas Stenløkke & Sørensen, Søren Johannes, 2017, In: Genome Announcements. 5, 13, 2 p., e00026-17.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Where sociality and relatedness diverge: the genetic basis for hierarchical social organization in African elephants

    Wittemyer, G., Okello, J. B. A., Rasmussen, H. B., Arctander, P., Nyakaana, S., Douglas-Hamilton, I. & Siegismund, Hans Redlef, 2009, In: PROCEEDINGS OF THE ROYAL SOCIETY OF LONDON SERIES B-CONTAINING PAPERS OF A BIOLOGICAL CHARACTER. 276, 1672, p. 3513-3521

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    When less is more: shortening the Lpp protein leads to increased vancomycin resistance in Escherichia coli

    Wykes, H., Le, Van Hung Vuong, Olivera, Catrina Diane Peralta & Rakonjac, J., 2023, In: Journal of Antibiotics. 76, p. 746-750 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    When it makes sense to socialize whilst being on the move: A small EAL-domain containing protein, encoded on natural biofilm-promoting plasmids, triggers motility

    Madsen, Jonas Stenløkke, Riber, Leise, Burmølle, Mette, Hansen, Lars Hestbjerg & Sørensen, Søren Johannes, 2012.

    Research output: Contribution to conference › Poster › Research

  13. Published

    West Africa´s savannahs under change: integrated view on positive and negative effects of agriculture and land cover changes on carbon cycling and trace gas emission

    Nacro, H. B., Struwe, Sten, Abbadie, L., Abekoe , K. M., Andersson, M., Attua, E. M., Badiane, A., Bilbao, B., Bonzi, M., Danso, S. K. A., Gignoux, J., Lensi , R., Khouma, M., Kjøller, Annelise Helene, Konaté, S., Manlay, M., Neill, C., Ouattara, B. & Tondoh, E. J., 2011, Africa and the Carbon Cycle: Proceedings of the Open Science Conference on “Africa and Carbon Cycle: the CarboAfrica project” : Accra (Ghana) 25-27 November 2008. Food and Agriculture Organization of the United Nations, p. 55-61 7 p. (Food and Agriculture Organization of the United Nations. World Soil Resources Reports; No. 105).

    Research output: Chapter in Book/Report/Conference proceeding › Report chapter › Research

  14. Published

    Warming, shading and a moth outbreak reduce tundra carbon sink strength dramatically by changing plant cover and soil microbial activity

    Dahl, M. B., Priemé, Anders, Brejnrod, A. D., Brusvang, P., Lund, M., Nymand, J., Kramshøj, M., Ro-Poulsen, Helge & Haugwitz, M. S., 22 Nov 2017, In: Scientific Reports. 7, 13 p., 16035.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Warmer winters result in reshaping of the European beech forest soil microbiome (bacteria, archaea and fungi) - With potential implications for ecosystem functioning

    Dahl, M. B., Kreyling, J., Petters, S., Wang, H., Mortensen, M. S., Maccario, Lorrie, Sørensen, Søren Johannes, Urich, T. & Weigel, R., 2023, In: Environmental Microbiology. 25, 6, 18 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Vitamin D and allergic airway disease shape the murine lung microbiome in a sex-specific manner

    Roggenbuck, M., Anderson, D., Barfod, K. K., Feelisch, M., Geldenhuys, S., Sørensen, Søren Johannes, Weeden, C. E., Hart, P. H. & Gorman, S., 2016, In: Respiratory Research. 17, 18 p., 116.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Virus-host and CRISPR dynamics in archaea-dominated hypersaline Lake Tyrrell, Victoria, Australia

    Emerson, J. B., Andrade, K., Thomas, B. C., Norman, A., Allen, E. E., Heidelberg, K. B. & Banfield, J. F., 2013, In: Archaea. 2013, 12 p., 370871.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Very Old DNA

    Hebsgaard, M. B. & Willerslev, Eske, 2009, Permafrost Soils. Margesin, R. (ed.). Springer, Vol. 16. p. 47-59 (Soil Biology, Vol. 16).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research

  19. Published

    Versatile biosensor vectors for detection and quantification of mercury

    Hansen, Lars Hestbjerg & Sørensen, Søren Johannes, 2000, In: FEMS Microbiology Letters. 193, 1, p. 123-127

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Vegetationen i kridtbruddet "Dania" ved Mariager Fjord

    Jacobsen, Niels, Larsen, H. & Rasmussen, Finn N., 1976, In: Botanisk Tidsskrift. 70, p. 184-187 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Vaginal dysbiosis in pregnancy associates with risk of emergency caesarean section: a prospective cohort study

    Haahr, T., Clausen, Tine Dalsgaard, Thorsen, J., Rasmussen, Morten Arendt, Mortensen, M. S., Lehtimäki, J., Shah, S. A., Hjelmsø, M. H., Bønnelykke, Klaus, Chawes, Bo Lund Krogsgaard, Vestergaard, G., Jacobsson, B., Larsson, P., Brix, S., Sørensen, Søren Johannes, Bisgaard, H. & Stokholm, Jakob, 2022, In: Clinical Microbiology and Infection. 28, 4, p. Pages 588-595

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Using Nanopore Sequencing Deciphering Antibiotic Resistance Dissemination In The Wastewater Systems

    Wu, Bruce, 2024, Department of Biology, Faculty of Science, University of Copenhagen. 185 p.

    Research output: Book/Report › Ph.D. thesis › Research

  23. Published

    Use of Probiotics to Control Biofilm Formation in Food Industries

    Tomé, A. R., Carvalho, F. M., Teixeira-Santos, R., Burmølle, Mette, Mergulhão, F. J. M. & Gomes, L. C., 2023, In: Antibiotics. 12, 4, 17 p., 754.

    Research output: Contribution to journal › Review › Research › peer-review

  24. Published

    Urbanized microbiota in infants, immune constitution and later risk of atopic diseases

    Lehtimäki, J., Thorsen, Jonathan Jan Ilve, Rasmussen, Morten Arendt, Hjelmsø, M., Shah, S., Mortensen, M. S., Trivedi, Urvish, Vestergaard, G., Bønnelykke, Klaus, Chawes, Bo Lund Krogsgaard, Brix, S., Sørensen, Søren Johannes, Bisgaard, H. & Stokholm, Jakob, 2021, In: Journal of Allergy and Clinical Immunology. 148, 1, p. 234-243 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Up-scaling of water use efficiency from leaf to canopy as based on leaf gas exchange relationships and the modeled in-canopy light distribution

    Linderson, M., Mikkelsen, T. N., Ibrom, A., Lindroth, A., Ro-Poulsen, Helge & Pilegaard, K., 2012, In: Agricultural and Forest Meteorology. 152, p. 201-211 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    Unvereträglichkeit bei der Bestäubung von Dendrobien

    Johansen, B. B., 1993, In: Die Orchidee. p. 242-246

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    Unravelling the mechanisms of bacterial interactions in model communities

    Herschend, J., 2016, Department of Biology, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  28. Published

    Unravelling plasmidome distribution and interaction with its hosting microbiome

    Kav, A. B., Rozov, R., Bogumil, D., Sørensen, Søren Johannes, Hansen, Lars Hestbjerg, Benhar, I., Halperin, E., Shamir, R. & Mizrahi, I., 2020, In: Environmental Microbiology. 22, 1, p. 32-44

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    Unravelling interspecies interactions across heterogeneities in complex biofilm communities

    Røder, Henriette Lyng, Olsen, N. M. C., Whiteley, M. & Burmølle, Mette, 2020, In: Environmental Microbiology. 22, 1, p. 5-16 12 p.

    Research output: Contribution to journal › Review › Research › peer-review

  30. Published

    Unravelling animal–microbiota evolution on a chip

    Aizpurua Arrieta, Ostaizka, Blijleven, Kees, Trivedi, Urvish, Gilbert, M Thomas P & Alberdi, Antton, 2023, In: Trends in Microbiology. 31, 10, p. 995-1002 8 p.

    Research output: Contribution to journal › Review › Research › peer-review

  31. Published

    Unexpected diversity among small-scale sample replicates of defined plant root compartments

    Attia, S., Russel, J., Mortensen, M. S., Madsen, Jonas Stenløkke & Sørensen, Søren Johannes, 2022, In: ISME Journal. 16, 4, p. 997-1003 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    Udviklingen i dødelighed, incidens og letalitet af iskaemisk hjertesygdom i Danmark 1982-1992.

    Osler, Merete, Sørensen, Thorkild I.A., Sørensen, S., Rostgaard, K., Jensen, G. B., Iversen, L., Kristensen, T. S. & Madsen, Mette, 1997, In: Ugeskrift for læger. 159, 37, p. 5508-13 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    UG/Abi: a highly diverse family of prokaryotic reverse transcriptases associated with defense functions

    Rodríguez Mestre, Mario, Gao, L. A., Shah, S. A., López-Beltrán, A., González-Delgado, A., Martínez-Abarca, F., Iranzo, J., Redrejo-Rodríguez, M., Zhang, F. & Toro, N., 24 Jun 2022, In: Nucleic Acids Research. 50, 11, p. 6084-6101 18 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    Type IV CRISPR-Cas systems are highly diverse and involved in competition between plasmids

    Pinilla Redondo, Rafael, Mayo-Muñoz, D., Russel, J., Garrett, Roger Antony, Randau, L., Sørensen, Søren Johannes & Shah, S. A., 2020, In: Nucleic Acids Research. 48, 4, p. 2000-2012 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    Type 3 fimbriae, encoded by the conjugative plasmid pOLA52, enhance biofilm formation and transfer frequencies in Enterobacteriaceae strains

    Burmølle, Mette, Bahl, M. I., Jensen, L. B., Sørensen, Søren Johannes & Hansen, Lars Hestbjerg, 2008, In: Microbiology. 154, Pt 1, p. 187-95 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    Type 3 fimbriae encoded on plasmids are expressed from a unique promoter without affecting host motility, facilitating an exceptional phenotype that enhances conjugal plasmid transfer

    Madsen, Jonas Stenløkke, Riber, Leise, Kot, Witold, Basfeld, A., Burmølle, Mette, Hansen, Lars Hestbjerg & Sørensen, Søren Johannes, 2016, In: P L o S One. 11, 9, 19 p., e0162390.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    Triclosan affects the microbial community in simulated sewage-drain-field soil and slows down xenobiotic degradation

    Svenningsen, H., Henriksen, T., Priemé, Anders & Johnsen, A. R., 2011, In: Environmental Pollution. 159, 6, p. 1599-1605 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    Tribus Vandeae

    Rasmussen, Finn N., 1985, Dansk orkideklub 1960-1985. Sterll, M. & Valstedgård, H. (eds.). København, p. 4-17 14 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Communication

  39. Published

    Transfusion-transmitted human immunodeficiency virus infection by a Danish blood donor with a very low viral load in the preseroconversion window phase

    Harritshøj, Lene Holm, Dickmeiss, E., Hansen, M. B., Ullum, H., Jørgensen, L. B. & Gerstoft, Jan, 2008, In: Transfusion. 48, 9, p. 2026-2028 2 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    Transcriptome-Stable Isotope Probing Provides Targeted Functional and Taxonomic Insights Into Microaerobic Pollutant-Degrading Aquifer Microbiota

    Bradford, L. M., Vestergaard, G., Táncsics, A., Zhu, B., Schloter, M. & Lueders, T., 2018, In: Frontiers in Microbiology. 9, 13 p., 2696.

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    Trans-kingdom interactions in mixed biofilm communities

    Sadiq, F. A., Hansen, Mads Frederik, Burmølle, Mette, Heyndrickx, M., Flint, S., Lu, W., Chen, W. & Zhang, H., 2022, In: F E M S Microbiology Reviews. 46, 5, 20 p., fuac024.

    Research output: Contribution to journal › Review › Research › peer-review

  42. Published

    Tracking down human contamination in ancient human teeth.

    Sampietro, M. L., Gilbert, M Thomas P, Lao, O., Caramelli, D., Lari, M., Bertranpetit, J. & Lalueza-Fox, C., 2006, In: Molecular Biology and Evolution. 23, 9, p. 1801-7 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    Total RNA sequencing reveals multilevel microbial community changes and functional responses to wood ash application in agricultural and forest soil

    Bang-Andreasen, T., Anwar, M. Z., Lanzén, A., Kjøller, Rasmus, Rønn, Regin, Ekelund, Flemming & Jacobsen, C. S., 2020, In: FEMS Microbiology Ecology. 96, 3, 13 p., fiaa016.

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    Tolerance of Serpula lacrymans to copper-based wood preservatives

    Hastrup, A. C. S., Green, F., Clausen, C. A. & Jensen, B., 2005, In: International Biodeterioration & Biodegradation. 56, p. 173-177

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    To assemble or not to resemble - A validated Comparative Metatranscriptomics Workflow (CoMW)

    Anwar, M. Z., Lanzen, A., Bang-Andreasen, T. & Jacobsen, C. S., 2019, In: GigaScience. 8, 8, 10 p., giz096.

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    Tillage shapes the soil and rhizosphere microbiome of barley - but not its susceptibility towards Blumeria graminis f. sp. hordei

    Bziuk, N., Maccario, Lorrie, Douchkov, D., Lueck, S., Babin, D., Sørensen, Søren Johannes, Schikora, A. & Smalla, K., 2021, In: FEMS Microbiology Ecology. 97, 3, 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    Three reciprocally monophyletic mtDNA lineages elucidate the taxonomic status of Grant's gazelles

    Lorenzen, Eline, Arctander, P. & Siegismund, Hans Redlef, 2008, In: Conservation Genetics. 9, 3, p. 593-601

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    The validation and assessment of machine learning: a game of prediction from high-dimensional data

    Pers, Tune H, Albrechtsen, Anders, Holst, C., Sørensen, Thorkild I.A. & Gerds, Thomas Alexander, 2009, In: PLoS ONE. 4, 8, p. e6287

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    The use of whole-cell biosensors to detect and quantify compounds or conditions affecting biological systems

    Hansen, Lars Hestbjerg & Sørensen, Søren Johannes, 2001, In: Microbial Ecology. 42, 4, p. 483-494

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    The use of coded PCR primers enables high-throughput sequencing of multiple homolog amplification products by 454 parallel sequencing.

    Binladen, J., Gilbert, M Thomas P, Bollback, J. P., Panitz, F., Bendixen, C., Nielsen, Rasmus & Willerslev, Eske, 2007, In: PLoS ONE. 2, 2, p. e197

    Research output: Contribution to journal › Journal article › Research › peer-review

  51. Published

    The use of biomimetic surfaces to reduce single- and dual-species biofilms of Escherichia coli and Pseudomonas putida

    Teixeira-Santos, R., Azevedo, A., Romeu, M. J., Amador Hierro, Cristina Isabel, Gomes, L. C., Whitehead, K. A., Sjollema, J., Burmølle, Mette & Mergulhão, F. J., 2024, In: Biofilm. 7, 13 p., 100185.

    Research output: Contribution to journal › Journal article › Research › peer-review

  52. Published

    The use of X-ray diffraction for analyzing biomodification of crystalline cellulose by wood decay fungi

    Howell, C., Hastrup, A. C. S. & Jellison, J., 2007, International Research Group on Wood Preservation: 38th Annual Meeting. IRG/WP 07-10622 ed. IRG, Vol. IRG/WP 07. 16 p.

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research

  53. Published

    The treasure inside barley seeds: microbial diversity and plant beneficial bacteria

    Bziuk, N., Maccario, Lorrie, Straube, B., Wehner, G., Sørensen, Søren Johannes, Schikora, A. & Smalla, K., 2021, In: Environmental Microbiomes. 16, 21 p., 20.

    Research output: Contribution to journal › Journal article › Research › peer-review

  54. Published

    The serine protease Esperase HPF inhibits the formation of multispecies biofilm

    Hangler, M., Burmølle, Mette, Schneider, I., Allermann, K. & Jensen, B., 2009, In: Biofouling. 25, 7, p. 667-674 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  55. Published

    The scent of symbiosis: gut bacteria may affect social interactions in leaf-cutting ants

    Teseo, S., van Zweden, J. S., Pontieri, L., Kooij, P. W., Sørensen, Søren Johannes, Wenseleers, T., Poulsen, Michael, Boomsma, Jacobus J. & Sapountzis, P., 2019, In: Animal Behaviour. 150, p. 239-254

    Research output: Contribution to journal › Journal article › Research › peer-review

  56. Published

    The role of GH receptor tyrosine phosphorylation in Stat5 activation

    Hansen, J. A., Hansen, Lars Hestbjerg, Wang, X., Kopchick, J. J., Gouilleux, F., Groner, B., Møldrup, A., Galsgaard, E. D., Nielsen, Jens Høiriis & Billestrup, Nils, Jun 1997, In: Journal of Molecular Endocrinology. 18, 3, p. 213-21 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  57. Published

    The role of Botanic Gardens in Orchid Research

    Rasmussen, Hanne Nina & Rasmussen, Finn N., 1989. 1 p.

    Research output: Contribution to conference › Conference abstract for conference › Research

  58. Published

    The rise and fall of Scalidophora - New insights in the phylogenetic position of Loricifera

    Sørensen, Martin Vinther, Hebsgaard, M. B., Heiner, I., Glenner, H., Kristensen, Reinhardt Møbjerg & Willerslev, Eske, 2008, Proceedings of the 13th International Meiofauna Conference. 1 p.

    Research output: Chapter in Book/Report/Conference proceeding › Conference abstract in proceedings › Research

  59. Published

    The presence of embedded bacterial pure cultures in agar plates stimulate the culturability of soil bacteria.

    Burmølle, Mette, Johnsen, K., Abu Al-Soud, W. M. A. F., Hansen, Lars Hestbjerg & Sørensen, Søren Johannes, 2009, In: Journal of Microbiological Methods. 79, 2, p. 166-173 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  60. Published

    The potential for bioaugmentation of sand filter materials from waterworks using bacterial cultures degrading 4-chloro-2-methylphenoxyacetic acid

    Krüger, U. S., Johnsen, A. R., Burmølle, Mette, Aamand, J. & Sørensen, S. R., 1 Feb 2015, In: Pest Management Science. 71, 2, p. 257-265 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  61. Published

    The origin of king crabs: hermit crab ancestry under the magnifying glass

    Noever, C. & Glenner, Henrik, 19 Jan 2018, In: Zoological Journal of the Linnean Society. 182, 2, p. 300-318

    Research output: Contribution to journal › Journal article › Research › peer-review

  62. Published

    The nitrogenase gene pool in surface waters of the global ocean is dominated by genes of non-cyanobacteria

    Farnelid, H., Andersson, A., Bertilsson, S., Abu Al-Soud, W., Hansen, Lars Hestbjerg, Sørensen, Søren Johannes, Hagström & Riemann, Lasse, 2010.

    Research output: Contribution to conference › Poster › Research

  63. Published

    The needle mycobiome of Picea glauca – A dynamic system reflecting surrounding environment and tree phenological traits

    Würth, D. G., Dahl, M. B., Trouillier, M., Wilmking, M., Unterseher, M., Scholler, M., Sørensen, Søren Johannes, Mortensen, M. & Schnittler, M., 2019, In: Fungal Ecology. 41, p. 177-186 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  64. Published

    The mycorrhizal fungus (Glomus intraradices) affects microbial activity in the rhizosphere of pea plants (Pisum sativum)

    Wamberg, C., Christensen, Søren, Jakobsen, I., Müller, A. K. & Sørensen, Søren Johannes, 2003, In: Soil Biology & Biochemistry. Vol. 35, issue 10, p. 1349-1357

    Research output: Contribution to journal › Journal article › Research › peer-review

  65. Published

    The murine lung microbiome in relation to the intestinal and vaginal bacterial communities

    Barfod, K. K., Roggenbuck, M., Hansen, Lars Hestbjerg, Schjørring, S., Larsen, S. T., Sørensen, Søren Johannes & Krogfelt, K. A., 2013, In: B M C Microbiology. 13, 12 p., 303.

    Research output: Contribution to journal › Journal article › Research › peer-review

  66. Published

    The mitochondrial genome sequence of the Tasmanian tiger (Thylacinus cynocephalus)

    Miller, W., Drautz, D. I., Janecka, J. E., Lesk, A. M., Ratan, A., Tomsho, L. P., Packard, M., Zhang, Y., McClellan, L. R., Qi, J., Zhao, F., Gilbert, M Thomas P, Dalén, L., Arsuaga, J. L., Ericson, P. G. P., Huson, D. H., Helgen, K. M., Murphy, W. J., Götherström, A. & Schuster, S. C., 2009, In: Genome Research. 19, 2, p. 213-20 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  67. Published

    The microbiome of captive hamadryas baboons

    Li, Xuan Ji, Trivedi, Urvish, Brejnrod, A. D., Vestergaard, G. A., Mortensen, M. S., Bertelsen, Mads Frost & Sørensen, Søren Johannes, 2020, In: BMC Animal Microbiome. 2, 10 p., 25.

    Research output: Contribution to journal › Journal article › Research › peer-review

  68. Published

    The microbiome of New World vultures

    Roggenbuck, M., Schnell, I. B., Blom, N., Bælum, J., Bertelsen, M. F., Sicheritz-Pontén, T., Sørensen, Søren Johannes, Gilbert, M Thomas P, Graves, G. R. & Hansen, L. H., 2014, In: Nature Communications. 5, 7 p., 5498.

    Research output: Contribution to journal › Journal article › Research › peer-review

  69. Published

    The maintenance and spread of cooperative antibiotic resistance

    Wang, Q., 2022, Department of Biology, Faculty of Science, University of Copenhagen. 280 p.

    Research output: Book/Report › Ph.D. thesis › Research

  70. Published

    The legacy of climate change effects: previous drought increases short-term litter decomposition rates in a temperate mixed grass- and shrubland

    Haugwitz, M. S., Michelsen, Anders & Priemé, Anders, 2016, In: Plant and Soil. 408, 1, p. 183-193 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  71. Published

    The last Viking King: A royal maternity case solved by ancient DNA analysis

    Dissing, J., Binladen, J., Hansen, Anders Johannes, Sejrsen, B., Willerslev, Eske & Lynnerup, Niels, 2007, In: Forensic Science International. 166, 1, p. 21-7

    Research output: Contribution to journal › Journal article › Research › peer-review

  72. Published

    The isolation of nucleic acids from fixed, paraffin-embedded tissues-which methods are useful when?

    Gilbert, M Thomas P, Haselkorn, T., Bunce, M., Sanchez, J. J., Lucas, S. B., Jewell, L. D., Van Marck, E. & Worobey, M., 2007, In: PLoS ONE. 2, 6, p. e537

    Research output: Contribution to journal › Journal article › Research › peer-review

  73. Published

    The interconnection between biofilm formation and horizontal gene transfer

    Madsen, Jonas Stenløkke, Burmølle, Mette, Hansen, Lars Hestbjerg & Sørensen, Søren Johannes, 2012, In: F E M S Immunology and Medical Microbiology. 65, 2, p. 183-195 13 p.

    Research output: Contribution to journal › Review › Research › peer-review

  74. Published

    The initial inoculation ratio regulates bacterial coculture interactions and metabolic capacity

    Gao, C., Cao, H., Cai, P. & Sørensen, Søren Johannes, 2021, In: ISME Journal. 15, p. 29-40 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  75. Published

    The infant gut virome is associated with preschool asthma risk independently of bacteria

    Rodríguez, C. L., Shah, S. A., Rasmussen, Morten Arendt, Thorsen, J., Boulund, U., Pedersen, C. T., Castro-Mejía, J. L., Poulsen, Christina Egeø, Poulsen, C. S., Deng, Ling, Larsen, Frej Andreas Nøhr, Widdowson, Michael Lawrence, Zhang, Yichang, Sørensen, Søren Johannes, Moineau, S., Petit, M. A., Chawes, Bo Lund Krogsgaard, Bønnelykke, Klaus, Nielsen, Dennis Sandris & Stokholm, Jakob, 2023, In: Nature Medicine. 30, p. 138-148 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  76. Published

    The infant gut resistome associates with E. coli, environmental exposures, gut microbiome maturity, and asthma-associated bacterial composition

    Li, Xuan Ji, Stokholm, Jakob, Brejnrod, A., Vestergaard, G. A., Russel, J., Trivedi, Urvish, Thorsen, Jonathan Jan Ilve, Gupta, S., Hjelmsø, M. H., Shah, S. A., Rasmussen, Morten Arendt, Bisgaard, H. & Sørensen, Søren Johannes, 2021, In: Cell Host & Microbe. 29, 6, p. 975–987.e4 17 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  77. Published

    The impact of the conjugative IncP-1 plasmid pKJK5 on multispecies biofilm formation is dependent on the plasmid host

    Røder, Henriette Lyng, Hansen, Lars Hestbjerg, Sørensen, Søren Johannes & Burmølle, Mette, 2013, In: F E M S Microbiology Letters. 344, 2, p. 186-192 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  78. Published

    The impact of founder events on chromosomal variability in multiply mating species

    Pool, J. E. & Nielsen, Rasmus, 2008, In: Molecular Biology and Evolution. 25, 8, p. 1728-36 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  79. Published

    The impact of exercise training and resveratrol supplementation on gut microbiota composition in high-fat diet fed mice

    Brandt, N., Kotowska, D., Kristensen, C. M., Olesen, J., Lützhøft, Ditte Olsen, Halling, Jens Frey, Hansen, M., Al-Soud, W. A., Hansen, Lars Hestbjerg, Kiilerich, P. & Pilegaard, Henriette, 2018, In: Physiological Reports. 6, 20, p. 1-11 e13881.

    Research output: Contribution to journal › Journal article › Research › peer-review

  80. Published

    The human milk microbiota is modulated by maternal diet

    Padilha, M., Danneskiold-Samsøe, Niels Banhos, Brejnrod, A., Hoffmann, C., Cabral, V. P., Iaucci, J. D. M., Sales, C. H., Fisberg, R. M., Cortez, R. V., Brix, S., Taddei, C. R., Kristiansen, Karsten & Saad, S. M. I., 2019, In: Microorganisms. 7, 11, 18 p., 502.

    Research output: Contribution to journal › Journal article › Research › peer-review

  81. Published

    The human microbiome: one step forward

    Gupta, S., 2020, Department of Biology, Faculty of Science, University of Copenhagen. 120 p.

    Research output: Book/Report › Ph.D. thesis › Research

  82. Published

    The gynostemium of the neottiod orchids

    Rasmussen, Finn N., 1982, In: Opera Botanica. 65, p. 1-96 96 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  83. Published

    The gynostemium of Bulbophyllum ecornutum (J. J. Smith) J. J. Smith (Orchidaceae)

    Rasmussen, Finn N., 1985, In: Botanical Journal of the Linnean Society. 91, p. 447-456 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  84. Published

    The gut microbiota in human adults with type 2 diabetes differs from non-diabetic adults

    Nielsen, Dennis Sandris, Larsen, Nadja, Vogensen, Finn Kvist, van den Berg, F. W. J., Andreasen, A. S., Pedersen, B. K., Abu Al-Soud, W. M. A. F., Sørensen, Søren Johannes, Hansen, Lars Hestbjerg & Jakobsen, M., 2010. 1 p.

    Research output: Contribution to conference › Conference abstract for conference › Research

  85. Published

    The giraffe (Giraffa camelopardalis) rumen microbiome

    Roggenbuck, M., Sauer, C., Poulsen, M., Bertelsen, M. F. & Sørensen, Søren Johannes, 2014, In: F E M S Microbiology Ecology. 90, 1, p. 237-246 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  86. Published

    The genus Corymborkis Thou. (Orchidaceae) a taxonomic revision

    Rasmussen, Finn N., 1977, In: Botanisk Tidsskrift. 71, p. 161-192 32 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  87. Published

    The genome sequence of the lactic acid bacterium, Carnobacterium maltaromaticum ATCC 35586 encodes potential virulence factors

    Leisner, Jørgen, Hansen, M. A., Larsen, M. H., Hansen, L., Ingmer, Hanne & Sørensen, Søren Johannes, 2012, In: International Journal of Food Microbiology. 152, 3, p. 107-115 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  88. Published

    The genome of the social amoeba Dictyostelium discoideum.

    Eichinger, L., Pachebat, J. A., Glöckner, G., Rajandream, M-A., Sucgang, R., Berriman, M., Song, J., Olsen, R., Szafranski, K., Xu, Q., Tunggal, B., Kummerfeld, S., Madera, M., Konfortov, B. A., Rivero, F., Bankier, A. T., Lehmann, R., Hamlin, N., Davies, R., Gaudet, P. & 77 others, Fey, P., Pilcher, K., Chen, G., Saunders, D., Sodergren, E., Davis, P., Kerhornou, A., Nie, X., Hall, N., Anjard, C., Hemphill, L., Bason, N., Farbrother, P., Desany, B., Just, E., Morio, T., Rost, R., Churcher, C., Cooper, J., Haydock, S., van Driessche, N., Cronin, A., Goodhead, I., Muzny, D., Mourier, T., Pain, A., Lu, M., Harper, D., Lindsay, R., Hauser, H., James, K., Quiles, M., Madan Babu, M., Saito, T., Buchrieser, C., Wardroper, A., Felder, M., Thangavelu, M., Johnson, D., Knights, A., Loulseged, H., Mungall, K., Oliver, K., Price, C., Quail, M. A., Urushihara, H., Hernandez, J., Rabbinowitsch, E., Steffen, D., Sanders, M., Ma, J., Kohara, Y., Sharp, S., Simmonds, M., Spiegler, S., Tivey, A., Sugano, S., White, B., Walker, D., Woodward, J., Winckler, T., Tanaka, Y., Shaulsky, G., Schleicher, M., Weinstock, G., Rosenthal, A., Cox, E. C., Chisholm, R. L., Gibbs, R., Loomis, W. F., Platzer, M., Kay, R. R., Williams, J., Dear, P. H., Noegel, A. A., Barrell, B. & Kuspa, A., 2005, In: Nature. 435, 7038, p. 43-57 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  89. Published

    The genome of the simian and human malaria parasite Plasmodium knowlesi

    Pain, A., Böhme, U., Berry, A. E., Mungall, K., Finn, R. D., Jackson, A. P., Mourier, T., Mistry, J., Pasini, E. M., Aslett, M. A., Balasubrammaniam, S., Borgwardt, K., Brooks, K., Carret, C., Carver, T. J., Cherevach, I., Chillingworth, T., Clark, T. G., Galinski, M. R., Hall, N. & 34 others, Harper, D., Harris, D., Hauser, H., Ivens, A., Janssen, C. S., Keane, T., Larke, N., Lapp, S., Marti, M., Moule, S., Meyer, I. M., Ormond, D., Peters, N., Sanders, M., Sanders, S., Sargeant, T. J., Simmonds, M., Smith, F., Squares, R., Thurston, S., Tivey, A. R., Walker, D., White, B., Zuiderwijk, E., Churcher, C., Quail, M. A., Cowman, A. F., Turner, C. M. R., Rajandream, M. A., Kocken, C. H. M., Thomas, A. W., Newbold, C. I., Barrell, B. G. & Berriman, M., 2008, In: Nature. 455, 7214, p. 799-803 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  90. Published

    The genome of Hyperthermus butylicus: a sulfur-reducing, peptide fermenting, neutrophilic Crenarchaeote growing up to 108 degrees C

    Brügger, K., Chen, L., Stark, M., Zibat, A., Redder, P., Ruepp, A., Awayez, M., She, Q., Garrett, Roger Antony & Klenk, H., 2007, In: Archaea. 2, 2, p. 127-35 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  91. Published

    The genetic origins of the Andaman Islanders

    Endicott, P., Gilbert, M Thomas P, Stringer, C., Lalueza-Fox, C., Willerslev, Eske, Hansen, Anders Johannes & Cooper, A., 2002, In: American Journal of Human Genetics. 72, 1, p. 178-84 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  92. Published

    The first record of "spelaeoid" bears in Arctic Siberia

    Sher, A. V., Weinstock Arenovitz, J., Baryshnikov, G. F., Davydov, S. P., Boeskorov, G. G., Zazhigin, V. S. & Nikolskiy, P. A., 2011, In: Quaternary Science Reviews. 30, 17-18, p. 2238-2249 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  93. Published

    The feather moss Hylocomium splendens affects the transcriptional profile of a symbiotic cyanobacterium in relation to acquisition and turnover of key nutrients

    Alvarenga, Danillo Oliveira, Priemé, Anders & Rousk, Kathrin, 2024, In: Microbial Ecology. 87, 11 p., 49.

    Research output: Contribution to journal › Journal article › Research › peer-review

  94. Published

    The fate of mercury in Arctic terrestrial and aquatic ecosystems, a review

    Douglas, T. A., Loseto, L. L., Macdonald, R. W., Outridge, P., Dommergue, A., Poulain, A., Amyot, M., Barkay, T., Berg, T., Chételat, J., Constant, P., Evans, M., Ferrari, C., Gantner, N., Johnson, M. S., Kirk, J., Kroer, N., Larose, C., Lean, D., Nielsen, T. G. & 7 others, Poissant, L., Rognerud, S., Skov, H., Sørensen, Søren Johannes, Wang, F., Wilson, S. & Zdanowicz, C. M., 2012, In: Environmental Chemistry (Online). 9, 4, p. 321-355 35 p.

    Research output: Contribution to journal › Review › Research › peer-review

  95. Published

    The fate of indigenous microbiota, starter cultures, Escherichia coli, Listeria innocua and Staphylococcus aureus in Danish raw milk and cheeses determined by pyrosequencing and quantitative real time (qRT)-PCR

    Masoud, W. M. H., Vogensen, Finn Kvist, Lillevang, S., Abu Al-Soud, W., Sørensen, Søren Johannes & Jakobsen, M., 2012, In: International Journal of Food Microbiology. 153, 1-2, p. 192-202 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  96. Published

    The evolution, phylogeny, and diversity of the monocotyledons - A Danish research project.

    Ågesen, L., Asmussen, C., Frederiksen, S. E., Pedersen, L. B., Rasmussen, Finn N., Johansen, B. B. & Seberg, Ole, 1998. 1 p.

    Research output: Contribution to conference › Conference abstract for conference › Research

  97. Published

    The evolution of virulence in Pseudomonas aeruginosa during chronic wound infection

    Vanderwoude, J., Fleming, D., Azimi, S., Trivedi, Urvish, Rumbaugh, K. P. & Diggle, S. P., 2020, In: Proceedings of the Royal Society B: Biological Sciences. 287, 1937, 10 p., 20202272.

    Research output: Contribution to journal › Journal article › Research › peer-review

  98. Published

    The environmental contribution to the dissemination of carbapenem and (fluoro)quinolone resistance genes by discharged and reused wastewater effluents: The role of cellular and extracellular DNA

    Oliveira, M., Nunes, M., Barreto Crespo, M. T. & Silva, A. F., 2020, In: Water Research. 182, 13 p., 116011.

    Research output: Contribution to journal › Journal article › Research › peer-review

  99. Published

    The emergence of HIV/AIDS in the Americas and beyond.

    Gilbert, M Thomas P, Rambaut, A., Wlasiuk, G., Spira, T. J., Pitchenik, A. E. & Worobey, M., 2007, In: Proceedings of the National Academy of Science of the United States of America. 104, 47, p. 18566-70 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  100. Published

    The effect of L. acidophilus NCFM intake on insulin sensitivity and gut microbiota: a randomized placebo-controlled trial

    Larsen, Nadja, Andreasen, A. S., Pedersen-Skovsgaard, T., Møller, K., van den Berg, F. W. J., Abu Al-Soud, W. M. A. F., Sørensen, Søren Johannes, Hansen, Lars Hestbjerg, Nielsen, Dennis Sandris, Vogensen, Finn Kvist, Pedersen, Bente Klarlund & Jakobsen, M., Sep 2010.

    Research output: Contribution to conference › Conference abstract for conference › Research

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