Microbiology

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  1. Published

    Broad host range plasmids can invade an unexpectedly diverse fraction of a soil bacterial community

    Klümper, U., Riber, Leise, Dechesne, A., Sannazzaro, A. I., Hansen, Lars Hestbjerg, Sørensen, Søren Johannes & Smets, B. F., 2015, In: I S M E Journal. 9, p. 934-945 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  2. Published

    Broad phylogenomic sampling improves resolution of the animal tree of life

    Dunn, C. W., Hejnol, A., Matus, D. Q., Pang, K., Browne, W. E., Smith, S. A., Seaver, E., Rouse, G. W., Obst, M., Edgecombe, G. D., Sørensen, Martin Vinther, Haddock, S. H. D., Schmidt-Rhaesa, A., Okuso, A., Kristensen, Reinhardt Møbjerg, Wheeler, W. C., Martindale, M. Q. & Giribet, G., 2008, In: Nature. 452, p. 745-750

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Broad-spectrum anti-CRISPR proteins facilitate horizontal gene transfer

    Mahendra, C., Christie, K. A., Osuna, B. A., Pinilla Redondo, Rafael, Kleinstiver, B. P. & Bondy-Denomy, J., 2020, In: Nature Microbiology. 5, 4, p. 620-629 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Bromadiolone resistance does not respond to absence of anticoagulants in experimental populations of Norway rats.

    Heiberg, A. C., Leirs, H. & Siegismund, Hans Redlef, 2003, Rats, Mice and People: Rodent Biology and Management. Singleton, G. R., Hinds, L. A., Krebs, C. J. & Spratt, D. M. (eds.). Canberra, Vol. 96. p. 461-464

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research

  5. Published

    Bulk soil and maize rhizosphere resistance genes, mobile genetic elements and microbial communities are differently impacted by organic and inorganic fertilization

    Wolters, B., Jacquiod, S. J. A., Sørensen, Søren Johannes, Widyasari-Mehta, A., Bech, T. B., Kreuzig, R. & Smalla, K., 2018, In: F E M S Microbiology Ecology. 94, 4, 13 p., fiy027.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    CLIMAITE - a three factor climate change ecosystem manipulation experiment: Geophysical Research Abstracts, Vol. 10, EGU2008-A-07931, 2008. SRef-ID: 1607-7962/gra/EGU2008-A-07931. EGU General Assembly 13-18 April 2008 in Vienna, Switzerland

    N. Mikkelsen, T., Beier, C., Jonasson, S. E., Holmstrup, M., Schmidt, I. K., Ambus, P. L., Pilegaard, K., Michelsen, A., Albert, K., Andresen, L. C., Arndal, M. F., Bruun, N., Christensen, S., Danbæk, S., Gundersen, P., Jørgensen, P., J. Linden, L., Pedersen, J. K., Maraldo, K., Priemé, A. & 11 others, Riis-Nielsen, T., Ro-Poulsen, Helge, Andersen, K. S., Selsted, M., Sørensen, P., S. Larsen, K., S. Carter, M., Ibrom, A., Martinussen, Torben, Miglietta, F. & Sverdrup, H., 2008.

    Research output: Contribution to conference › Conference abstract for conference › Research

  7. Published

    CRISPR adaptive immune systems of Archaea

    Vestergaard, G. A., Garrett, Roger Antony & Shah, S. A., 2014, In: R N A Biology. 11, 2, p. 157-168 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    CRISPR families of the crenarchaeal genus Sulfolobus: bidirectional transcription and dynamic properties

    Lillestøl, R. K., Shah, S. A., Brügger, K., Redder, P., Phan, Safir Hien, Christiansen, Jan & Garrett, Roger Antony, 2009, In: Molecular Microbiology. 72, 1, p. 259-272

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    CRISPR-Cas systems are widespread accessory elements across bacterial and archaeal plasmids

    Pinilla Redondo, Rafael, Russel, J., Mayo-Muñoz, D., Shah, S. A., Garrett, Roger Antony, Nesme, Joseph, Madsen, Jonas Stenløkke, Fineran, P. C. & Sørensen, Søren Johannes, 2022, In: Nucleic Acids Research. 50, 8, p. 4315-4328

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    CRISPR-Cas12a targeting of ssDNA plays no detectable role in immunity

    Marino, N. D., Pinilla Redondo, Rafael & Bondy-Denomy, J., 2022, In: Nucleic acids symposium series. 50, 11, p. 6414-6422 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    CRISPRCasTyper: Automated Identification, Annotation, and Classification of CRISPR-Cas Loci

    Russel, J., Pinilla Redondo, Rafael, Mayo-Muñoz, D., Shah, S. A. & Sørensen, Søren Johannes, 2020, In: CRISPR Journal. 3, 6, p. 462-469 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Camillea (Xylariaceae, Ascomycota), including two new species, along a trans-Andean altitude gradient in Ecuador

    Hastrup, A. C. S. & Læssøe, Thomas, 2009, In: Mycological Progress. 8, 4, p. 305-316 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Can multi-species biofilms defeat antimicrobial surfaces on medical devices?

    Ramstedt, M. & Burmølle, Mette, 2022, In: Current Opinion in Biomedical Engineering. 22, 8 p., 100370.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Catch Crop Residues Stimulate N2O Emissions During Spring, Without Affecting the Genetic Potential for Nitrite and N2O Reduction

    Duan, Y., Hallin, S., Jones, C. M., Priemé, Anders, Labouriau, R. & Petersen, S. O., 2018, In: Frontiers in Microbiology. 9, p. 1-13 2629.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Cell mass and cell cycle dynamics of an asynchronous budding yeast population: Experimental observations, flow cytometry data analysis, and multi-scale modeling

    Lencastre Fernandes, R., Carlquist, M., Neves Lundin, A. L., Heins, A., Dutta, A., Sørensen, Søren Johannes, Jensen, R. A., Nopens, I., Eliasson Lantz, A. & Gernaey, K., 2013, In: Biotechnology and Bioengineering (Print). 110, 3, p. 812-826 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Centenarians have a diverse gut virome with the potential to modulate metabolism and promote healthy lifespan

    Johansen, Joachim, Atarashi, K., Arai, Y., Hirose, N., Sørensen, Søren Johannes, Vatanen, T., Knip, M., Honda, K., Xavier, R. J., Rasmussen, Simon & Plichta, D. R., 2023, In: Nature Microbiology. 8, p. 1064-1078 18 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Centre for Anti-resistance; Limiting the occurrence of antimicrobial resistance through targeted interventions directed at plasmid transfer and stability

    Riber, Leise, Burmølle, Mette, Hansen, Lars Hestbjerg & Sørensen, Søren Johannes, 2010.

    Research output: Contribution to conference › Poster › Research

  18. Published

    Changes in rumen bacterial and archaeal communities over the transition period in primiparous Holstein dairy cows

    Zhu, Z., Kristensen, L., Difford, G. F., Poulsen, M., Noel, S. J., Abu Al-Soud, W., Sørensen, Søren Johannes, Lassen, J., Løvendahl, P. & Højberg, O., 2018, In: Journal of Dairy Science. 101, 11, p. 9847-9862

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Changes in the flora of soil fungi following oil waste application

    Llanos, C. & Kjøller, Annelise Helene, 1976, In: Oikos. 27, 3, p. 377-382 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Changes induced by heavy metals in the plant-associated microbiome of Miscanthus x giganteus

    Zadel, U., Nesme, Joseph, Michalke, B., Vestergaard, G., Płaza, G. A., Schröder, P., Radl, V. & Schloter, M., 2020, In: Science of the Total Environment. 711, 10 p., 134433.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Changing Influences on Childhood Obesity: A Study of 2 Generations of the 1958 British Birth Cohort

    Pinot de Moira, Angela, Power, C. & Li, L., May 2010, In: American Journal of Epidemiology.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Characterisation, dissemination and persistence of gentamicin resistant Escherichia coli from a Danish university hospital to the waste water environment

    Jakobsen, L., Sandvang, D., Hansen, Lars Hestbjerg, Bagger-Skjøt, L., Westh, Henrik T., Jørgensen, C., Hansen, D. S., Pedersen, B. M., Monnet, D. L., Frimodt-Møller, N., Sørensen, Søren Johannes & Hammerum, A. M., 2008, In: Environment International. 34, 1, p. 108-15 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Characterization of Extracellular Biosurfactants Expressed by a Pseudomonas putida Strain Isolated from the Interior of Healthy Roots from Sida hermaphrodita Grown in a Heavy Metal Contaminated Soil

    Bernat, P., Nesme, Joseph, Paraszkiewicz, K., Schloter, M. & Płaza, G., 2019, In: Current Microbiology. 76, 11, p. 1320-1329 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Characterization of bacterial populations in Danish raw milk cheeses made with different starter cultures by denaturating gradient gel electrophoresis and pyrosequencing

    Masoud, W. M. H., Takamiya, M. K. W., Vogensen, Finn Kvist, Lillevang, S., Abu Al-Soud, W., Sørensen, Søren Johannes & Jakobsen, M., 2011, In: International Dairy Journal. 21, 3, p. 142-148 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Characterization of genetic determinants of extended-spectrum cephalosporinases (ESCs) in Escherichia coli isolates from Danish and imported poultry meat

    Bergenholtz, R. D., Jørgensen, M. S., Hansen, Lars Hestbjerg, Jensen, L. B. & Hasman, H., 2009, In: Journal of Antimicrobial Chemotherapy. 64, 1, p. 207-209 2 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

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