Microbiology

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  1. Published

    Functional groups of bacteria on decomposing ash litter.

    Struwe, Sten & Kjøller, Annelise Helene, 1985, In: Pedobiologia. 28, 6, p. 367-376 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  2. Published

    Functional groups of microfungi on decomposing ash litter

    Kjøller, Annelise Helene & Struwe, Sten, 1987, In: Pedobiologia. 30, 3, p. 151-159 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Fungal accumulation of metals from building materials during brown rot wood decay

    Hastrup, A. C. S., Jensen, B. & Jellison, J., 2014, In: Archives of Microbiology. 196, 8, p. 565-574 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Fungi and bacteria in the beds of rural and urban infants correlate with later risk of atopic diseases

    Lehtimäki, J., Gupta, S., Hjelmsø, M., Shah, S., Thorsen, Jonathan Jan Ilve, Rasmussen, Morten Arendt, Soverini, M., Li, Xuan Ji, Russel, J., Trivedi, Urvish, Brix, S., Bønnelykke, Klaus, Chawes, Bo Lund Krogsgaard, Bisgaard, H., Sørensen, Søren Johannes & Stokholm, Jakob, 2023, In: Clinical and Experimental Allergy. 53, 12, p. 1268-1278 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    GENETIC AND MORPHOLOGICAL VARIATION OF POPULATIONS BELONGING TO THE BULINUS TRUNCATUS/TROPICUS COMPLEX (GASTROPODA; PLANORBIDAE) IN SOUTH WESTERN ZIMBABWE

    Mukaratirwa, S., Kristensen, T. K., Siegismund, Hans Redlef & Chandiwana, S. K., 1998, In: Journal of Molluscan Studies. 64, Part 4, p. 435-446

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Genera Orchidacearum: Epidendroideae (Part two)

    Pridgeon, A. M. (ed.), Cribb, P. J. (ed.), Chase, M. W. & Rasmussen, Finn N. (ed.), 2009, Oxford: Oxford University Press. 586 p.

    Research output: Book/Report › Book › Research › peer-review

  7. Published

    Genes under positive selection in Escherichia coli

    Petersen, L., Bollback, J. P., Dimmic, M., Hubisz, M. & Nielsen, Rasmus, 2007, In: Genome Research. 17, 9, p. 1336-43 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Genetic Characterizations of IncX-plasmids of the Enterobacteriaceae

    Norman, A., 2009, Biologisk Institut: Museum Tusculanum.

    Research output: Book/Report › Ph.D. thesis › Research

  9. Published

    Genetic barcoding of dark-spored myxomycetes (Amoebozoa): identification, evaluation and application of a sequence similarity threshold for species differentiation in NGS studies

    Dahl, M. B., Brejnrod, A. D., Unterseher, M., Hoppe, T., Feng, Y., Novozhilov, Y., Sørensen, Søren Johannes & Schnittler, M., Mar 2018, In: Molecular Ecology Resources. 18, 2, p. 306-318 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Genetic labelling and application of the isoproturonmineralizing Sphingomonas sp. strain SRS2 in soil and rhizosphere

    Kristensen, K. E., Jacobsen, C. S., Hansen, Lars Hestbjerg, Aamand, J., Morgan, J. A. W., Sternberg, C. & Sørensen, S. R., 2006, In: Letters in Applied Microbiology. 43, 3, p. 280-286 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Genetic subspecies diversity of the chimpanzee CD4 virus-receptor gene

    Hvilsom, C., Carlsen, F., Siegismund, Hans Redlef, Corbet, S., Nerrienet, E. & Fomsgaard, A., 2008, In: Genomics. 92, 5, p. 322-328 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Genome binning of viral entities from bulk metagenomics data

    Johansen, Joachim, Plichta, D. R., Nissen, J. N., Jespersen, Marie Louise, Shah, S. A., Deng, Ling, Stokholm, Jakob, Bisgaard, H., Nielsen, Dennis Sandris, Sørensen, Søren Johannes & Rasmussen, Simon, 2022, In: Nature Communications. 13, 12 p., 965.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Genome sequence of Arthrobacter antarcticus strain W2, isolated from a slaughterhouse

    Herschend, J., Raghupathi, P. K., Røder, Henriette Lyng, Sørensen, Søren Johannes & Burmølle, Mette, 2016, In: Genome Announcements. 4, 2, 2 p., e00073-16.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Genome sequence of Kocuria palustris strain W4

    Herschend, J., Raghupathi, P. K., Røder, Henriette Lyng, Sørensen, Søren Johannes & Burmølle, Mette, 2016, In: Genome Announcements. 4, 2, 1 p., e00074-16.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Genome sequence of Kocuria varians G6 ssolated from a slaughterhouse in Denmark

    Raghupathi, P. K., Herschend, J., Røder, Henriette Lyng, Sørensen, Søren Johannes & Burmølle, Mette, 2016, In: Genome Announcements. 4, 2, 2 p., e00076-16.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Genome sequence of Psychrobacter cibarius strain W1

    Raghupathi, P. K., Herschend, J., Røder, Henriette Lyng, Sørensen, Søren Johannes & Burmølle, Mette, 2016, In: Genome Announcements. 4, 3, 1 p., e00078-16.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Genome sequence of Leuconostoc mesenteroides subsp. cremoris strain T26, isolated from mesophilic undefined cheese starter

    Pedersen, T. B., Kot, Witold, Hansen, L. H., Sørensen, Søren Johannes, Broadbent, J. R., Vogensen, Finn Kvist & Ardö, Ylva Margareta, 2014, In: Genome Announcements. 2, 3, 1 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Genome sequences of two Leuconostoc pseudomesenteroides strains isolated from Danish dairy starter cultures

    Pedersen, T. B., Kot, Witold, Hansen, L. H., Sørensen, Søren Johannes, Broadbent, J. R., Vogensen, Finn Kvist & Ardö, Ylva Margareta, 2014, In: Genome Announcements. 2, 3, p. 2 e00484-14.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Genome-wide detection of selection and other evolutionary forces

    Xu, Z. & Zhou, R., 2015, Bacterial pangenomics: methods and protocols. Mengoni, A., Galardini, M. & Fondi, M. (eds.). Springer, p. 271-287 17 p. (Methods in Molecular Biology).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  20. Published

    Genome-wide discovery and verification of novel structured RNAs in Plasmodium falciparum

    Mourier, T., Carret, C., Kyes, S., Christodoulou, Z., Gardner, P. P., Jeffares, D. C., Pinches, R., Barrell, B., Berriman, M., Griffiths-Jones, S., Ivens, A., Newbold, C. & Pain, A., 2008, In: Genome Research. 18, 2, p. 281-92 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Genome-wide patterns of nucleotide polymorphism in domesticated rice

    Caicedo, A. L., Williamson, S. H., Hernandez, R. D., Boyko, A., Fledel-Alon, A., York, T. L., Polato, N. R., Olsen, K. M., Nielsen, Rasmus, McCouch, S. R., Bustamante, C. D. & Purugganan, M. D., 2007, In: PLoS Genetics. 3, 9, p. 1745-56 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Genomic and exoproteomic analyses of cold- and alkaline-adapted bacteria reveal an abundance of secreted subtilisin-like proteases

    Lylloff, J. E., Hansen, L. B. S., Jepsen, M., Sanggaard, K. W., Vester, J. K., Enghild, J. J., Sørensen, Søren Johannes, Stougaard, P. & Glaring, M. A., 2016, In: Microbial Biotechnology. 9, 2, p. 245-256 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Genotype and SNP calling from next-generation sequencing data

    Nielsen, Rasmus, Paul, J. S., Albrechtsen, Anders & Song, Y. S., 2011, In: Nature Reviews. Genetics. 12, 6, p. 443-451 9 p.

    Research output: Contribution to journal › Review › Research › peer-review

  24. Published

    Genotypic variations and interspecific interactions modify gene expression and biofilm formation of Xanthomonas retroflexus

    Jacquiod, S., Olsen, N. M. C., Blouin, M., Røder, Henriette Lyng & Burmølle, Mette, 2023, In: Environmental Microbiology. 25, 12, 3225-3238.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Genus-specific protein binding to the large clusters of DNA repeats (short regularly spaced repeats) present in Sulfolobus genomes

    Peng, Xu, Brügger, K., Shen, B., Chen, L., She, Q. & Garrett, Roger Antony, 2003, In: Journal of Bacteriology. 185, 8, p. 2410-7 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    Geologically ancient DNA: fact or artefact?

    Hebsgaard, M. B., Phillips, M. J. & Willerslev, Eske, 2005, In: Trends in Microbiology. 13, 5, p. 212-220

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    Getting the best out of long-wavelength X-rays: de novo chlorine/sulfur SAD phasing of a structural protein from ATV

    Goulet, A., Vestergaard, G. A., Felisberto-Rodrigues, C., Campanacci, V., Garrett, Roger Antony, Cambillau, C. & Ortiz-Lombardía, M., 2010, In: Acta Crystallographica. Section D: Biological Crystallography. 66, Pt 3, p. 304-308 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    Glossary

    Rasmussen, Finn N., 2005, Genera Orchidacearum. Pridgeon, A. M., Cribb, P., Chase, M. W. & Rasmussen, F. N. (eds.). Oxford: Oxford University Press, Vol. 4. p. 627-628

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research

  29. Published

    Green fluorescent protein (GFP) leakage from microbial biosensors provides useful information for the evaluation of the scale-down effect

    Delvigne, F., Brognaux, A., Francis, F., Twizere, J., Gorret, N., Sørensen, Søren Johannes & Thonart, P., 2011, In: Biotechnology Journal. 6, 8, p. 968-978 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    Group-specific PCR primers to amplify 24S α-subunit rRNA genes from Kinetoplastida (Protozoa) used in denaturing gradient gel electrophoresis

    Rasmussen, L. D., Ekelund, Flemming, Hansen, Lars Hestbjerg, Sørensen, Søren Johannes & Johnsen, K., 2001, In: Microbial Ecology. 42, 2, p. 109-115

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    Growth and molting in epizoic pedunculate barnacles genus Octolasmis (Crustacea: Thecostraca: Cirripedia: Thoracica).

    Høeg, Jens Thorvald, Glenner, Henrik & Høeg, Jens Thorvald, 2004, In: Journal of Morphology. 260, 2, p. 154-64 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    Growth rate of rhizosphere bacteria measured directly by the tritiated thymidine incorporation technique

    Christensen, Henrik, Jensen, Dan Funck & Kjøller, Annelise Helene, 1989, In: Soil Biology and Biochemistry. 21, 1, p. 113-117

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    Gunnar Seidenfaden and the Thai orchid collection in Copenhagen, Denmark

    Sterll, M. & Rasmussen, Finn N., 1988, In: Orchids. 57, 11

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    Gunnar Seidenfaden's contributions to orchidology and conception of taxonomy and botanical science

    Rasmussen, Finn N., 2008, The Fourth International ConferenceonThe Comparative Biology of the MonocotyledonsThe Fifth International Symposium on Grass Systematics and Evolution H.C. Ørsted Institute, University of Copenhagen11-15 August 2008 · Copenhagen, Denmark. Museum Tusculanum, p. 50-50 1 p.

    Research output: Chapter in Book/Report/Conference proceeding › Conference abstract in proceedings › Research

  35. Published

    Gut microbiota composition is correlated to grid floor induced stress and behavior in the BALB/c mouse

    Bendtsen, K. M. B., Krych, Lukasz, Sørensen, Dorte Bratbo, Pang, W., Nielsen, Dennis Sandris, Josefsen, K., Hansen, Lars Hestbjerg, Sørensen, Søren Johannes & Hansen, Axel Kornerup, 2012, In: P L o S One. 7, 10, 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    Gut microbiota in human adults with type 2 diabetes differs from non-diabetic adults

    Larsen, Nadja, Vogensen, Finn Kvist, van der Berg, Franciscus Winfried J, Nielsen, Dennis Sandris, Andreasen, Anne Sofie, Pedersen, Bente Klarlund, Abu Al-Soud, W. M. A. F., Sørensen, Søren Johannes, Hansen, Lars Hestbjerg & Jakobsen, M., 2010, In: PLoS ONE. 5, 2, p. e9085 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    Heavy metal exposure causes changes in the metabolic health-associated gut microbiome and metabolites

    Li, Xuan Ji, Brejnrod, A. D., Ernst, M., Rykær, M., Herschend, J., Olsen, N. M. C., Dorrestein, P. C., Rensing, C. & Sørensen, Søren Johannes, 2019, In: Environment International. 126, p. 454-467 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    Herbivory and dominance shifts among exotic and congeneric native plant species during plant community establishment

    Engelkes, T., Meisner, A., Morriën, E., Kostenko, O., van der Putten, W. H. & Macel, M., 2016, In: Oecologia. 180, 2, p. 507-517 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    Herbivory by the wevil Strophosoma melanogrammum, causes severalfold increase in emission of monoterpenes from young Norway spruce (Picea abies)

    Priemé, Anders, Knudsen, T. B., Glasius, M. & Christensen, Søren, 2000, In: Atmospheric Environment. 34, p. 711-718

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    Heterogeneity in recombinant protein production

    Schalén, M., Johanson, T., Neves Lundin, A. L., Sørensen, Søren Johannes & Lantz, A. E., 2012, In: New Biotechnology. 29, Supplement, 0, p. S78 1 p.

    Research output: Contribution to journal › Conference abstract in journal › Research › peer-review

  41. Published

    High cell densities favor lysogeny: induction of an H20 prophage is repressed by quorum sensing and enhances biofilm formation in Vibrio anguillarum

    Tan, D., Hansen, Mads Frederik, de Carvalho, L. N., Røder, Henriette Lyng, Burmølle, Mette, Middelboe, Mathias & Svenningsen, Sine Lo, 2020, In: The ISME Journal. 14, 7, p. 1731-1742 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    High frequencies of antibiotic resistance genes in infants' meconium and early fecal samples

    Gosalbes, M. J., Vallès, Y., Jiménez-Hernández, N., Balle, C., Riva, P., Miravet-Verde, S., de Vries, Lisbeth Elvira, Llop, S., Agersø, Y., Sørensen, Søren Johannes, Ballester, F. & Francino, M. P., 2016, In: Journal of Developmental Origins of Health and Disease. 7, 01, p. 35-44 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    High nitrogen-fixing rates associated with ground-covering mosses in a tropical mountain cloud forest will decrease drastically in a future climate

    Permin, Aya Tora Foged, Horwath, A. B., Metcalfe, D. B., Priemé, Anders & Rousk, Kathrin, 2022, In: Functional Ecology. 36, 7, p. 1772-1781 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    High prevalence of biofilm synergy among bacterial soil isolates in cocultures indicates bacterial interspecific cooperation

    Ren, D., Madsen, Jonas Stenløkke, Sørensen, Søren Johannes & Burmølle, Mette, 11 Jan 2015, In: ISME Journal. 9, p. 81-89 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    High robustness of soil bacteria and funghi to multifactorial climate change manipulations

    Bergmark, L., Haugwitz-Hardenberg-Reventlow, M. S., Sørensen, Søren Johannes & Priemé, Anders, 2012.

    Research output: Contribution to conference › Conference abstract for conference › Research

  46. Published

    High throughput sequencing applied to analyze microbial communities in different animal models with an interpretation in a human health perspectives

    Li, Xuan Ji, 2019, Department of Biology, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  47. Published

    High variation and very low differentiation in wide ranging plains zebra (Equus quagga): insights from mtDNA and microsatellites

    Lorenzen, Eline, Arctander, P. & Siegismund, Hans Redlef, 2008, In: Molecular Ecology. 17, 12, p. 2812-2824 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    High-resolution melt analysis for rapid comparison of bacterial community compositions

    Hjelmsø, M. H., Hansen, Lars Hestbjerg, Bælum, J., Feld, L., Holben, W. E. & Jacobsen, C. S., 2014, In: Applied and Environmental Microbiology. 80, 12, p. 3568-3575 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    High-resolution single-molecule long-fragment rRNA gene amplicon sequencing of bacterial and eukaryotic microbial communities

    Fang, Chao, Sun, X., Fan, F., Zhang, X., Wang, O., Zheng, Haotian, Peng, Z., Luo, X., CHEN, Ao, Zhang, W., Drmanac, R., Peters, B. A., Song, Z. & Kristiansen, Karsten, 2023, In: Cell Reports Methods. 3, 3, 16 p., 100437.

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    High-throughput screening alternative to crystal violet biofilm assay combining fluorescence quantification and imaging

    Amador Hierro, Cristina Isabel, Stannius, R. O., Røder, Henriette Lyng & Burmølle, Mette, 2021, In: Journal of Microbiological Methods. 190, 5 p., 106343.

    Research output: Contribution to journal › Letter › Research › peer-review

  51. Published

    High-throughput screening of multispecies biofilm formation and quantitative PCR-based assessment of individual species proportions, useful for exploring interspecific bacterial interactions

    Ren, D., Madsen, Jonas Stenløkke, de la Cruz Perera, C. I., Bergmark, L., Sørensen, Søren Johannes & Burmølle, Mette, 2014, In: Microbial Ecology. 68, 1, p. 146-154 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  52. Published

    Historical mammal extinction on Christmas Island (Indian Ocean) correlates with introduced infectious disease

    Wyatt, K. B., Campos, P. F., Gilbert, M Thomas P, Kolokotronis, S., Hynes, W. H., DeSalle, R., Daszak, P., MacPhee, R. D. E. & Greenwood, A. D., 2008, In: PLoS ONE. 3, 11, p. e3602

    Research output: Contribution to journal › Journal article › Research › peer-review

  53. Published

    Horizontal Gene Transfer of an IncP1 Plasmid to Soil Bacterial Community Introduced by Escherichia coli through Manure Amendment in Soil Microcosms

    Macedo, G., Olesen, Asmus Kalckar, Maccario, Lorrie, Leal, L. H., v. d. Maas, P., Heederik, D., Mevius, D., Sørensen, Søren Johannes & Schmitt, H., 2022, In: Environmental Science & Technology. 56, 16, p. 11398-11408 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  54. Published

    Horizontal Transfer of Cyclic di-GMP Associated Genes: Theoretical Underpinnings and Future Perspectives

    Madsen, Jonas Stenløkke, 2020, Microbial Cyclic Di-Nucleotide Signaling. Chou, S-H., Guiliani, N., Lee, V. T. & Römling, U. (eds.). Springer, p. 641-652 12 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  55. Published

    Horizontal transmission of a multidrug-resistant IncN plasmid isolated from urban wastewater

    Yu, Z., Wang, Q., Pinilla Redondo, Rafael, Madsen, Jonas Stenløkke, Clasen, K. A. D., Ananbeh, H., Olesen, Asmus Kalckar, Gong, Zhuang, Yang, Nan, Dechesne, A., Smets, B., Nesme, Joseph & Sørensen, Søren Johannes, 2024, In: Ecotoxicology and Environmental Safety. 271, 12 p., 115971.

    Research output: Contribution to journal › Journal article › Research › peer-review

  56. Published

    Host-specific microbial communities in three sympatric North Sea sponges

    Naim, M. A., Morillo, J. A., Sørensen, Søren Johannes, Abu Al-Soud, W., Smidt, H. & Sipkema, D., 2014, In: F E M S Microbiology Ecology. 90, 2, p. 390-403 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  57. Published

    Hot spots of N2O emission move with the seasonally mobile oxic-anoxic interface in drained organic soils

    Lee, A. J., Winther, M. N., Priemé, Anders, Blunier, Thomas & Christensen, Søren Tvorup, 1 Dec 2017, In: Soil Biology & Biochemistry. 115, p. 178-186 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  58. Published

    How Microbial Aggregates Protect against Nanoparticle Toxicity

    Tang, J., Wu, Y., Esquivel-Elizondo, S., Sørensen, Søren Johannes & Rittmann, B. E., 2018, In: Trends in Biotechnology. 36, 11, p. 1171-1182

    Research output: Contribution to journal › Review › Research › peer-review

  59. Published

    Human Milk Fortification with Bovine Colostrum Is Superior to Formula-Based Fortifiers to Prevent Gut Dysfunction, Necrotizing Enterocolitis, and Systemic Infection in Preterm Pigs

    Sun, Jing, Li, Y., Pan, X., Nguyen, Duc Ninh, Brunse, Anders, Bojesen, Anders Miki, Rudloff, S., Mortensen, M. S., Burrin, D. G. & Sangild, Per Torp, 2019, In: Journal of Parenteral and Enteral Nutrition. 43, 2, p. 252-262

    Research output: Contribution to journal › Journal article › Research › peer-review

  60. Published

    Human milk oligosaccharide effects on intestinal function and inflammation after preterm birth in pigs

    Rasmussen, S. O., Martin, L., Østergaard, M. V., Rudloff, S., Roggenbuck, M., Nguyen, Duc Ninh, Sangild, Per Torp & Bering, S. B., 2017, In: The Journal of Nutritional Biochemistry. 40, p. 141-154 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  61. Published

    Human origins and ancient human DNA

    Cooper, A., Rambaut, A., Macaulay, V., Willerslev, Eske, Hansen, Anders Johannes & Stringer, C., 2001, In: Science. 292, 5522, p. 1655-56

    Research output: Contribution to journal › Comment/debate › Research

  62. Published

    Hundreds of circular novel plasmids and DNA elements identified in a rat cecum metamobilome

    Jørgensen, T. S., Xu, Z., Hansen, M. A., Sørensen, Søren Johannes & Hansen, L. H., 2014, In: P L o S One. 9, 2, 9 p., e87924.

    Research output: Contribution to journal › Journal article › Research › peer-review

  63. Published

    Hussvamp og Skimmelsvamp: En uønsket gæst

    Hastrup, A. C. S., 2006, København, Denmark: KAB Fonden. 11 p.

    Research output: Book/Report › Report › Communication

  64. Published

    Hvalernes udviklingshistorie

    Steeman, M. E., 2008, In: Naturens Verden. 3, p. 2-11

    Research output: Contribution to journal › Journal article › Research

  65. Published

    Hvor blev mit hus af? Historien om Ægte Hussvamp

    Hastrup, A. C. S., 2005, In: Svampe. p. 47-51 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  66. Published

    Hybridization between subspecies of waterbuck (Kobus ellipsiprymnus) in zones of overlap with limited introgression

    Lorenzen, Eline, Simonsen, Bo Thisted, Kat, P. W., Arctander, P. & Siegismund, Hans Redlef, 2006, In: Molecular Ecology. 15, 12, p. 3787-99 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  67. Published

    Hyperforin accumulates in the translucent glands of Hypericum perforatum.

    Soelberg, Jens, Jørgensen, L. B. & Jäger, A. K., 2007, In: Annals of Botany. 99, 6, p. 1097-1100 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  68. Published

    I Skjoldungen spiste de især fisk og sæler

    Gotfredsen, Anne Birgitte, Nielsen, P. G. & Rosenlund, Knud, 1994, In: Tusaat. 1994, 1-2, p. 46-49

    Research output: Contribution to journal › Journal article › Research

  69. Published

    Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes

    Nielsen, H. B., Almeida, M., Juncker, A., Rasmussen, S., Li, J., Sunagawa, S., Plichta, D. R., Gautier, L., Pedersen, A. G., Le Chatelier, E., Pelletier, E., Bonde, I., Nielsen, T., Manichanh, C., Arumugam, M., Batto, J-M., dos Santos, M. B. Q., Blom, N., Borruel, N., Burgdorf, K. S. & 31 others, Boumezbeur, F., Casellas, F., Doré, J., Dworzynski, P., Guarner, F., Hansen, Torben, Hildebrand, F., Kaas, R. S., Kennedy, S., Kristiansen, Karsten, Kultima, J. R., Léonard, P., Levenez, F., Lund, O., Moumen, B., Le Paslier, D., Pons, N., Pedersen, Oluf Borbye, Prifti, E., Qin, J., Raes, J., Sørensen, Søren Johannes, Tap, J., Tims, S., Ussery, D., Yamada, T., Renault, P., Sicheritz-Pontén, T., Bork, P., Wang, J. & MetaHIT Consortium, M. C., 2014, In: Nature Biotechnology. 32, 8, p. 822–828 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  70. Published

    Identification of Beneficial Microbial Consortia and Bioactive Compounds with Potential as Plant Biostimulants for a Sustainable Agriculture

    Tabacchioni, S., Passato, S., Ambrosino, P., Huang, L., Caldara, M., Cantale, C., Hett, J., Del Fiore, A., Fiore, A., Schlüter, A., Sczyrba, A., Maestri, E., Marmiroli, N., Neuhoff, D., Nesme, J., Sørensen, S. J., Aprea, G., Nobili, C., Presenti, O., Giovannetti, G. & 4 others, Giovannetti, C., Pihlanto, A., Brunori, A. & Bevivino, A., 2021, In: Microorganisms. 9, 2, 23 p., 426.

    Research output: Contribution to journal › Journal article › Research › peer-review

  71. Published

    Identification of genes differentially expressed in testes containing carcinoma in situ

    Høi-Hansen, Christina Engel, Nielsen, J. E., Almstrup, Kristian, Hansen, M. A., Skakkebæk, Niels Erik, Rajpert-DeMeyts, E. & Leffers, H., Jun 2004, In: Molecular Human Reproduction. 10, 6, p. 423-431 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  72. Published

    Identification of the amidase BbdA that initiates biodegradation of the groundwater micropollutant 2,6-dichlorobenzamide (BAM) in Aminobacter sp. MSH1

    T'Syen, J., Tassoni, R., Hansen, Lars Hestbjerg, Sørensen, Søren Johannes, Leroy, B., Sekhar, A., Wattiez, R., De Mot, R. & Springael, D., 2015, In: Environmental Science & Technology (Washington). 49, 19, p. 11703-11713 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  73. Published

    Identifying qualitative effects of different grazing types on below-ground communities and function in a long-term field experiment

    Macdonald, C. A., Crawley, M. J., Wright, D. J., Kuczynski, J., Robinson, L., Knight, R., Abu Al-Soud, W., Sørensen, Søren Johannes, Deng, Y., Zhou, J. & Singh, B. K., 2015, In: Environmental Microbiology. 17, 3, p. 841-854 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  74. Published

    Identifying the core microbial community in the gut of fungus-growing termites

    Otani, S., Mikaelyan, A., Nobre, T., Hansen, Lars Hestbjerg, Koné, N. A., Sørensen, Søren Johannes, Aanen, D. K., Boomsma, Jacobus J., Brune, A. & Poulsen, Michael, 2014, In: Molecular Ecology. 23, 18, p. 4631–4644 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  75. Published

    Impact of Long-Term Organic and Mineral Fertilization on Rhizosphere Metabolites, Root–Microbial Interactions and Plant Health of Lettuce

    Windisch, S., Sommermann, L., Babin, D., Chowdhury, S. P., Grosch, R., Moradtalab, N., Walker, F., Höglinger, B., El-Hasan, A., Armbruster, W., Nesme, Joseph, Sørensen, Søren Johannes, Schellenberg, I., Geistlinger, J., Smalla, K., Rothballer, M., Ludewig, U. & Neumann, G., 2021, In: Frontiers in Microbiology. 11, 26 p., 597745.

    Research output: Contribution to journal › Journal article › Research › peer-review

  76. Published

    Impact of Sample Type and DNA Isolation Procedure on Genomic Inference of Microbiome Composition

    Knudsen, B. E., Bergmark, L., Munk, P., Lukjancenko, O., Priemé, Anders, Aarestrup, F. M. & Pamp, S. J., 2016, In: mSystems. 1, 5, p. 1-15 e00095-16.

    Research output: Contribution to journal › Journal article › Research › peer-review

  77. Published

    Impact of Tellurite on the Metabolism of Paenibacillus pabuli AL109b With Flagellin Production Explaining High Reduction Capacity

    Farias, P., Francisco, R., Maccario, Lorrie, Herschend, J., Piedade, A. P., Sørensen, Søren Johannes & Morais, P. V., 2021, In: Frontiers in Microbiology. 12, 15 p., 718963.

    Research output: Contribution to journal › Journal article › Research › peer-review

  78. Published

    Impact of free living protozoa and bacterial interactions on multispecies biofilm

    Raghupathi, P. K., 2018, Department of Biology, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  79. Published

    Impact of intensive lifestyle intervention on gut microbiota composition in type 2 diabetes: a post-hoc analysis of a randomized clinical trial

    Wei, S., Brejnrod, A. D., Trivedi, Urvish, Mortensen, M. S., Johansen, M. Y., Karstoft, Kristian, Vaag, A. A., Ried-Larsen, M. & Sørensen, Søren Johannes, 2022, In: Gut Microbes. 14, 1, 15 p., 2005407.

    Research output: Contribution to journal › Journal article › Research › peer-review

  80. Published

    Impact of long-term agricultural management practices on soil prokaryotic communities

    Babin, D., Deubel, A., Jacquiod, S. J. A., Sørensen, Søren Johannes, Geistlinger, J., Grosch, R. & Smalla, K., 2019, In: Soil Biology & Biochemistry. 129, p. 17-28

    Research output: Contribution to journal › Journal article › Research › peer-review

  81. Published

    Impact of long-term diesel contamination on soil microbial community structure

    Sutton, N., Maphosa, F., Morillo, J., Abu Al-Soud, W., Langenhoff, A., Grotenhuis, T., Rijnaarts, H. & Smidt, H., 2013, In: Applied and Environmental Microbiology. 79, 2, p. 619-630 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  82. Published

    Impacts of climate change on terrestrial ecosystem functioning: an overview

    Beier, C., Ambus, P., Arndal, M. F., Christensen, S., Holmstrup, M., Larsen, K. S., Michelsen, A., Mikkelsen, T. N., Priemé, Anders, Schmidt, Inger Kappel & Pilegaard, K., 2015, Kgs. Lyngby: DTU. 55 p.

    Research output: Book/Report › Report › Research

  83. Published

    Importance of microbial communities at the root-soil interface for extracellular polymeric substances and soil aggregation in semiarid grasslands

    Bettermann, A., Zethof, J. H. T., Babin, D., Cammeraat, E. L. H., Solé-Benet, A., Lázaro, R., Luna, L., Nesme, Joseph, Sørensen, Søren Johannes, Kalbitz, K., Smalla, K. & Vogel, C., 2021, In: Soil Biology & Biochemistry. 159, 14 p., 108301.

    Research output: Contribution to journal › Journal article › Research › peer-review

  84. Published

    Importance of substrate quality and clay content on microbial extracellular polymeric substances production and aggregate stability in soils

    Olagoke, F. K., Bettermann, A., Nguyen, P. T. B., Redmile-Gordon, M., Babin, D., Smalla, K., Nesme, Joseph, Sørensen, Søren Johannes, Kalbitz, K. & Vogel, C., 2022, In: Biology and Fertility of Soils. 58, 4, p. 435-457 23 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  85. Published

    Improvement of pesticide removal in contaminated media using aqueous extracts from contaminated biopurification systems

    Romero, I. A., van Dillewijn, P., Nesme, Joseph, Sørensen, Søren Johannes & Romero, E., 2019, In: Science of the Total Environment. 691, p. 749-759 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  86. Published

    In Situ PCR - a tool for studyin plant molecular development

    Skipper, M., Frederiksen, S. E. & Johansen, B. B., 2000.

    Research output: Contribution to conference › Poster › Research

  87. Published

    In Situ PCR on Plant Material with Sub-Cellular Resolution

    Johansen, B. B., 1997, In: Annals of Botany. 80 (5), p. 697-700

    Research output: Contribution to journal › Journal article › Research › peer-review

  88. Published

    Inbreeding depression in the partially self-incompatible endemic plant species Scalesia affinis (Asteraceae) from Galápagos islands

    Nielsen, Lene Rostgaard, Siegismund, Hans Redlef, Hansen, T. & Hansen, T. M., 2007, In: Evolutionary Ecology. 21, 1, p. 1-12 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  89. Published

    IncHI1A plasmids potentially facilitate horizontal flow of antibiotic resistance genes to pathogens in microbial communities of urban residential sewage

    Olesen, Asmus Kalckar, Pinilla Redondo, Rafael, Hansen, Mads Frederik, Russel, J., Dechesne, A., Smets, B. F., Madsen, Jonas Stenløkke, Nesme, Joseph & Sørensen, Søren Johannes, 2022, In: Molecular Ecology. 31, 5, p. 1595-1608

    Research output: Contribution to journal › Journal article › Research › peer-review

  90. Published

    Incompatibility in Dendrobium

    Johansen, B. B., 1990, In: Botanical Journal of the Linnean Society. 103, p. 165-196

    Research output: Contribution to journal › Journal article › Research › peer-review

  91. Published

    Induced metamorphosis in crustacean y-larvae: towards a solution to a 100-year-old riddle

    Glenner, Henrik, Høeg, Jens Thorvald, Grygier, M. J. & Fujita, Y., 2008, In: BMC Biology. 6, 21, p. 1-6 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  92. Published

    Infant airway microbiota and topical immune perturbations in the origins of childhood asthma

    Thorsen, Jonathan Jan Ilve, Rasmussen, Morten Arendt, Waage, J., Mortensen, M., Brejnrod, A., Bønnelykke, Klaus, Chawes, Bo Lund Krogsgaard, Brix, S., Sørensen, Søren Johannes, Stokholm, Jakob & Bisgaard, H., 2019, In: Nature Communications. 10, 8 p., 5001.

    Research output: Contribution to journal › Journal article › Research › peer-review

  93. Published

    Influence of sewage sludge stabilization method on microbial community and the abundance of antibiotic resistance genes

    Major, N., Jechalke, S., Nesme, Joseph, Goreta Ban, S., Černe, M., Sørensen, Søren Johannes, Ban, D., Grosch, R., Schikora, A. & Schierstaedt, J., 2022, In: Waste Management. 154, p. 126-135 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  94. Published

    Inhibitors of bacterial immune systems: discovery, mechanisms and applications

    Mayo-Muñoz, D., Pinilla Redondo, Rafael, Camara, Sarah, Birkholz, N. & Fineran, P. C., 2024, In: Nature Reviews Genetics. 25, 4, p. 237-254 18 p.

    Research output: Contribution to journal › Review › Research › peer-review

  95. Published

    Insight from the draft genome of Dietzia cinnamea P4 reveals mechanisms of survival in complex tropical soil habitats and biotechnology potential

    Procópio, L., Alvarez, V. M., Jurelevicius, D. A., Hansen, Lars Hestbjerg, Sørensen, Søren Johannes, Cardoso, J. S., Pádula, M., Leitao, Á. C., Seldin, L. & van Elsas, J. D., 2012, In: Antonie van Leeuwenhoek: Journal of Microbiology. 101, 2, p. 289-302 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  96. Published

    Insights into Bacterial Milk Spoilage with Particular Emphasis on the Roles of Heat-Stable Enzymes, Biofilms, and Quorum Sensing

    Yuan, L., Sadiq, F. A., Burmølle, Mette, Liu, T. & He, G., 2018, In: Journal of Food Protection. 81, 10, p. 1651-1660

    Research output: Contribution to journal › Review › Research › peer-review

  97. Published

    Insights into psychrotrophic bacteria in raw milk: A review

    Yuan, L., Sadiq, F. A., Burmølle, Mette, Wang, N. & He, G., 2019, In: Journal of Food Protection. 82, 7, p. 1148-1159 12 p.

    Research output: Contribution to journal › Review › Research › peer-review

  98. Published

    Insights into the circular: The cryptic plasmidome and its derived antibiotic resistome in the urban water systems

    Yu, Z., He, Wanli, Klincke, F., Madsen, Jonas Stenløkke, Kot, Witold, Hansen, Lars Hestbjerg, Quintela-Baluja, M., Balboa, S., Dechesne, A., Smets, B., Nesme, Joseph & Sørensen, Søren Johannes, 2024, In: Environment International. 183, 12 p., 108351.

    Research output: Contribution to journal › Journal article › Research › peer-review

  99. Published

    Insights into the processes behind the contamination of degraded human teeth and bone samples with exogenous sources of DNA

    Gilbert, M Thomas P, Hansen, Anders Johannes, Willerslev, Eske, Turner-Walker, G. & Collins, M., 2006, In: International Journal of Osteoarchaeology. 16, 2, p. 156-164

    Research output: Contribution to journal › Journal article › Research › peer-review

  100. Published

    Integration within the Felsenstein equation for improved Markov chain Monte Carlo methods in population genetics

    Hey, J. & Nielsen, Rasmus, 2007, In: Proceedings of the National Academy of Science of the United States of America. 104, 8, p. 2785-90 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

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