- Published
Interactions in Biofilm Communities
Olsen, N. M. C., 2019, Department of Biology, Faculty of Science, University of Copenhagen. 123 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
Interactions in Microbial Community Assembly - from Patterns to Processes and Back
Russel, J., 2018, Department of Biology, Faculty of Science, University of Copenhagen.Research output: Book/Report › Ph.D. thesis › Research
- Published
Interactions in multispecies biofilms: do they actually matter?
Burmølle, Mette, Ren, D., Bjarnsholt, Thomas & Sørensen, Søren Johannes, 2014, In: Trends in Microbiology. 22, 2, p. 84-91 8 p.Research output: Contribution to journal › Review › Research › peer-review
- Published
Interphylum dissemination of NDM-5-positive plasmids in hospital wastewater from Fuzhou, China: a single-centre, culture-independent, plasmid transmission study
Yang, Q. E., Ma, X., Zeng, L., Wang, Q., Li, M., Teng, L., He, M., Liu, C., Zhao, M., Wang, M., Hui, D., Madsen, Jonas Stenløkke, Liao, H., Walsh, T. R. & Zhou, S., 2024, In: The Lancet Microbe. 5, 1, p. e13-e23 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Interplay of Bacterial Interactions and Spatial Organisation in Multispecies Biofilms
Liu, W., 2017, Department of Biology, Faculty of Science, University of Copenhagen.Research output: Book/Report › Ph.D. thesis › Research
- Published
Interspecies interactions in dairy biofilms drive community structure and response against cleaning and disinfection
Sadiq, F. A., De Reu, K., Yang, Nan, Burmølle, Mette & Heyndrickx, M., 2024, In: Biofilm. 7, 13 p., 100195.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Interspecies interactions reduce selection for a biofilm-optimized variant in a four-species biofilm model
Røder, Henriette Lyng, Liu, W., Sørensen, Søren Johannes, Madsen, Jonas Stenløkke & Burmølle, Mette, 2019, In: Environmental Microbiology Reports. 11, 6, p. 835-839 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Interspecies interactions result in enhanced biofilm formation by co-cultures of bacteria isolated from a food processing environment
Røder, Henriette Lyng, Raghupathi, P. K., Herschend, J., Brejnrod, A. D., Knoechel, Susanne, Sørensen, Søren Johannes & Burmølle, Mette, 2015, In: Food Microbiology. 51, p. 18-24 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Interspecies variation in biofilm-forming capacity of psychrotrophic bacterial isolates from Chinese raw milk
Yuan, L., Burmølle, Mette, Sadiq, F. A., Wang, N. & He, G., 2018, In: Food Control. 91, p. 47-57 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Interspecific bacterial interactions are reflected in multispecies biofilm spatial organization
Liu, W., Røder, Henriette Lyng, Madsen, Jonas Stenløkke, Bjarnsholt, Thomas, Sørensen, Søren Johannes & Burmølle, Mette, 2016, In: Frontiers in Microbiology. 7, 8 p., 1366.Research output: Contribution to journal › Review › Research › peer-review
- Published
Interspecific differentiation and hybridization in vanilla species (Orchidaceae)
Nielsen, Lene Rostgaard & Siegismund, Hans Redlef, 1999, In: Heredity. 83, p. 560-7 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Interspecific interactions facilitate keystone species in a multispecies biofilm that promotes plant growth
Yang, Nan, Røder, Henriette Lyng, Wicaksono, W. A., Wassermann, B., Russel, J., Li, Xuan Ji, Nesme, Joseph, Berg, G., Sørensen, Søren Johannes & Burmølle, Mette, 2024, In: The ISME Journal. 18, 1, 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Interspecific interactions in dual-species biofilms of soil bacteria: effects of fertilization practices
Sun, X., Cai, P., Sørensen, Søren Johannes, Mortimer, M., Gao, C., Huang, Q., Wang, Y., Lin, X., Wu, Y., Zhu, D. & Chen, R., 2020, In: Journal of Soils and Sediments. 20, 3, p. 1494-1501 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Intra- and inter-field diversity of 2,4-dichlorophenoxyacetic acid-degradative plasmids and their tfd catabolic genes in rice fields of the Mekong delta in Vietnam
Nguyen, T. P. O., Hansen, M. A., Hansen, Lars Hestbjerg, Horemans, B., Sørensen, Søren Johannes, De Mot, R. & Springael, D., 2019, In: FEMS Microbiology Ecology. 95, 1, p. 1-11 fiy214.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Intrapopulation and Interpopulation Genetic Variation ofQuercus in Denmark in Denmark
Siegismund, Hans Redlef & Jensen, J. S., 2001, In: Scandinavian Journal of Forest Research. 16, 2, p. 103-116Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Intraspecific phylogenetic analysis of Siberian woolly mammoths using complete mitochondrial genomes
Gilbert, M. T. P., Drautz, D. I., Lesk, A. M., Ho, S. Y. W., Qi, J., Ratan, A., Hsu, C-H., Sher, A., Dalén, L., Götherström, A., Tomsho, L. P., Rendulic, S., Packard, M., Campos, P. F., Kuznetsova, T. V., Shidlovskiy, F., Tikhonov, A., Willerslev, E., Iacumin, P., Buigues, B. & 13 others, , 2008, In: Proceedings of the National Academy of Science of the United States of America. 105, 24, p. 8327-32 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Introgression between oilseed rape (Brassica napus L.) and its weedy relative B. rapa L. in a natural population
Hansen, L. B., Siegismund, Hans Redlef & Jørgensen, R. B., 2001, In: Genetic Resources and Crop Evolution. 48, 6, p. 621–627Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Invasive Acacia longifolia induce changes in the microbial catabolic diversity of sand dunes
Marchante, E., Kjøller, A., Struwe, Sten & Freitas, H., 2008, In: Soil Biology & Biochemistry. 40, 10, p. 2563-2568 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Investigating the diversity of Pseudomonas spp. in soil using culture dependent and independent techniques
Li, L., Abu Al-Soud, W., Bergmark, L., Riber, Leise, Hansen, Lars Hestbjerg, Magid, Jakob & Sørensen, Søren Johannes, 2013, In: Current Microbiology. 67, 4, p. 423-430 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Investigation of diversity of plasmids carrying the blaTEM-52 gene
Bielak, E. M., Bergenholtz, R. D., Jørgensen, M. S., Sørensen, Søren Johannes, Hansen, Lars Hestbjerg & Hasman, H., 2011, In: Journal of Antimicrobial Chemotherapy. 66, 11, p. 2465-74 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Investigation of prokaryotic diversity in an urban waste field trial by high throughput sequencing
Poulsen, P. H. B., Abu Al-Soud, W., Hansen, Lars Hestbjerg, Magid, Jakob & Sørensen, Søren Johannes, 2009. 1 p.Research output: Contribution to conference › Poster › Research
- Published
Investigation of prokaryotic diversity in an urban waste field trial by high throughput sequencing
Poulsen, P. H. B., Abu Al-Soud, W., Hansen, Lars Hestbjerg & Sørensen, Søren Johannes, 2009. 1 p.Research output: Contribution to conference › Conference abstract for conference › Research
- Published
Investigation of the bacteriophage community in induced lysates of undefined mesophilic mixed-strain DL-cultures using classical and metagenomic approaches
Muhammed, Musemma Kedir, Olsen, M. L., Kot, Witold, Neve, H., Castro Mejia, J. L., Janzen, T., Hansen, L. H., Nielsen, Dennis Sandris, Sørensen, Søren Johannes, Heller, K. J. & Vogensen, Finn Kvist, 2018, In: International Journal of Food Microbiology. 272, p. 61-72 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Investigation of the fate and effects of acetyl cedrene on Capitella teleta and sediment bacterial community
Ellegaard-Jensen, L., Selck, H., Priemé, Anders, Salvito, D. & Forbes, V. E., 2010, In: Ecotoxicology. 19, 6, p. 1046-1058 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Investigation of the relationship between lactococcal host cell wall polysaccharide genotype and 936 phage receptor binding protein phylogeny
Mahony, J., Kot, Witold, Murphy, J., Ainsworth, S., Neve, H., Hansen, Lars Hestbjerg, Heller, K. J., Sørensen, Søren Johannes, Hammer, K., Cambillau, C., Vogensen, Finn Kvist & Sinderen, D. V., 2013, In: Applied and Environmental Microbiology. 79, 14, p. 4385-4392 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Iron oxide coated sand (IOS): Scale-up analysis and full-scale application for phosphorus removal from goat farm wastewater
Zhang, R., Wang, L., Lakho, F. H., Yang, X., Depuydt, V., Igodt, W., Le, H. Q., Rousseau, D. P. L. & Van Hulle, S., 2022, In: Separation and Purification Technology. 284, 10 p., 120213.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Isolation of genes involved in ovule development in the orchid Dendrobium thyrsiflorum (Reichb. f.) using expressed sequence tag (EST) analysis
Skipper, M., Pedersen, K. B., Frederiksen, S. E. & Johansen, B. B., 2003.Research output: Contribution to conference › Poster › Research
- Published
Isolation of nucleic acids and cultures from fossil ice and permafrost
Willerslev, Eske, Hansen, Anders Johannes & Poinar, H. N., 2004, In: Trends in Ecology & Evolution. 19, 3, p. 2004 Mar;19(3):141-7Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Isozyme variation within and among geographically isolated populations of Armeria maritima (Mill.) Willd.in Denmark
Weidema, I., Siegismund, Hans Redlef & Philipp, M., 1996, In: Hereditas. 124, p. 121-129Research output: Contribution to journal › Journal article › Research › peer-review
- Published
It is elemental: soil nutrient stoichiometry drives bacterial diversity
Delgado-Baquerizo, M., Reich, P. B., Khachane, A. N., Campbell, C. D., Thomas, N., Freitag, T. E., Abu Al-Soud, W., Sørensen, Søren Johannes, Bardgett, R. D. & Singh, B. K., 2017, In: Environmental Microbiology. 19, 3, p. 1176-1188 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
JAWS: Just Add Water System - A device for detection of nucleic acids in Martian ice caps: In: Proceedings of the First European Workshop on Exo-Astrobiology, 16 - 19 September 2002, Graz, Austria. Ed.: Huguette Lacoste. ESA SP-518, Noordwijk, Netherlands: ESA Publications Division, ISBN , 2002, p. 309 - 312
Hansen, Anders Johannes, Willerslev, Eske, Mørk, S., Hedegaard, M. M., Rønn, R. & Jeffares, D. C., 2002, Proceedings of the Second European Workshop on Exo-Astrobiology. ESA Publications Division, Vol. SP-518.Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
- Published
Jagten på den gode opgave: Identifikation af kriterier og implementering af peer feedback i praksis
Mark Jensen, L., Burmølle, Mette, Johannsen, B. F., Bruun, Jesper & Ellegaard, M., 2020, In: Dansk universitetspædagogisk tidsskrift [online]. 15, 28, p. 16-30 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Kafferbøflens slægtshistorie - Når klimaet dræber
Heller, Rasmus, 2007, In: Naturens Verden. 91, 1, p. 34-40 7 p.Research output: Contribution to journal › Journal article › Research
- Published
Kin discrimination promotes horizontal gene transfer between unrelated strains in Bacillus subtilis
Stefanic, P., Belcijan, K., Kraigher, B., Kostanjšek, R., Nesme, Joseph, Madsen, Jonas Stenløkke, Kovac, J., Sørensen, Søren Johannes, Vos, M. & Mandic-Mulec, I., 2021, In: Nature Communications. 12, 11 p., 3457.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Kinorhyncha from Disko Island, West Greenland. -Redescription of Echinoderes tubilak.
Willerslev, Eske, Sørensen, Martin Vinther & Hansen, A. J., 1996, Arctic Biology Field Course. Hansen, L. B., Kristensen, T. W., Christiansen, M. B. & Schmidt, N. M. (eds.). p. 127-145Research output: Chapter in Book/Report/Conference proceeding › Report chapter › Research
- Published
Knockout of Arabidopsis accelerated-cell-death11 encoding a sphingosine transfer protein causes activation of programmed cell death and defense.
Brodersen, P., Petersen, Morten, Pike, H. M., Olszak, B., Skov, Søren, Odum, N., Jørgensen, L. B., Brown, R. E. & Mundy, J., 2002, In: Genes & Development. 16, 4, p. 490-502 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Konflikter mellem molekylære og morfologiske hvalfylogenier
Steeman, M. E., 2008.Research output: Contribution to conference › Conference abstract for conference › Research
- Published
Kormofyternes Udvikling
Frederiksen, S., Friis, Ib & Rasmussen, Finn N., 1986, Botanisk Laboratorium, københavns Universitet. 74 p.Research output: Book/Report › Compendium/lecture notes › Education
- Published
Large cryoconite aggregates on a Svalbard glacier support a diverse microbial community including ammonia-oxidizing archaea
Zarsky, J. D., Stibal, M., Hodson, A., Sattler, B., Schostag, M., Hansen, Lars Hestbjerg, Jacobsen, C. S. & Psenner, R., 2013, In: Environmental Research Letters. 8, 3, 11 p., 035044.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Large-scale association analyses identify host factors influencing human gut microbiome composition
Kurilshikov, A., Medina-Gomez, C., Bacigalupe, R., Radjabzadeh, D., Wang, J., Demirkan, A., Le Roy, C. I., Raygoza Garay, J. A., Finnicum, C. T., Liu, X., Zhernakova, D. V., Bonder, M. J., Hansen, T. H., Frost, F., Rühlemann, M. C., Turpin, W., Moon, J. Y., Kim, H. N., Lüll, K., Barkan, E. & 84 others, , 2021, In: Nature Genetics. 53, p. 156-165 19 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Large-scale benchmarking reveals false discoveries and count transformation sensitivity in 16S rRNA gene amplicon data analysis methods used in microbiome studies
Thorsen, Jonathan Jan Ilve, Brejnrod, A. D., Mortensen, M. S., Rasmussen, Morten Arendt, Stokholm, Jakob, Abu Al-Soud, W., Sørensen, Søren Johannes, Bisgaard, H. & Waage, J. E., 2016, In: Microbiome. 4, 14 p., 62.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Lead Drives Complex Dynamics of a Conjugative Plasmid in a Bacterial Community
Cyriaque, V., Madsen, Jonas Stenløkke, Fievez, L., Leroy, B., Hansen, Lars Hestbjerg, Bureau, F., Sørensen, Søren Johannes & Wattiez, R., 2021, In: Frontiers in Microbiology. 12, 14 p., 655903.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Legacy Effects on the Recovery of Soil Bacterial Communities from Extreme Temperature Perturbation
Jurburg, S. D., Nunes, I. M., Brejnrod, A. D., Jacquiod, S. J. A., Priemé, Anders, Sørensen, Søren Johannes, Van Elsas, J. D. & Salles, J. F., 2017, In: Frontiers in Microbiology. 8, 13 p., 1832.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
- Published
Limiting the occurrence of antimicrobial resistance through targeted interventions directed at plasmid transfer and stability
Riber, Leise, Charbon, G., Burmølle, Mette, Hansen, Lars Hestbjerg & Sørensen, Søren Johannes, 2011.Research output: Contribution to conference › Poster › Research › peer-review
- Published
Line probe assay for differentiation within Mycobacterium tuberculosis complex. Evaluation on clinical specimens and isolates including Mycobacterium pinnipedii
Kjeldsen, M. K., Bek, D., Rasmussen, E. M., Priemé, Anders & Thomsen, V. Ø., 2009, In: Scandinavian Journal of Infectious Diseases. 41, 9, p. 635-41 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Live and let die: Effects of physiological stress on viability and composition of bacterial communities in complex environments
Neves Lundin, A. L., 2013, Department of Biology, Faculty of Science, University of Copenhagen. 197 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
Living in the cold: Microbial community and function dynamics in Arctic soils at changing temperature
Schostag, M. D., 2017, Department of Biology, Faculty of Science, University of Copenhagen.Research output: Book/Report › Ph.D. thesis › Research
- Published
Local diversity of heathland Cercozoa explored by in-depth sequencing
Harder, Christoffer Bugge, Rønn, Regin, Brejnrod, A. D., Bass, D., Abu Al-Soud, W. & Ekelund, Flemming, 2016, In: The ISME Journal. 10, 10, p. 2488-2497 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Localizing recent adaptive evolution in the human genome
Williamson, S. H., Hubisz, M. J., Clark, A. G., Payseur, B. A., Bustamante, C. D. & Nielsen, Rasmus, 2007, In: PLoS Genetics. 3, 6, p. e90Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Long-Range PCR Reveals the Genetic Cargo of IncP-1 Plasmids in the Complex Microbial Community of an On-Farm Biopurification System Treating Pesticide-Contaminated Wastewater
Dunon, V., Holmsgaard, P. N., Dealtry, S., Lavigne, R., Sørensen, Søren Johannes, Smalla, K., Top, E. M. & Springael, D., 2022, In: Applied and Environmental Microbiology. 88, 3, 17 p., e01648-21.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Long-Term Fertilization Strategy Impacts Rhizoctonia solani–Microbe Interactions in Soil and Rhizosphere and Defense Responses in Lettuce
Sommermann, L., Babin, D., Behr, J. H., Chowdhury, S. P., Sandmann, M., Windisch, S., Neumann, G., Nesme, Joseph, Sørensen, Søren Johannes, Schellenberg, I., Rothballer, M., Geistlinger, J., Smalla, K. & Grosch, R., 2022, In: Microorganisms. 10, 9, 27 p., 1717.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Long-term addition of fertilizer, labile carbon, and fungicide alters the biomass of plant functional groups in a subarctic-alpine community
Haugwitz-Hardenberg-Reventlow, M. S. & Michelsen, Anders, 2011, In: Plant Ecology. 212, 4, p. 715-726 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Long-term and realistic global change manipulations had low impact on diversity of soil biota in temperate heathland
Holmstrup, M., Damgaard, C., Schmidt, Inger Kappel, Arndal, M. F., Beier, Claus, Mikkelsen, T. N., Ambus, Per Lennart, Larsen, Klaus Steenberg, Pilegaard, K., Michelsen, Anders, Andresen, L. C., Haugwitz, M. S., Bergmark, L., Priemé, Anders, Zaitsev, A. S., Georgieva, S., Dam, M., Vestergård, M. & Christensen, Søren, 2017, In: Scientific Reports. 7, 11 p., 41388.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Long-term conservation tillage with reduced nitrogen fertilization intensity can improve winter wheat health via positive plant–microorganism feedback in the rhizosphere
Behr, J. H., Kuhl-Nagel, T., Sommermann, L., Moradtalab, N., Chowdhury, S. P., Schloter, M., Windisch, S., Schellenberg, I., Maccario, Lorrie, Sørensen, Søren Johannes, Rothballer, M., Geistlinger, J., Smalla, K., Ludewig, U., Neumann, G., Grosch, R. & Babin, D., 2024, In: FEMS Microbiology Ecology. 100, 2, 18 p., fiae003.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Long-term immersion of compostable plastics in marine aquarium: Microbial biofilm evolution and polymer degradation
Delacuvellerie, A., Brusselman, A., Cyriaque, V., Benali, S., Moins, S., Raquez, J. M., Gobert, S. & Wattiez, R., 2023, In: Marine Pollution Bulletin. 189, 10 p., 114711.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Long-term industrial metal contamination unexpectedly shaped diversity and activity response of sediment microbiome
Jacquiod, S. J. A., Cyriaque, V., Riber, Leise, Al-Soud, W. A., Gillan, D. C., Wattiez, R. & Sørensen, Søren Johannes, 15 Feb 2018, In: Journal of Hazardous Materials. 344, p. 299-307 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Long-term microbial control of nutrient availability and plant biomass in a subarctic-alpine heath after addition of carbon, fertilizer and fungicide
Haugwitz-Hardenberg-Reventlow, M. S., Michelsen, Anders & Schmidt, Inger Kappel, 2011, In: Soil Biology & Biochemistry. 43, 1, p. 179-187 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Long-term persistence of bacterial DNA
Willerslev, Eske, Hansen, Anders Johannes, Ronn, R., Brand, T. B., Barnes, I., Wiuf, C., Gilichinsky, D., Mitchell, D. & Cooper, A., 2004, In: Current Biology. 14, 1, p. R9-10Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Long-term soil metal exposure impaired temporal variation in microbial metatranscriptomes and enriched active phages
Jacquiod, S., Nunes, I., Brejnrod, A., Hansen, M. A., Holm, Peter Engelund, Johansen, A., Brandt, Kristian Koefoed, Priemé, Anders & Sørensen, Søren Johannes, 2018, In: Microbiome. 6, p. 1-14 223.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Loss of microbial diversity in soils is coincident with reductions in some specialized functions
Singh, B. K., Quince, C., Macdonald, C. A., Khachane, A., Thomas, N., Abu Al-Soud, W., Sørensen, Søren Johannes, He, Z., White, D., Sinclair, A., Crooks, B., Zhou, J. & Campbell, C. D., 2014, In: Environmental Microbiology. 16, 8, p. 2408-2420 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Low Turnover of Soil Bacterial rRNA at Low Temperatures
Schostag, M. D., Albers, C. N., Jacobsen, C. S. & Priemé, Anders, 2020, In: Frontiers in Microbiology. 11, 5 p., 962.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Low-abundant species facilitates specific spatial organization that promotes multispecies biofilm formation
Liu, W., Russel, J., Røder, Henriette Lyng, Madsen, Jonas Stenløkke, Burmølle, Mette & Sørensen, Søren Johannes, 2017, In: Environmental Microbiology. 19, 7, p. 2893-2905 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Lower level relationships in the mushroom genus Cortinarius (Basidiomycota, Agaricales): A comparison of RPB1, RPB2, and ITS phylogenies
Frøslev, Tobias Guldberg, Matheny, P. B. & Hibbett, D. S., 2005, In: Molecular Phylogenetics and Evolution. 37, 2, p. 602-618 17 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Maize lines with different nitrogen use efficiency select bacterial communities with different β-glucosidase-encoding genes and glucosidase activity in the rhizosphere
Pathan, S. I., Ceccherini, M. T., Hansen, M. A., Giagnoni, L., Ascher, J., Arenella, M., Sørensen, Søren Johannes, Pietramellara, G., Nannipieri, P. & Renella, G., 2015, In: Biology and Fertility of Soils. 51, 8, p. 995-1004 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Manure and Doxycycline Affect the Bacterial Community and Its Resistome in Lettuce Rhizosphere and Bulk Soil
Blau, K., Jacquiod, S., Sørensen, Søren Johannes, Su, J., Zhu, Y., Smalla, K. & Jechalke, S., 2019, In: Frontiers in Microbiology. 10, p. 1-15 725.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Mapping of HNF4alpha target genes in intestinal epithelial cells
Boyd, M., Bressendorff, Simon, Moller, J., Olsen, Jørgen & Troelsen, J., 2009, In: BMC Gastroenterology. 9, 1, p. 68Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Mating system system estimates and effective population numbers for an isolated noble fir (Abies procera) clonal seed orchard in Denmark
Siegismund, Hans Redlef, Kjær, Erik Dahl & Nielsen, Ulrik Braüner, 1996, In: Canadian Journal of Forest Research. 26, p. 1135-1141Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Maturation of the gut microbiome and risk of asthma in childhood
Stokholm, Jakob, Blaser, M. J., Thorsen, Jonathan Jan Ilve, Rasmussen, Morten Arendt, Waage, J. E., Vinding, R. K., Schoos, A. M., Kunøe, A., Fink, N. R., Chawes, Bo Lund Krogsgaard, Bønnelykke, Klaus, Brejnrod, A. D., Mortensen, M. S., Abu Al-Soud, W., Sørensen, Søren Johannes & Bisgaard, H., 2018, In: Nature Communications. 9, 10 p., 141.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Maximum likelihood estimation of ancestral codon usage bias parameters in Drosophila
Nielsen, Rasmus, Bauer DuMont, V. L., Hubisz, M. J. & Aquadro, C. F., 2007, In: Molecular Biology and Evolution. 24, 1, p. 228-35 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Measurement of the length of fungal hyphae by the membrane filter technique as a method for comparing fungal occurrence in cultivated field soils
Elmholt, S. & Kjøller, Annelise Helene, 1987, In: Soil Biology and Biochemistry. 19, 6, p. 679-682 4 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Mercuric reductase genes (merA) and mercury resistance plasmids in High Arctic snow, freshwater and sea-ice brine
Møller, A. K., Barkay, T., Hansen, M. A., Norman, A., Hansen, Lars Hestbjerg, Sørensen, Søren Johannes, Boyd, E. S. & Kroer, Niels, 2014, In: FEMS Microbiology Ecology. 87, 1, p. 52-63 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Metabolic Profiling of Interspecies Interactions During Sessile Bacterial Cultivation Reveals Growth and Sporulation Induction in Paenibacillus amylolyticus in Response to Xanthomonas retroflexus
Herschend, J., Ernst, M., Koren, K., Melnik, A. V., da Silva, R. R., Røder, Henriette Lyng, Damholt, Z. B. V., Hägglund, Per Mårten, Svensson, B., Sørensen, Søren Johannes, Kühl, Michael, Dorrestein, P. C. & Burmølle, Mette, 2022, In: Frontiers in Cellular and Infection Microbiology. 12, 17 p., 805473.Research output: Contribution to journal › Journal article › Research › peer-review
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Metabolic variability in bioprocessing: implications of microbial phenotypic heterogeneity
Delvigne, F., Zune, Q., Lara, A. R., Abu Al-Soud, W. & Sørensen, Søren Johannes, 2014, In: Trends in Biotechnology. 32, 12, p. 608-616 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Metabolism of Milk Oligosaccharides in Preterm Pigs Sensitive to Necrotizing Enterocolitis
Rudloff, S., Kuntz, S., Rasmussen, S. O., Roggenbuck, M., Sprenger, N., Kunz, C., Sangild, Per Torp & Bering, S. B., 2019, In: Frontiers in Nutrition. 6, 11 p., 23.Research output: Contribution to journal › Journal article › Research › peer-review
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Metagenomes provide valuable comparative information on soil microeukaryotes
Jacquiod, S. J. A., Stenbæk, J., Santos, S. S., Winding, A., Sørensen, Søren Johannes & Priemé, Anders, 2016, In: Research in Microbiology. 167, 5, p. 436-450 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Metagenomic analyses reveal no differences in genes involved in cellulose degradation under different tillage treatments
De Vries, M., Schöler, A., Ertl, J., Xu, Z. & Schloter, M., 2015, In: FEMS Microbiology Ecology. 91, 7, p. 1-10 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Metagenomic analysis of a keratin-degrading bacterial consortium provides insight into the keratinolytic mechanisms
Kang, D., Huang, Y., Nesme, Joseph, Herschend, J., Jacquiod, S., Kot, Witold, Hansen, Lars Hestbjerg, Lange, L. & Sørensen, Søren Johannes, 2021, In: Science of the Total Environment. 761, 9 p., 143281.Research output: Contribution to journal › Journal article › Research › peer-review
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Metagenomic analysis of dairy bacteriophages: extraction method and pilot study on whey samples derived from using undefined and defined mesophilic starter cultures
Muhammed, Musemma Kedir, Kot, Witold, Neve, H., Mahony, J., Castro Mejia, J. L., Krych, Lukasz, Hansen, L. H., Nielsen, Dennis Sandris, Sørensen, Søren Johannes, Heller, K. J., van Sinderen, D. & Vogensen, Finn Kvist, 2017, In: Applied and Environmental Microbiology. 83, 19, 15 p., e00888-17.Research output: Contribution to journal › Journal article › Research › peer-review
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Metagenomic comparison of antibiotic resistance genes associated with liquid and dewatered biosolids
McCall, C. A., Bent, E., Jørgensen, T. S., Dunfield, K. E. & Habash, M. B., 2016, In: Journal of Environmental Quality. 45, 2, p. 463-470 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Metagenomic evidence for co-occurrence of antibiotic, biocide and metal resistance genes in pigs
Li, Xuan Ji, Rensing, C., Vestergaard, G., Arumugam, Mani, Nesme, Joseph, Gupta, S., Brejnrod, A. D. & Sørensen, Søren Johannes, 2022, In: Environment International. 158, 10 p., 106899.Research output: Contribution to journal › Journal article › Research › peer-review
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Metal stressors consistently modulate bacterial conjugal plasmid uptake potential in a phylogenetically conserved manner
Klümper, U., Dechesne, A., Riber, Leise, Brandt, Kristian Koefoed, Gülay, A., Sørensen, Søren Johannes & Smets, B. F., 2017, In: The ISME Journal. 11, 1, p. 152-165 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Metal-induced bacterial interactions promote diversity in river-sediment microbiomes
Cyriaque, V., Géron, A., Billon, G., Nesme, Joseph, Werner, J., Gillan, D. C., Sørensen, Søren Johannes & Wattiez, R., 2020, In: F E M S Microbiology Ecology. 96, 6, 12 p., fiaa076.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Metamobilomics - Expanding the environmental mobilome with high throughput sequencing
Norman, A., Li, L., Hansen, Lars Hestbjerg & Sørensen, Søren Johannes, Aug 2010.Research output: Contribution to conference › Poster › Research
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Metamobilomics — expanding our knowledge on the pool of plasmid encoded traits in natural environments using high-throughput sequencing
Li, L., Norman, A., Hansen, Lars Hestbjerg & Sørensen, Søren Johannes, 2012, In: Clinical Microbiology and Infection. 18, Suppl. 4, p. 8-11 4 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Metamorphosis in balanomorphan, pedunculated, and parasitic barnacles: a video-based analysis
Høeg, Jens Thorvald, Maruzzo, D., Okano, K., Glenner, Henrik & Chan, B. K. K., 2012, In: Integrative and Comparative Biology. 52, 3, p. 337-347 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Methane uptake by a selection of soils in Ghana with different land use
Priemé, Anders & Christensen, Søren, 1999, In: Journal of Geophysical Research - Oceans. 104, 19, p. 23617-23622 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Methanotrophs, methanogens and microbial community structure in livestock slurry surface crusts
Duan, Y. F., Abu Al-Soud, W., Brejnrod, A. D., Sørensen, Søren Johannes, Elsgaard, L., Petersen, S. O. & Boon, N., 2014, In: Journal of Applied Microbiology. 117, 4, p. 1066-1078 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Micro-scale intermixing: a requisite for stable and synergistic co-establishment in a four-species biofilm
Liu, W., Russel, J., Burmølle, Mette, Sørensen, Søren Johannes & Madsen, Jonas Stenløkke, 2018, In: I S M E Journal. 12, p. 1940-1951 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Microbe-plant Interactions: Impact of bacterial interactions and multispecies biofilms on plant growth and drought tolerance
Yang, Nan, 2023, Department of Biology, Faculty of Science, University of Copenhagen. 115 p.Research output: Book/Report › Ph.D. thesis › Research
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Microbial Interactions in Electroactive Biofilms for Environmental Engineering Applications: A Role for Nonexoelectrogens
Fessler, M., Madsen, Jonas Stenløkke & Zhang, Y., 2022, In: Environmental Science & Technology. 56, 22, p. 15273-15279 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Microbial changes during oil decomposition in soil
Pinholt, Y., Struwe, Sten & Kjøller, Annelise Helene, Jul 1979, In: Ecography. 2, 3, p. 195-200 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Microbial community analysis of soils under different soybean cropping regimes in the Argentinean south-eastern Humid Pampas
Fernandez-Gnecco, G., Smalla, K., Maccario, Lorrie, Sørensen, Søren Johannes, Barbieri, P., Consolo, V. F., Covacevich, F. & Babin, D., 2021, In: FEMS Microbiology Ecology. 97, 3, 14 p., fiab007.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Microbial diversity and PAH catabolic genes tracking spatial heterogeneity of PAH concentrations
Bengtsson, G., Törneman, N., Lipthay, J. R. D. & Sørensen, Søren Johannes, 2013, In: Microbial Ecology. 65, 1, p. 91-100 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Microbial diversity and dynamics throughout manufacturing and ripening of surface ripened semi-hard Danish Danbo cheeses investigated by culture-independent techniques
Ryssel, M., Johansen, P., Abu Al-Soud, W., Sørensen, Søren Johannes, Arneborg, Nils & Jespersen, Lene, 2015, In: International Journal of Food Microbiology. 215, p. 124-30 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Microbial diversity and putative opportunistic pathogens in dishwasher biofilm communities
Raghupathi, P. K., Zupančič, J., Brejnrod, A. D., Jacquiod, S. J. A., Houf, K., Burmølle, Mette, Gunde-Cimerman, N. & Sørensen, Søren Johannes, 2018, In: Applied and Environmental Microbiology. 84, 5, 17 p., e02755-17.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Microbial diversity in a permanently cold and alkaline environment in Greenland
Glaring, M. A., Vester, J. K., Lylloff, J. E., Abu Al-Soud, W., Sørensen, Søren Johannes & Stougaard, P., 2015, In: PLoS ONE. 10, 4, 22 p., e0124863.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Microbial diversity of biofilm communities in microniches associated with the didemnid ascidian Lissoclinum patella
Behrendt, L., Larkum, A. W. D., Trampe, Erik, Norman, A., Sørensen, Søren Johannes & Kühl, Michael, 2012, In: I S M E Journal. 6, p. 1222-1237 16 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Microbial indicators for soil quality
Schloter, M., Nannipieri, P., Sørensen, Søren Johannes & van Elsas, J. D., Jan 2018, In: Biology and Fertility of Soils. 54, 1, p. 1-10 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Microbiomes associated with infective stages of root-knot and lesion nematodes in soil
Elhadyl, A., Giné, A., Topalovic, O., Jacquiod, S. J. A., Sørensen, Søren Johannes, Javier Sorribas, F. & Heuer, H., 4 May 2017, In: PLoS ONE. 12, 5, 17 p., e0177145.Research output: Contribution to journal › Journal article › Research › peer-review
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Gut microbiota in human adults with type 2 diabetes differs from non-diabetic adults
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Sequence and comparative analysis of Leuconostoc dairy bacteriophages
Research output: Contribution to conference › Poster › Research
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Extreme emission of n2o from tropical wetland soil (pantanal, South America)
Research output: Contribution to journal › Journal article › Research › peer-review
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Optimizing cleaning strategies for biofouling in reverse osmosis membrane systems: A comparative study using a self-formed instrument
Research output: Contribution to journal › Journal article › Research › peer-review
Interphylum dissemination of NDM-5-positive plasmids in hospital wastewater from Fuzhou, China: a single-centre, culture-independent, plasmid transmission study
Research output: Contribution to journal › Journal article › Research › peer-review
Using Nanopore Sequencing Deciphering Antibiotic Resistance Dissemination In The Wastewater Systems
Research output: Book/Report › Ph.D. thesis › Research